ORF_ID e_value Gene_name EC_number CAZy COGs Description
PADAMMFB_00001 1.3e-257 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PADAMMFB_00002 6.3e-202 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PADAMMFB_00003 1.1e-29 yyzM S Protein conserved in bacteria
PADAMMFB_00004 1.1e-203 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
PADAMMFB_00005 1.4e-104 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
PADAMMFB_00006 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PADAMMFB_00007 1.7e-39 yabO J Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
PADAMMFB_00008 2.7e-61 divIC D Septum formation initiator
PADAMMFB_00010 1.3e-240 XK27_09285 3.5.2.6 V Beta-lactamase enzyme family
PADAMMFB_00011 5e-240 tilS 2.4.2.8, 6.3.4.19 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
PADAMMFB_00012 3.4e-97 hpt 2.4.2.8, 6.3.4.19 F Belongs to the purine pyrimidine phosphoribosyltransferase family
PADAMMFB_00013 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PADAMMFB_00014 7.7e-109 L Transposase
PADAMMFB_00015 4e-50 L Transposase
PADAMMFB_00016 5.2e-36 L transposase activity
PADAMMFB_00026 5.3e-11
PADAMMFB_00032 5.5e-139 mreC M Involved in formation and maintenance of cell shape
PADAMMFB_00033 6.3e-88 mreD M Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
PADAMMFB_00034 1.7e-90 usp 3.5.1.28 CBM50 S CHAP domain
PADAMMFB_00035 1.2e-174 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PADAMMFB_00036 2.9e-218 araT 2.6.1.1 E Aminotransferase
PADAMMFB_00037 7e-144 recO L Involved in DNA repair and RecF pathway recombination
PADAMMFB_00038 1.6e-177 plsX 2.3.1.15 I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
PADAMMFB_00039 9.3e-34 acpP1 IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
PADAMMFB_00040 9.9e-129 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
PADAMMFB_00041 0.0 purL 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PADAMMFB_00042 1.3e-276 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PADAMMFB_00043 4.8e-185 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
PADAMMFB_00044 1.4e-101 purN 2.1.2.2 F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PADAMMFB_00045 6.6e-295 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
PADAMMFB_00046 6.1e-79 L transposase activity
PADAMMFB_00047 1e-49 L transposition
PADAMMFB_00048 2e-32 L Integrase core domain protein
PADAMMFB_00049 2.3e-161 S CHAP domain
PADAMMFB_00050 3.4e-241 purD 6.3.4.13 F Belongs to the GARS family
PADAMMFB_00051 4.9e-76 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PADAMMFB_00052 2.2e-204 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PADAMMFB_00053 7e-98 1.1.1.169 H Ketopantoate reductase
PADAMMFB_00054 8.7e-248 purB 4.3.2.2 F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PADAMMFB_00055 0.0 argS 6.1.1.19 J Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PADAMMFB_00056 8.2e-70 argR K Regulates arginine biosynthesis genes
PADAMMFB_00057 1.8e-57 ymcA 3.6.3.21 S Belongs to the UPF0342 family
PADAMMFB_00058 0.0 mutS L that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PADAMMFB_00059 5.7e-36 S Protein of unknown function (DUF3021)
PADAMMFB_00060 6.2e-51 KT phosphorelay signal transduction system
PADAMMFB_00062 0.0 mutL L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PADAMMFB_00064 7.8e-103 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
PADAMMFB_00065 3.2e-106 tag 3.2.2.20 L 3-methyladenine DNA glycosylase
PADAMMFB_00066 6.5e-232 cinA 3.5.1.42 S Belongs to the CinA family
PADAMMFB_00067 4.7e-205 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PADAMMFB_00068 2.3e-66 spxA_2 1.20.4.1 P Belongs to the ArsC family
PADAMMFB_00073 2.6e-10
PADAMMFB_00076 1.9e-07
PADAMMFB_00081 0.0 polC 2.7.7.7 L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PADAMMFB_00082 3.3e-236 pepS E COG2309 Leucyl aminopeptidase (aminopeptidase T)
PADAMMFB_00083 5.5e-36 XK27_02060 S Transglycosylase associated protein
PADAMMFB_00084 1.7e-54 badR K DNA-binding transcription factor activity
PADAMMFB_00085 1e-96 S reductase
PADAMMFB_00086 2.3e-31 L Integrase core domain protein
PADAMMFB_00087 6.2e-36 L transposition
PADAMMFB_00088 1.9e-22 yocD 3.4.17.13 V carboxypeptidase activity
PADAMMFB_00089 3.8e-87 yocD 3.4.17.13 V proteins, homologs of microcin C7 resistance protein MccF
PADAMMFB_00092 1.6e-137 rpsB J Belongs to the universal ribosomal protein uS2 family
PADAMMFB_00093 1.7e-182 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PADAMMFB_00094 5.5e-83 S Putative small multi-drug export protein
PADAMMFB_00095 4e-75 ctsR K Belongs to the CtsR family
PADAMMFB_00096 0.0 clpC O Belongs to the ClpA ClpB family
PADAMMFB_00097 7e-127 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PADAMMFB_00098 4.4e-53 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PADAMMFB_00099 4.2e-231 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PADAMMFB_00100 0.0 pnp 2.7.7.8 J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
PADAMMFB_00101 6.9e-144 S SseB protein N-terminal domain
PADAMMFB_00102 1.1e-112 cysE 2.3.1.30 E serine acetyltransferase
PADAMMFB_00103 3.9e-259 cysS 6.1.1.16, 6.3.1.13 J Belongs to the class-I aminoacyl-tRNA synthetase family
PADAMMFB_00104 4.2e-68 mrnC J Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PADAMMFB_00107 5.7e-135 trmH 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PADAMMFB_00108 1.3e-90 yacP S RNA-binding protein containing a PIN domain
PADAMMFB_00109 3.4e-155 degV S DegV family
PADAMMFB_00110 1.8e-31 K helix-turn-helix
PADAMMFB_00111 1.6e-182 panE 1.1.1.169 H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PADAMMFB_00112 2e-79 rplM J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PADAMMFB_00113 9.5e-65 rpsI J Belongs to the universal ribosomal protein uS9 family
PADAMMFB_00114 5.6e-211 spaC2 V Lanthionine synthetase C family protein
PADAMMFB_00115 1.6e-128 EGP Major facilitator Superfamily
PADAMMFB_00117 9.6e-123
PADAMMFB_00118 1.8e-76 isp2 S pathogenesis
PADAMMFB_00119 2.2e-125 tnp L Transposase IS66 family
PADAMMFB_00120 3.3e-225 capA M Bacterial capsule synthesis protein
PADAMMFB_00121 3.6e-39 gcvR T UPF0237 protein
PADAMMFB_00122 8.7e-243 XK27_08635 S UPF0210 protein
PADAMMFB_00123 4.8e-38 ais G alpha-ribazole phosphatase activity
PADAMMFB_00124 1.6e-143 vanY 3.4.17.14 M D-alanyl-D-alanine carboxypeptidase
PADAMMFB_00125 1.3e-102 acmA 3.2.1.17 NU amidase activity
PADAMMFB_00126 5.3e-198 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
PADAMMFB_00127 1.5e-71 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PADAMMFB_00128 9.8e-298 dnaK O Heat shock 70 kDa protein
PADAMMFB_00129 4.2e-190 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
PADAMMFB_00130 2.5e-138 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
PADAMMFB_00131 6.2e-137 thiD 2.7.1.35, 2.7.1.49, 2.7.4.7 H phosphomethylpyrimidine kinase
PADAMMFB_00132 1.7e-60 hmpT S membrane
PADAMMFB_00133 9.9e-19 S Domain of unknown function (DUF4649)
PADAMMFB_00134 8.3e-31 amd 3.5.1.47 E Peptidase dimerisation domain
PADAMMFB_00135 1.2e-232 cfa 2.1.1.317, 2.1.1.79 M cyclopropane-fatty-acyl-phospholipid synthase
PADAMMFB_00136 1.6e-77 sigH K DNA-templated transcription, initiation
PADAMMFB_00137 3.5e-149 ykuT M mechanosensitive ion channel
PADAMMFB_00138 2.4e-218 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
PADAMMFB_00139 4.8e-73 rpoE K Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
PADAMMFB_00140 7.6e-310 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
PADAMMFB_00141 1.1e-83 XK27_03960 S Protein of unknown function (DUF3013)
PADAMMFB_00142 3.7e-81 mutT3 3.6.1.13, 3.6.1.55 L NUDIX domain
PADAMMFB_00143 1.3e-176 prmA J Ribosomal protein L11 methyltransferase
PADAMMFB_00144 4.4e-135 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
PADAMMFB_00145 2.1e-29 cpdB 3.1.3.6, 3.1.4.16 F nucleotide catabolic process
PADAMMFB_00146 1e-85 cpdB 3.1.3.6, 3.1.4.16 F Belongs to the 5'-nucleotidase family
PADAMMFB_00147 7.6e-46 cpdB 3.1.3.6, 3.1.4.16 F Belongs to the 5'-nucleotidase family
PADAMMFB_00148 1.7e-186 cpdB 3.1.3.6, 3.1.4.16 F Belongs to the 5'-nucleotidase family
PADAMMFB_00149 8.2e-96 nrdI F Belongs to the NrdI family
PADAMMFB_00150 0.0 relA 2.7.6.5 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PADAMMFB_00151 2.3e-75 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
PADAMMFB_00152 1.4e-09 dex 3.2.1.11 GH66 G Glycosyl hydrolase family 66
PADAMMFB_00153 2e-27 dex 3.2.1.11 GH66 G Glycosyl hydrolase family 66
PADAMMFB_00154 2.1e-58 dex 3.2.1.11 GH66 G Glycosyl hydrolase family 66
PADAMMFB_00155 3.9e-46 dex 3.2.1.11 GH66 G Glycosyl hydrolase family 66
PADAMMFB_00156 1.7e-237 ilvA 4.3.1.19 E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PADAMMFB_00157 3.3e-112 def 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
PADAMMFB_00158 5.3e-113 fnr5 K Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
PADAMMFB_00159 4.2e-201 yhjX P Major Facilitator
PADAMMFB_00160 9.2e-43 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PADAMMFB_00161 5e-94 V VanZ like family
PADAMMFB_00163 1e-123 glnQ E abc transporter atp-binding protein
PADAMMFB_00164 4.9e-274 glnP P ABC transporter
PADAMMFB_00165 9.1e-153 uppP 3.6.1.27 V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
PADAMMFB_00166 2.3e-136 mecA NOT Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
PADAMMFB_00167 3.8e-186 tagO 2.7.8.33, 2.7.8.35 M transferase
PADAMMFB_00168 9.5e-144 sufC O ABC-type transport system involved in Fe-S cluster assembly, ATPase component
PADAMMFB_00169 6.3e-235 sufD O assembly protein SufD
PADAMMFB_00170 7.7e-238 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PADAMMFB_00171 2.5e-74 nifU C SUF system FeS assembly protein, NifU family
PADAMMFB_00172 2.2e-273 sufB O assembly protein SufB
PADAMMFB_00173 7e-10 oppA E ABC transporter substrate-binding protein
PADAMMFB_00174 2e-138 oppA E ABC transporter substrate-binding protein
PADAMMFB_00175 4.2e-27 oppB P ABC-type dipeptide oligopeptide nickel transport systems, permease components
PADAMMFB_00176 6.6e-11 oppC EP ABC-type dipeptide oligopeptide nickel transport systems, permease components
PADAMMFB_00177 1.7e-33 oppC EP ABC-type dipeptide oligopeptide nickel transport systems, permease components
PADAMMFB_00178 2.5e-09 oppC EP ABC-type dipeptide oligopeptide nickel transport systems, permease components
PADAMMFB_00179 6.4e-39 oppC EP ABC-type dipeptide oligopeptide nickel transport systems, permease components
PADAMMFB_00180 8e-28 oppD P Belongs to the ABC transporter superfamily
PADAMMFB_00181 2.5e-32 oppD P Belongs to the ABC transporter superfamily
PADAMMFB_00182 1.2e-62 oppD P Belongs to the ABC transporter superfamily
PADAMMFB_00183 1.2e-42 oppD P Belongs to the ABC transporter superfamily
PADAMMFB_00184 7.5e-62 oppF P Belongs to the ABC transporter superfamily
PADAMMFB_00185 3.4e-62 oppF P Belongs to the ABC transporter superfamily
PADAMMFB_00186 8.3e-23
PADAMMFB_00187 1.1e-161 hslO O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PADAMMFB_00188 7.4e-183 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PADAMMFB_00189 6e-128 K sequence-specific DNA binding
PADAMMFB_00190 0.0 KLT serine threonine protein kinase
PADAMMFB_00191 5.9e-103 KLT serine threonine protein kinase
PADAMMFB_00192 7.2e-223 EGP Major facilitator Superfamily
PADAMMFB_00193 3.1e-72 adcR K transcriptional
PADAMMFB_00194 2.2e-136 adcC P ABC transporter, ATP-binding protein
PADAMMFB_00195 4.6e-130 adcB P ABC transporter (Permease
PADAMMFB_00196 6.2e-163 mleP2 S Transporter, auxin efflux carrier (AEC) family protein
PADAMMFB_00197 5.6e-65 ptsG 2.7.1.199, 2.7.1.208 G pts system
PADAMMFB_00198 2.1e-150 ptsG 2.7.1.199, 2.7.1.208, 2.7.1.211 G pts system
PADAMMFB_00199 1.4e-105 ptsG 2.7.1.199, 2.7.1.208, 2.7.1.211 G phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
PADAMMFB_00200 6.8e-158 rgfB 3.1.3.90 L Endonuclease/Exonuclease/phosphatase family
PADAMMFB_00201 2.8e-257 pgi 5.3.1.9 G Belongs to the GPI family
PADAMMFB_00202 1.9e-127 yeeN K transcriptional regulatory protein
PADAMMFB_00203 9.8e-50 yajC U protein transport
PADAMMFB_00204 1.1e-141 uppS 2.5.1.31 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PADAMMFB_00205 6.5e-145 cdsA 2.7.7.41 S Belongs to the CDS family
PADAMMFB_00206 1.4e-231 rseP 3.4.21.107, 3.4.21.116 M zinc metalloprotease
PADAMMFB_00207 0.0 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
PADAMMFB_00208 0.0 WQ51_06230 S ABC transporter substrate binding protein
PADAMMFB_00209 5.2e-142 cmpC S abc transporter atp-binding protein
PADAMMFB_00210 1.3e-42 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PADAMMFB_00211 4.1e-287 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
PADAMMFB_00212 3.5e-32 L Integrase core domain protein
PADAMMFB_00215 3e-42
PADAMMFB_00216 3.4e-55 S TM2 domain
PADAMMFB_00217 1.2e-165 rluA 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PADAMMFB_00218 0.0 pbp2A 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PADAMMFB_00219 3.3e-21 rpmG J Belongs to the bacterial ribosomal protein bL33 family
PADAMMFB_00220 5.7e-25 secE U Belongs to the SecE SEC61-gamma family
PADAMMFB_00221 8.4e-96 nusG K Participates in transcription elongation, termination and antitermination
PADAMMFB_00222 7.8e-85 3.1.3.27, 3.1.3.4, 3.1.3.81, 3.6.1.27 I phosphatidate phosphatase activity
PADAMMFB_00223 6e-55 cof Q phosphatase activity
PADAMMFB_00224 1.1e-34 cof Q phosphatase activity
PADAMMFB_00225 3.8e-134 glcR K transcriptional regulator (DeoR family)
PADAMMFB_00226 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
PADAMMFB_00227 7.6e-41 K transcriptional
PADAMMFB_00228 3.4e-217 S COG1073 Hydrolases of the alpha beta superfamily
PADAMMFB_00229 9.6e-280 pncB 6.3.4.21 H Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PADAMMFB_00230 4.8e-151 nadE 6.3.1.5 H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
PADAMMFB_00231 3.2e-77 yhaI L Membrane
PADAMMFB_00232 1.7e-259 pepC 3.4.22.40 E aminopeptidase
PADAMMFB_00233 0.0 ponA 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PADAMMFB_00234 2.5e-109 recU L Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
PADAMMFB_00235 5.5e-83 ypsA S Belongs to the UPF0398 family
PADAMMFB_00236 2.5e-50 gpsB D Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
PADAMMFB_00237 4.3e-222 rlmL 2.1.1.173, 2.1.1.264 L Belongs to the methyltransferase superfamily
PADAMMFB_00238 2.5e-296 mapZ D Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning
PADAMMFB_00239 0.0 snf 2.7.11.1 L Superfamily II DNA RNA helicases, SNF2 family'
PADAMMFB_00240 2.5e-23
PADAMMFB_00241 2.6e-255 mpl 6.3.2.4, 6.3.2.45, 6.3.2.8 M Belongs to the MurCDEF family
PADAMMFB_00242 7.3e-80 XK27_09675 K -acetyltransferase
PADAMMFB_00243 0.0 mltG ADL Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PADAMMFB_00244 1.6e-77 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PADAMMFB_00245 5.2e-59 L Integrase core domain protein
PADAMMFB_00246 2.9e-165 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PADAMMFB_00247 7e-46 acyP 3.6.1.7 C Belongs to the acylphosphatase family
PADAMMFB_00248 6.4e-131 spoU 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PADAMMFB_00249 6.1e-93 XK27_09705 6.1.1.14 S HD superfamily hydrolase
PADAMMFB_00250 1.5e-97 ybhL S Belongs to the BI1 family
PADAMMFB_00253 9.6e-244 lysA 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
PADAMMFB_00254 3.1e-90 K transcriptional regulator
PADAMMFB_00255 7.6e-36 yneF S UPF0154 protein
PADAMMFB_00256 1.9e-147 murI 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
PADAMMFB_00257 3e-184 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PADAMMFB_00258 3.5e-99 XK27_09740 S Phosphoesterase
PADAMMFB_00259 2.1e-85 ykuL S CBS domain
PADAMMFB_00260 1.3e-137 xerD L tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site
PADAMMFB_00261 4.5e-121 scpA D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PADAMMFB_00262 8.8e-99 scpB D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PADAMMFB_00263 6.1e-140 rluB 5.4.99.19, 5.4.99.21, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PADAMMFB_00264 3.4e-39 yidD S Could be involved in insertion of integral membrane proteins into the membrane
PADAMMFB_00265 1.2e-258 trkH P Cation transport protein
PADAMMFB_00266 1.5e-247 trkA P Potassium transporter peripheral membrane component
PADAMMFB_00267 7.9e-96 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
PADAMMFB_00268 3.2e-90 ribU U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
PADAMMFB_00269 3.1e-113 bcrC 3.6.1.27 I Membrane-associated phospholipid phosphatase
PADAMMFB_00270 1.5e-161 K sequence-specific DNA binding
PADAMMFB_00271 3.6e-32 V protein secretion by the type I secretion system
PADAMMFB_00272 4.1e-108 V ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PADAMMFB_00273 1.1e-34 V protein secretion by the type I secretion system
PADAMMFB_00274 1.8e-27 comA V protein secretion by the type I secretion system
PADAMMFB_00275 3.4e-68 comA V ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PADAMMFB_00276 1.9e-44 yhaI L Membrane
PADAMMFB_00277 2.1e-131 S Domain of unknown function (DUF4173)
PADAMMFB_00278 6.8e-95 ureI S AmiS/UreI family transporter
PADAMMFB_00279 7.6e-46 ureA 3.5.1.5 E Belongs to the urease gamma subunit family
PADAMMFB_00280 7.8e-54 ureB 3.5.1.5 E Belongs to the urease beta subunit family
PADAMMFB_00281 0.0 ureC 3.5.1.5 E Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family
PADAMMFB_00282 6.6e-78 ureE O enzyme active site formation
PADAMMFB_00283 5.3e-130 ureF O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PADAMMFB_00284 9.5e-112 ureG KO Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PADAMMFB_00285 8.3e-159 ureD O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PADAMMFB_00286 7.9e-177 cbiM P PDGLE domain
PADAMMFB_00287 1.1e-136 P cobalt transport protein
PADAMMFB_00288 1.6e-131 cbiO P ABC transporter
PADAMMFB_00289 3e-36 ET amino acid transport
PADAMMFB_00290 6.4e-50 ET amino acid transport
PADAMMFB_00291 4.1e-242 Q Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PADAMMFB_00292 0.0 3.3.1.1, 3.6.1.55, 3.6.1.67 F NUDIX domain
PADAMMFB_00293 3.8e-205 EGP Transmembrane secretion effector
PADAMMFB_00294 1.8e-153 ET amino acid transport
PADAMMFB_00295 7.1e-164 metQ M Belongs to the NlpA lipoprotein family
PADAMMFB_00296 4.9e-87 dapE 3.5.1.18 E COG0624, acetylornithine deacetylase succinyl-diaminopimelate desuccinylase and related deacylases
PADAMMFB_00297 1.2e-61 dapE 3.5.1.18 E succinyl-diaminopimelate desuccinylase activity
PADAMMFB_00298 1.4e-62 dapE 3.5.1.18 E succinyl-diaminopimelate desuccinylase activity
PADAMMFB_00299 1.2e-189 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PADAMMFB_00300 3e-98 metI P ABC transporter (Permease
PADAMMFB_00301 4.6e-211 sstT E Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
PADAMMFB_00302 5.5e-158 salL 2.5.1.63, 2.5.1.94 S S-adenosyl-l-methionine hydroxide adenosyltransferase
PADAMMFB_00303 8e-94 S UPF0397 protein
PADAMMFB_00304 0.0 ykoD P abc transporter atp-binding protein
PADAMMFB_00305 1.2e-146 cbiQ P cobalt transport
PADAMMFB_00306 0.0 tkt 2.2.1.1 G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PADAMMFB_00307 1.4e-11 ulaG S L-ascorbate 6-phosphate lactonase
PADAMMFB_00308 1.4e-121 ktrA P COG0569 K transport systems, NAD-binding component
PADAMMFB_00309 6.8e-243 P COG0168 Trk-type K transport systems, membrane components
PADAMMFB_00310 3.1e-130 rsmG 2.1.1.170 J Ribosomal RNA small subunit methyltransferase G
PADAMMFB_00311 2.1e-91 yceD K metal-binding, possibly nucleic acid-binding protein
PADAMMFB_00312 8.7e-122 T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PADAMMFB_00313 1.7e-274 T PhoQ Sensor
PADAMMFB_00314 2.8e-82 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PADAMMFB_00315 3.2e-217 dnaB L Replication initiation and membrane attachment
PADAMMFB_00316 4e-167 dnaI L Primosomal protein DnaI
PADAMMFB_00317 2e-247 der 1.1.1.399, 1.1.1.95 S GTPase that plays an essential role in the late steps of ribosome biogenesis
PADAMMFB_00319 3.2e-35
PADAMMFB_00320 2.9e-86 yrdC 3.5.1.19 Q isochorismatase
PADAMMFB_00321 1.3e-79 L PFAM Integrase catalytic region
PADAMMFB_00322 1e-120 M domain protein
PADAMMFB_00323 3.4e-184 M domain protein
PADAMMFB_00324 4.9e-44 L Integrase core domain
PADAMMFB_00325 2.6e-94 L Integrase core domain
PADAMMFB_00326 2.1e-123 L Transposase
PADAMMFB_00327 3.7e-44 L Transposase
PADAMMFB_00328 8.6e-232 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PADAMMFB_00329 4.2e-62 manO S protein conserved in bacteria
PADAMMFB_00330 6.2e-168 manN G PTS system mannose fructose sorbose family IID component
PADAMMFB_00331 1.7e-116 manM G pts system
PADAMMFB_00332 2.4e-173 manL 2.7.1.191 G pts system
PADAMMFB_00333 1.5e-140 XK27_00940 1.2.1.70, 3.5.1.9 S Metal-dependent hydrolase
PADAMMFB_00334 1e-153 yitU 3.1.3.104 S hydrolases of the HAD superfamily
PADAMMFB_00335 2.1e-247 pbuO S permease
PADAMMFB_00336 1.4e-77 ydiB 2.7.1.221, 5.1.1.1 M ATPase or kinase
PADAMMFB_00337 3.2e-92 XK27_05885 2.3.1.82 M Acetyltransferase GNAT Family
PADAMMFB_00338 1.8e-218 brpA K Transcriptional
PADAMMFB_00339 3.9e-81 rimP S Required for maturation of 30S ribosomal subunits
PADAMMFB_00340 3.1e-212 nusA K Participates in both transcription termination and antitermination
PADAMMFB_00341 1e-47 ylxR K Nucleic-acid-binding protein implicated in transcription termination
PADAMMFB_00342 2e-46 ylxQ J ribosomal protein
PADAMMFB_00343 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PADAMMFB_00344 1.7e-57 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PADAMMFB_00345 2e-22 yvdD 3.2.2.10 S Belongs to the LOG family
PADAMMFB_00346 4.4e-25 yvdD 3.2.2.10 S cytokinin biosynthetic process
PADAMMFB_00348 4.1e-234 femA 2.3.2.10, 2.3.2.16, 2.3.2.17, 2.3.2.18 V protein involved in methicillin resistance
PADAMMFB_00349 1.4e-275 murE 6.3.2.13, 6.3.2.7 M to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PADAMMFB_00350 4.5e-283 ytgP S Membrane protein involved in the export of O-antigen and teichoic acid
PADAMMFB_00351 1.6e-95 pacL 3.6.3.8, 3.6.3.9 P cation transport ATPase
PADAMMFB_00352 4.7e-202 metB 2.5.1.48, 4.4.1.8 E cystathionine
PADAMMFB_00353 3.6e-221 malY 4.4.1.8 E COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
PADAMMFB_00355 1.2e-08 sacB 2.4.1.10, 2.4.1.9, 3.2.1.26 GH32,GH68 G Belongs to the glycosyl hydrolase 68 family
PADAMMFB_00356 4.4e-112 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PADAMMFB_00357 1.9e-13
PADAMMFB_00358 2.9e-105 clpP 3.4.21.92 OU Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
PADAMMFB_00359 1.2e-74 ylbF S Belongs to the UPF0342 family
PADAMMFB_00360 1.8e-44 ylbG S UPF0298 protein
PADAMMFB_00361 3.1e-212 livJ E COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component
PADAMMFB_00362 1.9e-145 livH E Belongs to the binding-protein-dependent transport system permease family
PADAMMFB_00363 1.4e-138 livM E Belongs to the binding-protein-dependent transport system permease family
PADAMMFB_00364 9.6e-138 livG E COG0411 ABC-type branched-chain amino acid transport systems, ATPase component
PADAMMFB_00365 9.6e-124 livF E COG0410 ABC-type branched-chain amino acid transport systems, ATPase component
PADAMMFB_00366 3.4e-68 acuB S IMP dehydrogenase activity
PADAMMFB_00367 3.3e-43 acuB S IMP dehydrogenase activity
PADAMMFB_00368 2.2e-168 cysK 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
PADAMMFB_00369 1.1e-110 yvyE 3.4.13.9 S YigZ family
PADAMMFB_00370 1.3e-254 comFA L Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
PADAMMFB_00371 4.4e-123 comFC S Competence protein
PADAMMFB_00372 2.1e-94 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PADAMMFB_00380 2.1e-166 ppaC 3.6.1.1 C inorganic pyrophosphatase
PADAMMFB_00381 6.4e-108 S Domain of unknown function (DUF1803)
PADAMMFB_00382 1.3e-101 ygaC J Belongs to the UPF0374 family
PADAMMFB_00383 2.1e-132 recX 2.4.1.337 GT4 S Regulatory protein RecX
PADAMMFB_00384 1.4e-259 rumA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PADAMMFB_00385 8e-193 asnA 6.3.1.1 E aspartate--ammonia ligase
PADAMMFB_00386 2e-255 lysC 2.7.2.4 E Belongs to the aspartokinase family
PADAMMFB_00387 2.1e-114 S Haloacid dehalogenase-like hydrolase
PADAMMFB_00388 2.4e-139 phaB 5.3.3.14, 5.3.3.18 I Belongs to the enoyl-CoA hydratase isomerase family
PADAMMFB_00389 5.8e-71 marR K Transcriptional regulator, MarR family
PADAMMFB_00390 2.3e-173 fabH 2.3.1.180 I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PADAMMFB_00391 3.3e-30 acpP IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
PADAMMFB_00392 2.6e-172 fabK 1.3.1.9 S 2-Nitropropane dioxygenase
PADAMMFB_00393 8.5e-165 fabD 2.3.1.39 I Malonyl CoA-acyl carrier protein transacylase
PADAMMFB_00394 1.6e-126 IQ reductase
PADAMMFB_00395 2e-233 fabF 2.3.1.179 I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
PADAMMFB_00396 7e-57 accB 2.3.1.12, 4.1.1.3 I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
PADAMMFB_00397 4.3e-71 fabZ 3.5.1.108, 4.2.1.59 I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PADAMMFB_00398 1.4e-256 accC 6.3.4.14, 6.4.1.2 I An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
PADAMMFB_00399 4.1e-161 accD 2.1.3.15, 6.4.1.2 I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PADAMMFB_00400 3e-139 accA 2.1.3.15, 6.4.1.2 I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
PADAMMFB_00401 4.7e-90 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
PADAMMFB_00402 3.4e-105 tnp L Transposase
PADAMMFB_00403 1.7e-205 rny D Endoribonuclease that initiates mRNA decay
PADAMMFB_00404 6.8e-84 L Transposase
PADAMMFB_00405 3.6e-113 fruR K transcriptional
PADAMMFB_00406 3.8e-165 pfkB 2.7.1.11, 2.7.1.56 H Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PADAMMFB_00407 0.0 fruA 2.7.1.202 G phosphotransferase system
PADAMMFB_00408 2.7e-260 gor 1.8.1.7 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PADAMMFB_00409 8.1e-243 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PADAMMFB_00411 6.1e-213 iscS2 2.8.1.7 E Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes
PADAMMFB_00412 6.5e-229 thiI 2.8.1.4 H Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PADAMMFB_00413 4.9e-295 gtf1 2.4.1.52 GT4 M An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PADAMMFB_00414 7.2e-258 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PADAMMFB_00415 6.4e-29 2.3.1.128 K acetyltransferase
PADAMMFB_00416 4.5e-49 rplU J This protein binds to 23S rRNA in the presence of protein L20
PADAMMFB_00417 1.5e-46 rpmA J Belongs to the bacterial ribosomal protein bL27 family
PADAMMFB_00418 7.7e-134 ydaF_2 J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PADAMMFB_00419 2.6e-64 WQ51_03320 S cog cog4835
PADAMMFB_00420 9.8e-91 XK27_08360 S EDD domain protein, DegV family
PADAMMFB_00421 3e-139 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
PADAMMFB_00422 9.6e-225 cca 2.7.7.19, 2.7.7.72 J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
PADAMMFB_00423 0.0 yfmR S abc transporter atp-binding protein
PADAMMFB_00424 7.1e-20 U response to pH
PADAMMFB_00425 1.1e-141 3.6.1.13, 3.6.1.55 F AdP-ribose pyrophosphatase
PADAMMFB_00426 1.7e-212 nadD 2.7.1.22, 2.7.7.1, 2.7.7.18, 3.6.1.55 H adenylyltransferase
PADAMMFB_00427 1.8e-256 gdhA 1.4.1.4 E Belongs to the Glu Leu Phe Val dehydrogenases family
PADAMMFB_00428 1e-69 def_1 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
PADAMMFB_00429 1.9e-77 K DNA-binding transcription factor activity
PADAMMFB_00430 0.0 lmrA1 V abc transporter atp-binding protein
PADAMMFB_00431 0.0 lmrA2 V abc transporter atp-binding protein
PADAMMFB_00432 5.4e-45 K Acetyltransferase (GNAT) family
PADAMMFB_00433 1.7e-95 sptS 2.7.13.3 T Histidine kinase
PADAMMFB_00434 4.9e-131 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
PADAMMFB_00435 1.3e-91 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
PADAMMFB_00436 5.3e-161 cvfB S Protein conserved in bacteria
PADAMMFB_00437 7.4e-35 yozE S Belongs to the UPF0346 family
PADAMMFB_00438 6.9e-126 usp 3.5.1.104, 3.5.1.28 CBM50 S pathogenesis
PADAMMFB_00439 6.8e-61 rlpA M LysM domain protein
PADAMMFB_00440 8e-191 phoH T phosphate starvation-inducible protein PhoH
PADAMMFB_00444 0.0 metG 6.1.1.10, 6.1.1.20 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PADAMMFB_00445 1.8e-164 K transcriptional regulator (lysR family)
PADAMMFB_00446 1.4e-186 coiA 3.6.4.12 S Competence protein
PADAMMFB_00447 0.0 pepF E oligoendopeptidase F
PADAMMFB_00448 5.4e-127 yrrM 2.1.1.104 S O-Methyltransferase
PADAMMFB_00449 1.3e-167 prsA 3.1.3.16, 5.2.1.8 O peptidyl-prolyl cis-trans isomerase activity
PADAMMFB_00450 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PADAMMFB_00451 6.7e-23 3.4.17.14, 3.5.1.28 M GBS Bsp-like repeat
PADAMMFB_00452 1.1e-83 3.4.17.14, 3.5.1.28 M GBS Bsp-like repeat
PADAMMFB_00453 3e-63 3.4.17.14, 3.5.1.28 NU amidase activity
PADAMMFB_00454 1.2e-99 3.4.17.14, 3.5.1.28 NU amidase activity
PADAMMFB_00455 4.9e-145 cnhA 3.5.1.3 S Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase
PADAMMFB_00456 1.7e-226 mtnE 2.6.1.83 E mutations do not affect methionine salvage in vivo however
PADAMMFB_00457 1.4e-189 argC 1.2.1.38 E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PADAMMFB_00458 2.6e-222 argJ 2.3.1.1, 2.3.1.35, 2.7.2.8 E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PADAMMFB_00459 2.7e-129 argB 2.7.2.8 E Belongs to the acetylglutamate kinase family. ArgB subfamily
PADAMMFB_00460 4.1e-209 argD 2.6.1.11, 2.6.1.17 E acetylornithine aminotransferase
PADAMMFB_00461 2.5e-129 yxkH G deacetylase
PADAMMFB_00462 2.3e-237 hom 1.1.1.3, 2.7.2.4 E homoserine dehydrogenase
PADAMMFB_00463 7e-153 thrB 2.7.1.39 E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
PADAMMFB_00464 7.9e-152 rarD S Transporter
PADAMMFB_00465 2.4e-14 T peptidase
PADAMMFB_00466 8.9e-14 coiA 3.6.4.12 S Competence protein
PADAMMFB_00467 1.6e-111 S COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PADAMMFB_00468 1.9e-46 2.3.1.128, 5.2.1.8 J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PADAMMFB_00469 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
PADAMMFB_00470 3.2e-16 atpE C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PADAMMFB_00471 3.1e-122 atpB C it plays a direct role in the translocation of protons across the membrane
PADAMMFB_00472 3.3e-78 atpF C ATP synthase F(0) sector subunit b
PADAMMFB_00473 3.5e-86 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PADAMMFB_00474 3.8e-279 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PADAMMFB_00475 2.5e-158 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PADAMMFB_00476 2.7e-263 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PADAMMFB_00477 2e-66 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
PADAMMFB_00478 1.2e-228 ftsW D Belongs to the SEDS family
PADAMMFB_00479 9.5e-225 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PADAMMFB_00480 1.4e-136 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PADAMMFB_00481 2.8e-111 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PADAMMFB_00482 5.4e-161 holB 2.7.7.7 L dna polymerase iii
PADAMMFB_00483 3.1e-134 yaaT S stage 0 sporulation protein
PADAMMFB_00484 9.5e-55 yabA L Involved in initiation control of chromosome replication
PADAMMFB_00485 2.7e-160 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PADAMMFB_00486 2e-191 amt P Ammonium Transporter
PADAMMFB_00487 5e-27 amt P Ammonium Transporter
PADAMMFB_00488 3.1e-44 glnB K Belongs to the P(II) protein family
PADAMMFB_00489 3.2e-105 mur1 NU mannosyl-glycoprotein
PADAMMFB_00490 1.3e-148 XK27_04800 S Sucrose-6F-phosphate phosphohydrolase
PADAMMFB_00491 4.6e-20 S Bacterial inner membrane protein
PADAMMFB_00492 9.5e-93 nptA P COG1283 Na phosphate symporter
PADAMMFB_00493 2.1e-221 nagA 3.5.1.25 G Belongs to the metallo-dependent hydrolases superfamily. NagA family
PADAMMFB_00494 1.8e-53
PADAMMFB_00495 2.8e-25
PADAMMFB_00496 1.5e-59
PADAMMFB_00497 2.5e-45 S membrane
PADAMMFB_00498 4.8e-176 glyQ 6.1.1.14 J glycyl-tRNA synthetase alpha subunit
PADAMMFB_00499 0.0 glyS 6.1.1.14 J Glycyl-tRNA synthetase beta subunit
PADAMMFB_00500 4.5e-39 ynzC S UPF0291 protein
PADAMMFB_00501 1.8e-254 cycA E permease
PADAMMFB_00502 1.1e-09 uvrX 2.7.7.7 L ImpB mucB samB family
PADAMMFB_00503 1.5e-25 2.7.1.208, 2.7.1.211 G protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
PADAMMFB_00504 6.4e-70 pts33BCA G pts system
PADAMMFB_00505 1.1e-76 pts33BCA G pts system
PADAMMFB_00506 5.5e-84 pts33BCA G pts system
PADAMMFB_00507 3.2e-141 ppiA 5.2.1.8 O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PADAMMFB_00512 1.4e-167 fhuR K transcriptional regulator (lysR family)
PADAMMFB_00513 8.8e-78 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PADAMMFB_00514 1.1e-161 rluD 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PADAMMFB_00515 1.1e-87 pyrR 2.4.2.9 F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PADAMMFB_00516 4.9e-227 pyrP F uracil Permease
PADAMMFB_00517 1e-173 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
PADAMMFB_00518 1.1e-211 carA 6.3.5.5 F carbamoyl-phosphate synthetase glutamine chain
PADAMMFB_00519 0.0 carB 6.3.5.5 F carbamoyl-phosphate synthetase ammonia chain
PADAMMFB_00520 2.2e-134 2.1.1.223 S Putative SAM-dependent methyltransferase
PADAMMFB_00521 4e-37 acrA M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PADAMMFB_00522 1.2e-50 V efflux transmembrane transporter activity
PADAMMFB_00523 3.6e-32 V efflux transmembrane transporter activity
PADAMMFB_00524 7e-27 ytrF V efflux transmembrane transporter activity
PADAMMFB_00525 8.2e-77 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PADAMMFB_00526 3e-52 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
PADAMMFB_00527 2.1e-106 L Transposase
PADAMMFB_00528 2.5e-146 M the current gene model (or a revised gene model) may contain a
PADAMMFB_00530 0.0 mdlB V abc transporter atp-binding protein
PADAMMFB_00531 0.0 lmrA V abc transporter atp-binding protein
PADAMMFB_00532 4.6e-199 queA 2.4.99.17 J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PADAMMFB_00533 5.8e-121 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
PADAMMFB_00534 1.1e-166 T signal transduction protein with a C-terminal ATPase domain
PADAMMFB_00535 2.1e-131 rr02 KT response regulator
PADAMMFB_00536 1.4e-190 2.7.7.73, 2.7.7.80 H Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
PADAMMFB_00537 4.8e-168 V ABC transporter
PADAMMFB_00538 5.4e-122 sagI S ABC-2 type transporter
PADAMMFB_00539 6.9e-197 yceA S Belongs to the UPF0176 family
PADAMMFB_00540 1.2e-26 XK27_00085 K Transcriptional
PADAMMFB_00541 3.1e-20
PADAMMFB_00542 1.4e-144 deoD_1 2.4.2.3 F Phosphorylase superfamily
PADAMMFB_00543 3.3e-113 S VIT family
PADAMMFB_00544 7.4e-132 rsuA 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PADAMMFB_00545 6.8e-220 hipO 3.5.1.47 E COG1473 Metal-dependent amidase aminoacylase carboxypeptidase
PADAMMFB_00546 3.4e-17 ald 1.4.1.1 E alanine dehydrogenase activity
PADAMMFB_00547 1e-46 ald 1.4.1.1 C Belongs to the AlaDH PNT family
PADAMMFB_00548 7.5e-247 merA 1.16.1.1 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PADAMMFB_00549 1.7e-102 GBS0088 J protein conserved in bacteria
PADAMMFB_00550 2.5e-142 mvk 1.1.1.88, 2.3.3.10, 2.7.1.36 I mevalonate kinase
PADAMMFB_00551 1e-173 mvaD 4.1.1.33 I diphosphomevalonate decarboxylase
PADAMMFB_00552 1.3e-179 mvaK2 2.7.1.36, 2.7.1.43, 2.7.4.2 I GHMP kinases N terminal domain
PADAMMFB_00553 8.9e-192 fni 1.1.1.88, 5.3.3.2 C Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
PADAMMFB_00554 5.6e-253 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PADAMMFB_00555 4.5e-97 nudF 3.6.1.13 L AdP-ribose pyrophosphatase
PADAMMFB_00556 2.5e-21
PADAMMFB_00557 1.3e-117 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PADAMMFB_00559 3.5e-07 U protein secretion
PADAMMFB_00560 2.7e-50 U protein secretion
PADAMMFB_00562 1.1e-192 dgs 2.4.1.208 GT4 M Glycosyltransferase, group 1 family protein
PADAMMFB_00563 1.8e-248 mgs 2.4.1.337 GT4 M Glycosyltransferase, group 1 family protein
PADAMMFB_00564 4.9e-21 XK27_13030
PADAMMFB_00565 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PADAMMFB_00566 8.9e-57 S hydrolase activity, acting on ester bonds
PADAMMFB_00567 9.4e-71 S hydrolases or acyltransferases (alpha beta hydrolase superfamily)
PADAMMFB_00568 2.8e-165 S Protein of unknown function (DUF3114)
PADAMMFB_00569 1.2e-22 S Protein of unknown function (DUF3114)
PADAMMFB_00570 1.5e-118 yqfA K protein, Hemolysin III
PADAMMFB_00571 1e-25 K hmm pf08876
PADAMMFB_00572 2.9e-232 mvaA 1.1.1.34, 1.1.1.88, 2.3.1.9 C Belongs to the HMG-CoA reductase family
PADAMMFB_00573 1.7e-218 mvaS 2.3.3.10 I synthase
PADAMMFB_00574 2.2e-167 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PADAMMFB_00575 3.4e-91 folA 1.5.1.3, 1.5.1.47, 2.1.1.45, 3.5.4.12 H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PADAMMFB_00576 9.7e-22
PADAMMFB_00577 9.8e-225 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PADAMMFB_00578 3e-110 engB D Necessary for normal cell division and for the maintenance of normal septation
PADAMMFB_00579 1.5e-250 mmuP E amino acid
PADAMMFB_00580 4.5e-177 mmuM 1.5.1.20, 2.1.1.10 H Homocysteine
PADAMMFB_00581 1.4e-29 S Domain of unknown function (DUF1912)
PADAMMFB_00582 3.7e-15 L Helix-hairpin-helix DNA-binding motif class 1
PADAMMFB_00583 1.6e-101 plsY 2.3.1.15, 3.5.1.104 I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PADAMMFB_00584 0.0 parE 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PADAMMFB_00585 0.0 parC 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PADAMMFB_00586 2.4e-200 ilvE 2.6.1.42 E Aminotransferase
PADAMMFB_00587 4.8e-16 S Protein of unknown function (DUF2969)
PADAMMFB_00590 8.4e-205 rpsA 1.17.7.4 J ribosomal protein S1
PADAMMFB_00593 5.5e-44 S Domain of Unknown Function with PDB structure (DUF3862)
PADAMMFB_00594 1.3e-29 S Domain of Unknown Function with PDB structure (DUF3862)
PADAMMFB_00595 5.7e-68 M Pfam SNARE associated Golgi protein
PADAMMFB_00596 6.4e-232 murN 2.3.2.10, 2.3.2.16 V FemAB family
PADAMMFB_00597 1.6e-08 S oxidoreductase
PADAMMFB_00598 9.3e-59 S oxidoreductase
PADAMMFB_00599 9.7e-66 S oxidoreductase
PADAMMFB_00600 3.7e-48 XK27_09445 S Domain of unknown function (DUF1827)
PADAMMFB_00601 1.8e-86 mutT 3.5.4.33, 3.6.1.13, 3.6.1.55 L Belongs to the Nudix hydrolase family
PADAMMFB_00602 0.0 clpE O Belongs to the ClpA ClpB family
PADAMMFB_00603 1.2e-180 argF 2.1.3.3 E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PADAMMFB_00604 1.3e-34 ykuJ S protein conserved in bacteria
PADAMMFB_00605 7.5e-118 WQ51_01820 P Binding-protein-dependent transport system inner membrane component
PADAMMFB_00606 2.2e-131 glnQ 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_00607 1.1e-78 feoA P FeoA domain protein
PADAMMFB_00608 0.0 feoB P transporter of a GTP-driven Fe(2 ) uptake system
PADAMMFB_00609 1.5e-07
PADAMMFB_00610 2.4e-104 1.1.1.133, 5.1.3.13 M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
PADAMMFB_00611 2.2e-45 K sequence-specific DNA binding
PADAMMFB_00612 2.5e-33 yugF I carboxylic ester hydrolase activity
PADAMMFB_00613 7.5e-23 I Alpha/beta hydrolase family
PADAMMFB_00614 1e-156 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PADAMMFB_00615 7e-150 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PADAMMFB_00616 0.0 pbp2b 3.4.16.4 M penicillin-binding protein
PADAMMFB_00617 4.9e-105 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PADAMMFB_00618 4.2e-62 licT K transcriptional antiterminator
PADAMMFB_00619 6.8e-53 licT K transcriptional antiterminator
PADAMMFB_00620 5.9e-88 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PADAMMFB_00621 1.1e-63 dgkA 2.7.1.107, 2.7.1.66 M Diacylglycerol kinase
PADAMMFB_00622 1.3e-165 era M An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PADAMMFB_00623 1.9e-155 fpg 3.2.2.23, 4.2.99.18 L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
PADAMMFB_00624 1.3e-105 coaE 2.7.1.24, 3.2.2.23, 4.2.99.18 GH23 H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PADAMMFB_00625 2.5e-220 mdtG EGP Major facilitator Superfamily
PADAMMFB_00626 2e-33 secG U Preprotein translocase subunit SecG
PADAMMFB_00627 0.0 rnr J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
PADAMMFB_00628 5.6e-80 smpB O the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
PADAMMFB_00629 4.5e-274 ppiB 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PADAMMFB_00630 1.7e-63 yugI 5.3.1.9 J RNA binding protein, contains ribosomal protein S1 domain
PADAMMFB_00631 4.2e-211 pepQ 3.4.13.9 E Belongs to the peptidase M24B family
PADAMMFB_00632 4.4e-183 ccpA K Catabolite control protein A
PADAMMFB_00633 5.2e-27 yyaQ S YjbR
PADAMMFB_00634 2.5e-89 yyaQ V Protein conserved in bacteria
PADAMMFB_00635 1.3e-207 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
PADAMMFB_00636 1e-78 yueI S Protein of unknown function (DUF1694)
PADAMMFB_00637 9.6e-247 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
PADAMMFB_00639 0.0 ltaS 2.7.8.20 M Belongs to the LTA synthase family
PADAMMFB_00640 2e-219 ywbD 2.1.1.191 J Methyltransferase
PADAMMFB_00641 1.1e-121 aroD 1.1.1.25, 4.2.1.10 E Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
PADAMMFB_00642 6.3e-162 aroE 1.1.1.25 E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PADAMMFB_00643 7.7e-202 aroB 2.7.1.71, 4.2.3.4 E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PADAMMFB_00644 4.5e-219 aroC 4.2.3.5 E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PADAMMFB_00645 8.3e-207 tyrA 1.3.1.12, 1.3.1.43 E prephenate dehydrogenase
PADAMMFB_00646 3.2e-53 yheA S Belongs to the UPF0342 family
PADAMMFB_00647 3e-173 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
PADAMMFB_00648 2.6e-236 aroA 1.3.1.12, 1.3.1.43, 2.5.1.19 E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
PADAMMFB_00649 1.7e-87 aroK 1.1.1.25, 2.7.1.71, 4.2.1.10, 4.2.3.4 F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PADAMMFB_00650 6.7e-153 pheA 4.2.1.51 E Prephenate dehydratase
PADAMMFB_00651 9.9e-253 msrR K Transcriptional regulator
PADAMMFB_00652 1.2e-147 ydiA P C4-dicarboxylate transporter malic acid transport protein
PADAMMFB_00653 7e-203 I acyl-CoA dehydrogenase
PADAMMFB_00654 4.5e-97 mip S hydroperoxide reductase activity
PADAMMFB_00655 2.4e-256 rumA 2.1.1.190 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PADAMMFB_00656 4.7e-106
PADAMMFB_00657 1e-31 K Cro/C1-type HTH DNA-binding domain
PADAMMFB_00658 3e-49 dam 2.1.1.72 L D12 class N6 adenine-specific DNA methyltransferase
PADAMMFB_00659 1.5e-25 estA E GDSL-like Lipase/Acylhydrolase
PADAMMFB_00660 8.1e-95
PADAMMFB_00661 0.0 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
PADAMMFB_00662 4.2e-172 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_00663 1.8e-53 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_00664 1.6e-196 S CRISPR-associated protein Csn2 subfamily St
PADAMMFB_00665 1.3e-148 ycgQ S TIGR03943 family
PADAMMFB_00666 3.5e-155 XK27_03015 S permease
PADAMMFB_00668 0.0 yhgF K Transcriptional accessory protein
PADAMMFB_00669 8.4e-41 pspC KT PspC domain
PADAMMFB_00670 2e-169 hprK F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PADAMMFB_00671 4e-147 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PADAMMFB_00673 5.5e-69 ytxH S General stress protein
PADAMMFB_00675 2e-177 yegQ O Peptidase U32
PADAMMFB_00676 3.4e-252 yegQ O Peptidase U32
PADAMMFB_00677 8.1e-46 S CHY zinc finger
PADAMMFB_00678 8.4e-88 bioY S biotin synthase
PADAMMFB_00680 1.1e-33 XK27_12190 S protein conserved in bacteria
PADAMMFB_00681 2.9e-216 mntH P H( )-stimulated, divalent metal cation uptake system
PADAMMFB_00682 1.8e-27 mntH P H( )-stimulated, divalent metal cation uptake system
PADAMMFB_00683 4e-107 L COG2801 Transposase and inactivated derivatives
PADAMMFB_00684 6.6e-38 L transposase activity
PADAMMFB_00685 3.2e-28
PADAMMFB_00686 2.1e-14
PADAMMFB_00687 3.2e-19 pvuIIC K helix-turn-helix
PADAMMFB_00688 2.4e-10
PADAMMFB_00689 7e-68 nudG 3.6.1.55, 3.6.1.65 L Belongs to the Nudix hydrolase family
PADAMMFB_00690 0.0 L helicase
PADAMMFB_00691 9.9e-288 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
PADAMMFB_00692 5e-163 M LysM domain
PADAMMFB_00693 7.6e-16
PADAMMFB_00694 9.8e-174 S hydrolase
PADAMMFB_00695 1.9e-115 pgm6 5.4.2.11, 5.4.2.12 G Phosphoglycerate mutase
PADAMMFB_00696 7.9e-82 ybaK S Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PADAMMFB_00697 4.5e-145 XK27_00880 3.5.1.28 M Glycosyl hydrolase, family 25
PADAMMFB_00698 2.7e-27 P Hemerythrin HHE cation binding domain protein
PADAMMFB_00699 6.1e-114 1.14.14.5 C COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PADAMMFB_00700 1.7e-10 MA20_36090 S Protein of unknown function (DUF2974)
PADAMMFB_00701 1.2e-21 MA20_36090 S Protein of unknown function (DUF2974)
PADAMMFB_00702 0.0 hsdR 3.1.21.3 V Type I restriction enzyme R protein N terminus (HSDR_N)
PADAMMFB_00703 7.6e-107 hsdM 2.1.1.72 V type I restriction-modification system
PADAMMFB_00704 5.8e-127 S Protein conserved in bacteria
PADAMMFB_00705 1.6e-167 hsdM 2.1.1.72 V cog cog0286
PADAMMFB_00706 5.8e-145 hsdS 3.1.21.3 V Type I restriction modification DNA specificity domain
PADAMMFB_00707 4.2e-183 prrC S AAA domain
PADAMMFB_00708 1.8e-28 S PD-(D/E)XK nuclease family transposase
PADAMMFB_00709 1e-46 S double-stranded DNA endodeoxyribonuclease activity
PADAMMFB_00710 2.4e-14 spd F DNA RNA non-specific endonuclease
PADAMMFB_00711 2e-42 spd F DNA RNA non-specific endonuclease
PADAMMFB_00712 3e-69 spd F DNA RNA non-specific endonuclease
PADAMMFB_00713 1.1e-90 lemA S LemA family
PADAMMFB_00714 2e-134 htpX O Belongs to the peptidase M48B family
PADAMMFB_00715 1.8e-73 S Psort location CytoplasmicMembrane, score
PADAMMFB_00716 6.2e-56 S Domain of unknown function (DUF4430)
PADAMMFB_00717 0.0 ppc 4.1.1.31 H Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PADAMMFB_00718 1.2e-183 holA 2.7.7.7 L DNA polymerase III delta subunit
PADAMMFB_00719 8.5e-113 sodA 1.15.1.1 C radicals which are normally produced within the cells and which are toxic to biological systems
PADAMMFB_00720 1.9e-23 L Transposase
PADAMMFB_00721 4.8e-160 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_00722 6.8e-94 L Transposase
PADAMMFB_00723 9.9e-19 S Domain of unknown function (DUF4649)
PADAMMFB_00724 8.3e-31 amd 3.5.1.47 E Peptidase dimerisation domain
PADAMMFB_00725 1.2e-232 cfa 2.1.1.317, 2.1.1.79 M cyclopropane-fatty-acyl-phospholipid synthase
PADAMMFB_00726 2.2e-82
PADAMMFB_00727 4.4e-189 3.5.2.6 V D-alanyl-D-alanine carboxypeptidase
PADAMMFB_00728 4.4e-115 pilD 3.4.23.43 NOU Bacterial Peptidase A24 N-terminal domain
PADAMMFB_00729 3e-82 dps P Belongs to the Dps family
PADAMMFB_00730 1.1e-80 perR P Belongs to the Fur family
PADAMMFB_00731 8.4e-28 yqgQ S protein conserved in bacteria
PADAMMFB_00732 2.2e-179 glk 2.7.1.2 G Glucokinase
PADAMMFB_00733 0.0 typA T GTP-binding protein TypA
PADAMMFB_00735 1.6e-252 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PADAMMFB_00736 1e-201 murG 2.4.1.227 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PADAMMFB_00737 1.8e-177 divIB D Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
PADAMMFB_00738 8e-252 ftsA D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
PADAMMFB_00739 5.4e-237 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PADAMMFB_00740 2.3e-122 ylmE S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PADAMMFB_00741 2e-95 sepF D cell septum assembly
PADAMMFB_00742 2.6e-34 yggT D integral membrane protein
PADAMMFB_00743 4.2e-144 ylmH T S4 RNA-binding domain
PADAMMFB_00744 1.8e-135 divIVA D Cell division protein DivIVA
PADAMMFB_00745 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PADAMMFB_00746 5.5e-30
PADAMMFB_00747 8.4e-10
PADAMMFB_00748 5.5e-231 mntH P Mn2 and Fe2 transporters of the NRAMP family
PADAMMFB_00749 2e-45 rpmE2 J 50S ribosomal protein L31
PADAMMFB_00750 9.8e-177 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
PADAMMFB_00751 1e-184 nrnA 3.1.13.3, 3.1.3.7 S domain protein
PADAMMFB_00752 8.9e-155 gst O Glutathione S-transferase
PADAMMFB_00753 4.6e-188 add 3.5.4.4 F Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PADAMMFB_00754 3.5e-111 tdk 2.7.1.21 F thymidine kinase
PADAMMFB_00755 8.1e-191 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PADAMMFB_00756 3.6e-154 prmB 2.1.1.297, 2.1.1.298 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
PADAMMFB_00757 9.7e-109 ywlC 2.7.7.87, 3.1.3.48 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
PADAMMFB_00758 1.8e-234 glyA 2.1.2.1 E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PADAMMFB_00759 1.2e-177 ndpA S 37-kD nucleoid-associated bacterial protein
PADAMMFB_00760 2.7e-106 pvaA M lytic transglycosylase activity
PADAMMFB_00761 0.0 yfiB1 V abc transporter atp-binding protein
PADAMMFB_00762 0.0 XK27_10035 V abc transporter atp-binding protein
PADAMMFB_00763 1.7e-09 S D-Ala-teichoic acid biosynthesis protein
PADAMMFB_00764 1.4e-297 dltA 6.1.1.13 Q Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PADAMMFB_00765 3.9e-237 dltB M Membrane protein involved in D-alanine export
PADAMMFB_00766 1.7e-35 dltC 6.1.1.13 IQ Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PADAMMFB_00767 4.7e-230 dltD M Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
PADAMMFB_00768 7e-33 L Integrase core domain protein
PADAMMFB_00769 9.6e-32 L transposition
PADAMMFB_00770 5.2e-58 L transposase activity
PADAMMFB_00771 0.0 3.6.3.8 P cation transport ATPase
PADAMMFB_00772 0.0 pabB 2.6.1.85, 4.1.3.27, 4.1.3.38 EH component I
PADAMMFB_00774 0.0 metE 2.1.1.14 E Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PADAMMFB_00775 7.3e-166 metF 1.5.1.20 E reductase
PADAMMFB_00776 0.0 pgm 5.4.2.2, 5.4.2.8 G Phosphoglucomutase
PADAMMFB_00777 1.4e-93 panT S ECF transporter, substrate-specific component
PADAMMFB_00778 4.8e-94 coaBC 4.1.1.36, 6.3.2.5 H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PADAMMFB_00779 1.2e-120 coaB 4.1.1.36, 6.3.2.5 H Phosphopantothenate-cysteine ligase
PADAMMFB_00780 0.0 fhs 6.3.4.3 F Belongs to the formate--tetrahydrofolate ligase family
PADAMMFB_00781 6.4e-66 T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PADAMMFB_00782 2.8e-40 T PhoQ Sensor
PADAMMFB_00783 1.7e-43 T PhoQ Sensor
PADAMMFB_00784 5.8e-79 T PhoQ Sensor
PADAMMFB_00785 2.1e-30 rpsT J rRNA binding
PADAMMFB_00786 1.9e-172 coaA 2.7.1.33 F Pantothenic acid kinase
PADAMMFB_00787 2.4e-104 rsmC 2.1.1.172 J Methyltransferase small domain protein
PADAMMFB_00788 2.3e-26 pdp 2.4.2.2, 2.4.2.4 F Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
PADAMMFB_00789 5.1e-23 pdp 2.4.2.2, 2.4.2.4 F phosphorylase activity
PADAMMFB_00790 1.2e-98 pdp 2.4.2.2, 2.4.2.4 F Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
PADAMMFB_00791 3.2e-22 deoC 4.1.2.4, 5.4.2.8 F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PADAMMFB_00792 1.9e-19 deoC 4.1.2.4, 5.4.2.8 F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PADAMMFB_00793 9.5e-50 cdd 2.4.2.2, 3.5.4.5 F This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis
PADAMMFB_00794 3.6e-191 tcsA S ABC-type transport system, periplasmic component surface lipoprotein
PADAMMFB_00795 3.7e-282 xylG 3.6.3.17 S ABC transporter, ATP-binding protein
PADAMMFB_00796 4.7e-191 yufP S Belongs to the binding-protein-dependent transport system permease family
PADAMMFB_00797 4.8e-171 yufQ S Belongs to the binding-protein-dependent transport system permease family
PADAMMFB_00798 8.9e-121 ycbL 3.1.2.6 S COG0491 Zn-dependent hydrolases, including glyoxylases
PADAMMFB_00799 0.0 dinG 2.7.7.7, 3.6.4.12 L helicase involved in DNA repair and perhaps also replication
PADAMMFB_00800 6.8e-81 ypmB S Protein conserved in bacteria
PADAMMFB_00801 1.6e-216 aspB 2.6.1.1, 2.6.1.14 E Aminotransferase
PADAMMFB_00802 2.9e-262 asnS 6.1.1.22 J Catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PADAMMFB_00803 1.5e-07
PADAMMFB_00804 2.4e-30
PADAMMFB_00805 3e-13
PADAMMFB_00806 3e-63 tdcF 3.5.99.10 J endoribonuclease L-PSP
PADAMMFB_00807 1.5e-123 queC 6.3.4.20 F Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PADAMMFB_00808 3.7e-81 queD 4.1.2.50, 4.2.3.12 H synthase
PADAMMFB_00809 2.5e-135 queE 1.97.1.4, 4.3.99.3 H Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds
PADAMMFB_00810 6.5e-95 queF 1.7.1.13 S Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily
PADAMMFB_00811 2.2e-19 D nuclear chromosome segregation
PADAMMFB_00812 2.8e-137 yejC S cyclic nucleotide-binding protein
PADAMMFB_00813 1.2e-163 rapZ S Displays ATPase and GTPase activities
PADAMMFB_00814 3.6e-182 ybhK S Required for morphogenesis under gluconeogenic growth conditions
PADAMMFB_00815 2.5e-161 whiA K May be required for sporulation
PADAMMFB_00816 6.4e-168 pepD E Dipeptidase
PADAMMFB_00817 5.4e-32 cspD K Cold shock protein domain
PADAMMFB_00818 8e-42 K Cold-Shock Protein
PADAMMFB_00819 1.1e-17 L Transposase
PADAMMFB_00820 0.0 copB 3.6.3.4 P P-type ATPase
PADAMMFB_00821 1.5e-194 3.1.21.3 L Subunit R is required for both nuclease and ATPase activities, but not for modification
PADAMMFB_00822 2.3e-170 mccA 2.5.1.134, 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
PADAMMFB_00823 9.1e-220 metC 2.5.1.48, 4.4.1.1, 4.4.1.2, 4.4.1.8 E cystathionine
PADAMMFB_00824 1.5e-95 cysE 2.3.1.30 E Bacterial transferase hexapeptide (six repeats)
PADAMMFB_00825 3.7e-54 hsdS 2.1.1.72, 3.1.21.3 V type I restriction modification DNA specificity domain
PADAMMFB_00826 1.7e-111 hsdM 2.1.1.72 V type I restriction-modification system
PADAMMFB_00827 3.7e-152 glcU U Glucose uptake
PADAMMFB_00828 1.8e-08 4.2.1.53 S Myosin-crossreactive antigen
PADAMMFB_00829 5.9e-79 hsdM 2.1.1.72 V HsdM N-terminal domain
PADAMMFB_00830 1.5e-75 XK27_10720 D peptidase activity
PADAMMFB_00831 2.1e-133 adcA P Belongs to the bacterial solute-binding protein 9 family
PADAMMFB_00832 3.3e-09 adcA P Belongs to the bacterial solute-binding protein 9 family
PADAMMFB_00833 4.1e-124 adcA P Belongs to the bacterial solute-binding protein 9 family
PADAMMFB_00834 1.7e-08
PADAMMFB_00835 1.3e-18 L Transposase
PADAMMFB_00836 5.7e-41 L Transposase
PADAMMFB_00837 3.3e-115 L Transposase
PADAMMFB_00838 8.7e-171 yeiH S Membrane
PADAMMFB_00839 1.9e-40 mur1 NU amidase activity
PADAMMFB_00840 1.4e-83 L transposition
PADAMMFB_00841 2.6e-166 cpsY K Transcriptional regulator
PADAMMFB_00842 0.0 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PADAMMFB_00843 2.5e-58 phnA P Alkylphosphonate utilization operon protein PhnA
PADAMMFB_00844 5.3e-105 artQ P ABC transporter (Permease
PADAMMFB_00845 1.8e-113 glnQ 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_00846 1.2e-157 aatB ET ABC transporter substrate-binding protein
PADAMMFB_00847 2.1e-73 uvrX 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PADAMMFB_00848 1.9e-110 uvrX 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PADAMMFB_00849 2.1e-07
PADAMMFB_00850 6.6e-62 adhP 1.1.1.1 C alcohol dehydrogenase
PADAMMFB_00851 1.8e-111 adhP 1.1.1.1 C alcohol dehydrogenase
PADAMMFB_00852 2.9e-19 sthIM 2.1.1.72 L Adenine specific DNA methylase Mod
PADAMMFB_00853 3.9e-303 guaA 2.3.1.128, 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
PADAMMFB_00854 2e-126 gntR1 K transcriptional
PADAMMFB_00855 1.1e-53 ylxM S Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PADAMMFB_00856 1.3e-269 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PADAMMFB_00857 4.1e-87 niaX
PADAMMFB_00858 6e-91 niaR S small molecule binding protein (contains 3H domain)
PADAMMFB_00859 8.1e-128 K DNA-binding helix-turn-helix protein
PADAMMFB_00860 1.1e-158 ylqF S Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PADAMMFB_00861 1.4e-136 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PADAMMFB_00862 4.1e-167 GK ROK family
PADAMMFB_00863 8.3e-159 dprA LU DNA protecting protein DprA
PADAMMFB_00864 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PADAMMFB_00865 1.4e-150 S TraX protein
PADAMMFB_00866 2.2e-122 KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PADAMMFB_00867 2.4e-251 T PhoQ Sensor
PADAMMFB_00868 6.6e-259 trmFO 2.1.1.74 J Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PADAMMFB_00869 2.4e-152 XK27_05470 E Methionine synthase
PADAMMFB_00870 1.7e-75 ndk 2.7.4.6 F Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
PADAMMFB_00871 1e-47 pspE P Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PADAMMFB_00872 2.4e-37 IQ Acetoin reductase
PADAMMFB_00873 3.9e-19 IQ Acetoin reductase
PADAMMFB_00874 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
PADAMMFB_00875 1.3e-154 Z012_04635 K Transcriptional activator, Rgg GadR MutR family
PADAMMFB_00878 2.1e-176 pqqE C radical SAM domain protein
PADAMMFB_00879 3.3e-135 speB 3.5.3.11 E hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
PADAMMFB_00880 1.6e-34 EGP Major facilitator Superfamily
PADAMMFB_00881 0.0 alsS 2.2.1.6 EH Belongs to the TPP enzyme family
PADAMMFB_00882 3e-133 budA 4.1.1.5 H Belongs to the alpha-acetolactate decarboxylase family
PADAMMFB_00883 6.4e-104 V ABC transporter (Permease
PADAMMFB_00884 4.1e-114 IQ Belongs to the short-chain dehydrogenases reductases (SDR) family
PADAMMFB_00885 1.6e-10
PADAMMFB_00886 6.9e-98 K Transcriptional regulator, TetR family
PADAMMFB_00887 3.1e-159 czcD P cation diffusion facilitator family transporter
PADAMMFB_00888 2.3e-196 hemH 4.99.1.1, 4.99.1.9 H Catalyzes the ferrous insertion into protoporphyrin IX
PADAMMFB_00889 6.8e-195 adhB 1.1.1.1, 1.1.1.14 E Dehydrogenase
PADAMMFB_00890 6e-08 S Hydrolases of the alpha beta superfamily
PADAMMFB_00891 7.9e-17 S Alpha/beta hydrolase of unknown function (DUF915)
PADAMMFB_00892 3.8e-78 S Alpha/beta hydrolase of unknown function (DUF915)
PADAMMFB_00895 2.6e-143 2.4.2.3 F Phosphorylase superfamily
PADAMMFB_00896 4.1e-118 gph 3.1.3.18 S HAD hydrolase, family IA, variant 1
PADAMMFB_00897 1.8e-24 yclQ P ABC-type enterochelin transport system, periplasmic component
PADAMMFB_00898 3.6e-18 yclQ P ABC-type enterochelin transport system, periplasmic component
PADAMMFB_00899 8.8e-55 dinF V Mate efflux family protein
PADAMMFB_00901 2.3e-309 FbpA K RNA-binding protein homologous to eukaryotic snRNP
PADAMMFB_00902 6.6e-130 S TraX protein
PADAMMFB_00903 1.3e-96 thiJ 2.7.11.1, 3.5.1.124 S DJ-1 family
PADAMMFB_00904 1.3e-148 pyrK C Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( )
PADAMMFB_00905 3.2e-175 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
PADAMMFB_00906 1.2e-180 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_00907 3.7e-54 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_00908 6.8e-133 cas6 S Pfam:DUF2276
PADAMMFB_00909 0.0 csm1 S CRISPR-associated protein Csm1 family
PADAMMFB_00910 5.6e-62 csm2 L Pfam:DUF310
PADAMMFB_00911 1.1e-116 csm3 L RAMP superfamily
PADAMMFB_00912 5.8e-166 csm4 L CRISPR-associated RAMP protein, Csm4 family
PADAMMFB_00913 5.8e-205 csm5 L CRISPR-associated RAMP protein, Csm5 family
PADAMMFB_00914 2.1e-14 csm6 S Psort location Cytoplasmic, score
PADAMMFB_00915 1.2e-73 csm6 S Psort location Cytoplasmic, score
PADAMMFB_00916 2e-126 pyrF 4.1.1.23 F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
PADAMMFB_00917 5.7e-112 pyrE 2.4.2.10, 4.1.1.23 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PADAMMFB_00918 1.2e-46 nylA 3.5.1.4 J Belongs to the amidase family
PADAMMFB_00919 7.9e-266 dtpT E transporter
PADAMMFB_00920 1.4e-62 yecS P ABC transporter (Permease
PADAMMFB_00921 2.3e-20 yecS P amino acid transport
PADAMMFB_00923 8.1e-114 sasH 3.1.3.5, 3.6.1.45 F Belongs to the 5'-nucleotidase family
PADAMMFB_00924 9.8e-35 3.1.3.6, 3.1.4.16 F nucleotide catabolic process
PADAMMFB_00925 1.4e-104 yfiF3 K sequence-specific DNA binding
PADAMMFB_00926 1.6e-247 mnmE S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PADAMMFB_00927 5.3e-240 agcS E (Alanine) symporter
PADAMMFB_00928 0.0 pcrA 3.6.4.12 L ATP-dependent DNA helicase
PADAMMFB_00929 3.5e-241 metY 2.5.1.49 E o-acetylhomoserine
PADAMMFB_00930 1.8e-59 Q phosphatase activity
PADAMMFB_00931 9.3e-62 S haloacid dehalogenase-like hydrolase
PADAMMFB_00932 3.5e-88 tpx 1.11.1.15 O Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PADAMMFB_00933 1.1e-110 hsdS2 2.1.1.72 V Type I restriction modification DNA specificity domain
PADAMMFB_00934 1.7e-96 XK27_04775 S hemerythrin HHE cation binding domain
PADAMMFB_00935 2.6e-49 XK27_04775 S hemerythrin HHE cation binding domain
PADAMMFB_00936 4.9e-151 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PADAMMFB_00937 5.3e-175 ribF 2.7.1.26, 2.7.7.2 H Belongs to the ribF family
PADAMMFB_00938 1.2e-70 spxA 1.20.4.1 K Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
PADAMMFB_00939 1.9e-43 yktA S Belongs to the UPF0223 family
PADAMMFB_00940 5e-142 suhB 3.1.3.25 G Belongs to the inositol monophosphatase superfamily
PADAMMFB_00941 3e-256 rsmF 2.1.1.176, 2.1.1.178 J NOL1 NOP2 sun family protein
PADAMMFB_00942 3.3e-158 pstS P phosphate
PADAMMFB_00943 1.8e-154 pstC P probably responsible for the translocation of the substrate across the membrane
PADAMMFB_00944 1.2e-155 pstA P phosphate transport system permease
PADAMMFB_00945 5.2e-150 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PADAMMFB_00946 1.7e-139 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PADAMMFB_00947 2.4e-113 phoU P Plays a role in the regulation of phosphate uptake
PADAMMFB_00948 0.0 pepN 3.4.11.2 E aminopeptidase
PADAMMFB_00949 7e-195 xerS D Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division
PADAMMFB_00950 2.9e-187 lplA 6.3.1.20 H Lipoate-protein ligase
PADAMMFB_00951 1.1e-17
PADAMMFB_00952 3.7e-09
PADAMMFB_00953 0.0 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PADAMMFB_00954 8.5e-97 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PADAMMFB_00955 3.4e-304 malQ 2.4.1.25 GH77 G 4-alpha-glucanotransferase
PADAMMFB_00956 4.6e-25 tatA U protein secretion
PADAMMFB_00957 1.3e-120 tatC U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PADAMMFB_00958 1.4e-301 ywbL P COG0672 High-affinity Fe2 Pb2 permease
PADAMMFB_00959 5.6e-233 ycdB P peroxidase
PADAMMFB_00960 7.1e-153 ycdO P periplasmic lipoprotein involved in iron transport
PADAMMFB_00961 3e-34 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PADAMMFB_00962 3.7e-85 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PADAMMFB_00963 1.7e-60 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PADAMMFB_00964 1.5e-65 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PADAMMFB_00965 2.4e-134 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PADAMMFB_00966 1.9e-37 3.5.1.28 NU amidase activity
PADAMMFB_00967 8.5e-266 3.5.1.28 NU amidase activity
PADAMMFB_00968 3.6e-82 3.4.17.14, 3.5.1.28 M GBS Bsp-like repeat
PADAMMFB_00969 2.6e-20 3.4.17.14, 3.5.1.28 M GBS Bsp-like repeat
PADAMMFB_00970 0.0 lpdA 1.8.1.4 C Dehydrogenase
PADAMMFB_00971 1.8e-198 acoC 2.3.1.12 C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
PADAMMFB_00972 3.7e-182 acoB 1.2.4.1, 1.2.4.4 C COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
PADAMMFB_00973 6e-185 acoA 1.2.4.1, 1.2.4.4 C Dehydrogenase E1 component
PADAMMFB_00974 3.1e-45 hpk9 2.7.13.3 T protein histidine kinase activity
PADAMMFB_00975 2.2e-83 2.7.13.3 T protein histidine kinase activity
PADAMMFB_00976 3.6e-37 2.7.13.3 T protein histidine kinase activity
PADAMMFB_00977 4.7e-47 2.7.13.3 T protein histidine kinase activity
PADAMMFB_00978 2.8e-160 cas2 2.7.7.7 L CRISPR-associated endoribonuclease Cas2
PADAMMFB_00979 5.8e-169 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_00980 3.2e-110 casE S CRISPR system CASCADE complex protein CasE
PADAMMFB_00981 1e-133 casD S CRISPR system CASCADE complex protein CasD
PADAMMFB_00982 6.8e-182 casC L CT1975-like protein
PADAMMFB_00983 6.6e-102 casB S CRISPR system CASCADE complex protein CasB
PADAMMFB_00984 0.0 casA L An automated process has identified a potential problem with this gene model
PADAMMFB_00985 0.0 cas3 L CRISPR-associated helicase, Cas3
PADAMMFB_00986 0.0 S the current gene model (or a revised gene model) may contain a frame shift
PADAMMFB_00987 6.3e-235 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
PADAMMFB_00988 2.9e-127 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PADAMMFB_00989 8.6e-218 yeaB K Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PADAMMFB_00990 1.2e-157 rssA S Phospholipase, patatin family
PADAMMFB_00991 3.9e-78 estA E GDSL-like protein
PADAMMFB_00992 2.6e-15 estA E Lysophospholipase L1 and related esterases
PADAMMFB_00993 5.3e-292 S unusual protein kinase
PADAMMFB_00994 4.9e-39 S granule-associated protein
PADAMMFB_00995 6e-115 bglH 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PADAMMFB_00996 7.4e-18 bglH 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PADAMMFB_00997 1.3e-199 S hmm pf01594
PADAMMFB_00998 6.2e-44 G alpha-ribazole phosphatase activity
PADAMMFB_00999 7.6e-70 supH 3.1.3.102, 3.1.3.104 Q phosphatase activity
PADAMMFB_01000 2.4e-46 tnp L DDE domain
PADAMMFB_01001 2.4e-235 cps1C S Polysaccharide biosynthesis protein
PADAMMFB_01002 4.9e-94 V VanZ like family
PADAMMFB_01003 5.1e-21 L Transposase
PADAMMFB_01004 8.7e-163 L Transposase
PADAMMFB_01005 7e-212 rgpAc GT4 M Domain of unknown function (DUF1972)
PADAMMFB_01006 1e-60 rfbP 2.7.8.6 M Bacterial sugar transferase
PADAMMFB_01007 6.6e-23 rfbP 2.7.8.6 M Bacterial sugar transferase
PADAMMFB_01008 1.2e-94 cpsD M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
PADAMMFB_01009 4.5e-121 cpsE M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
PADAMMFB_01010 2.9e-107 cpsD D COG0489 ATPases involved in chromosome partitioning
PADAMMFB_01011 1.4e-103 cps4C M biosynthesis protein
PADAMMFB_01012 2.3e-136 cpsB 3.1.3.48 GM Capsular polysaccharide biosynthesis protein
PADAMMFB_01013 8.8e-249 cps4A K Cell envelope-like function transcriptional attenuator common domain protein
PADAMMFB_01014 1.3e-128 deoD 2.4.2.1, 2.4.2.28 F purine nucleoside phosphorylase
PADAMMFB_01015 7e-38 yfeJ 6.3.5.2 F glutamine amidotransferase
PADAMMFB_01016 8.2e-67 yfeJ 6.3.5.2 F glutamine amidotransferase
PADAMMFB_01017 1.3e-148 punA 2.4.2.1 F The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PADAMMFB_01018 8.1e-41 S Protein of unknown function (DUF1697)
PADAMMFB_01019 7.1e-236 deoB 5.4.2.7 G Phosphotransfer between the C1 and C5 carbon atoms of pentose
PADAMMFB_01020 5e-122 rpiA 2.7.1.12, 2.7.1.15, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PADAMMFB_01022 5.7e-08 V Glucan-binding protein C
PADAMMFB_01023 8.5e-23 V Glucan-binding protein C
PADAMMFB_01024 9.1e-112 ung2 3.2.2.27 L Uracil-DNA glycosylase
PADAMMFB_01025 2.4e-275 pepV 3.5.1.18 E Dipeptidase
PADAMMFB_01026 6.4e-27 dmpI 5.3.2.6 G Belongs to the 4-oxalocrotonate tautomerase family
PADAMMFB_01027 1.7e-47 XK27_03610 K Gnat family
PADAMMFB_01028 5.1e-33 L Transposase
PADAMMFB_01029 1.5e-56 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PADAMMFB_01030 8.1e-28 rpmI J Belongs to the bacterial ribosomal protein bL35 family
PADAMMFB_01031 5.9e-86 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PADAMMFB_01032 2.5e-121 cmk 1.17.7.4, 2.5.1.19, 2.7.1.26, 2.7.4.25, 2.7.7.2, 6.3.2.1 F Belongs to the cytidylate kinase family. Type 1 subfamily
PADAMMFB_01033 2.8e-18 M LysM domain
PADAMMFB_01034 1.9e-89 ebsA S Family of unknown function (DUF5322)
PADAMMFB_01035 1.8e-234 pepT 3.4.11.4 E Cleaves the N-terminal amino acid of tripeptides
PADAMMFB_01036 4.2e-98 lepB 3.4.21.89 U Belongs to the peptidase S26 family
PADAMMFB_01037 2.4e-223 G COG0457 FOG TPR repeat
PADAMMFB_01038 6.2e-176 yubA S permease
PADAMMFB_01039 3.5e-93 mutX 3.6.1.55 F NTP pyrophosphohydrolases including oxidative damage repair enzymes
PADAMMFB_01040 3.6e-163 ftsX D Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation
PADAMMFB_01041 2.5e-124 ftsE D cell division ATP-binding protein FtsE
PADAMMFB_01042 1.6e-182 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PADAMMFB_01043 1.2e-202 queG 1.17.99.6 C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PADAMMFB_01044 4.3e-180 yjjH S Calcineurin-like phosphoesterase
PADAMMFB_01045 2e-135 nfrA 1.5.1.38, 1.5.1.39 C nitroreductase
PADAMMFB_01046 0.0 pacL 3.6.3.8 P cation transport ATPase
PADAMMFB_01047 2.6e-67 ywiB S Domain of unknown function (DUF1934)
PADAMMFB_01048 4.9e-50 XK27_00115 2.3.1.128 K Acetyltransferase GNAT family
PADAMMFB_01049 9.2e-147 yidA S hydrolases of the HAD superfamily
PADAMMFB_01050 9e-231 murM 2.3.2.10, 2.3.2.16 V protein involved in methicillin resistance
PADAMMFB_01051 1e-153 vicX 3.1.26.11 S Metal-dependent hydrolases of the beta-lactamase superfamily I
PADAMMFB_01052 4.5e-247 vicK 2.7.13.3 T Histidine kinase
PADAMMFB_01053 9.9e-129 KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PADAMMFB_01054 1.4e-136 glnQ 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_01055 4.5e-149 peb1A ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PADAMMFB_01056 5.9e-118 gltJ P ABC transporter (Permease
PADAMMFB_01057 1.7e-111 tcyB_2 P ABC transporter (permease)
PADAMMFB_01058 2.4e-124 endA F DNA RNA non-specific endonuclease
PADAMMFB_01059 1.2e-25 epuA S DNA-directed RNA polymerase subunit beta
PADAMMFB_01060 6.1e-230 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PADAMMFB_01062 2.3e-195 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PADAMMFB_01063 6.4e-20 G Domain of unknown function (DUF4832)
PADAMMFB_01064 2.1e-203 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PADAMMFB_01065 1.6e-174 birA 6.3.4.15 HK Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
PADAMMFB_01066 1.2e-294 dnaX 2.7.7.7 L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PADAMMFB_01067 6.1e-88 ytsP 1.8.4.14 T GAF domain-containing protein
PADAMMFB_01068 1.3e-165 miaA 2.5.1.75 J Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PADAMMFB_01069 1.2e-19 WQ51_02665 S Protein of unknown function (DUF3042)
PADAMMFB_01071 7.7e-35
PADAMMFB_01074 5.4e-203 S Phage integrase family
PADAMMFB_01076 8.5e-57 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
PADAMMFB_01077 1.1e-215 XK27_05110 P chloride
PADAMMFB_01078 8.7e-41 pheA 1.3.1.12, 2.3.1.79, 4.2.1.51, 5.4.99.5 E Chorismate mutase
PADAMMFB_01079 1.3e-282 clcA P Chloride transporter, ClC family
PADAMMFB_01080 2.3e-75 fld C Flavodoxin
PADAMMFB_01081 1.1e-14 XK27_08880
PADAMMFB_01082 4.7e-126 XK27_08875 O Zinc-dependent metalloprotease
PADAMMFB_01083 2e-151 estA CE1 S Putative esterase
PADAMMFB_01084 1.1e-308 rnjB S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PADAMMFB_01085 4.4e-135 XK27_08845 S abc transporter atp-binding protein
PADAMMFB_01086 5.2e-148 XK27_08840 S Belongs to the binding-protein-dependent transport system permease family
PADAMMFB_01087 3.3e-178 XK27_08835 S ABC transporter substrate binding protein
PADAMMFB_01089 1.7e-11 Q the current gene model (or a revised gene model) may contain a frame shift
PADAMMFB_01090 1.1e-27 Q the current gene model (or a revised gene model) may contain a frame shift
PADAMMFB_01091 1.9e-275 pyk 2.7.1.40, 2.7.7.4 G Belongs to the pyruvate kinase family
PADAMMFB_01092 1.2e-188 pfkA 2.7.1.11 F Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
PADAMMFB_01093 0.0 dnaE 2.7.7.7 L DNA polymerase
PADAMMFB_01094 1.4e-152 sua5 2.7.7.87 J Belongs to the SUA5 family
PADAMMFB_01095 3.1e-112 leuD 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PADAMMFB_01096 1.2e-274 leuC 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PADAMMFB_01097 2.5e-43 ysdA L Membrane
PADAMMFB_01098 6.6e-190 leuB 1.1.1.85 CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
PADAMMFB_01099 3.4e-291 leuA 2.3.3.13 E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PADAMMFB_01100 4.6e-131 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PADAMMFB_01101 3.6e-179 pyrD 1.3.1.14, 1.3.98.1 F Catalyzes the conversion of dihydroorotate to orotate
PADAMMFB_01103 2.8e-39 hup L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PADAMMFB_01104 1.7e-83 ypmS S Protein conserved in bacteria
PADAMMFB_01105 3.9e-143 ypmR E lipolytic protein G-D-S-L family
PADAMMFB_01106 1.5e-147 DegV S DegV family
PADAMMFB_01107 5.8e-305 recN L May be involved in recombinational repair of damaged DNA
PADAMMFB_01108 1.8e-72 argR K Regulates arginine biosynthesis genes
PADAMMFB_01109 4.7e-157 rrmJ 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
PADAMMFB_01110 6.6e-159 ispA 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 H Belongs to the FPP GGPP synthase family
PADAMMFB_01111 3.5e-29 xseB 3.1.11.6 L exodeoxyribonuclease VII activity
PADAMMFB_01112 2.6e-247 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PADAMMFB_01114 3.4e-120 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PADAMMFB_01115 3.8e-125 dnaD
PADAMMFB_01116 9.3e-183 metA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PADAMMFB_01117 2e-94 apt 2.4.2.22, 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PADAMMFB_01118 0.0 recJ L Single-strand DNA-specific exonuclease, C terminal domain
PADAMMFB_01119 2.4e-136 XK27_05435 1.1.1.100 S Belongs to the short-chain dehydrogenases reductases (SDR) family
PADAMMFB_01120 2e-174 rnz 3.1.26.11 S Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
PADAMMFB_01121 1.2e-117 galT 2.7.7.12 G UDPglucose--hexose-1-phosphate uridylyltransferase
PADAMMFB_01122 1.2e-222 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PADAMMFB_01123 7.8e-234 rodA D Belongs to the SEDS family
PADAMMFB_01124 1.8e-50 hisE 3.5.4.19, 3.6.1.31, 5.3.1.16 E Phosphoribosyl-ATP
PADAMMFB_01125 5.5e-61 hisI 3.5.4.19, 3.5.4.25, 3.6.1.31, 5.3.1.16 E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PADAMMFB_01126 9.6e-138 hisF 3.5.4.19, 3.6.1.31 E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
PADAMMFB_01127 1.7e-131 hisA 5.3.1.16 E 1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PADAMMFB_01128 1.6e-111 hisH E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PADAMMFB_01129 2.2e-105 hisB 1.1.1.23, 2.6.1.9, 3.1.3.15, 4.2.1.19 E imidazoleglycerol-phosphate dehydratase
PADAMMFB_01130 2.6e-228 hisD 1.1.1.23, 1.1.1.308 E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PADAMMFB_01131 1.4e-116 hisG 2.4.2.17 E Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity
PADAMMFB_01132 5.7e-183 hisZ 2.4.2.17, 6.1.1.21 E Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
PADAMMFB_01133 4.1e-195 hisC 2.6.1.9 E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PADAMMFB_01135 2.5e-21 XK27_08085
PADAMMFB_01136 2.6e-84 XK27_08080 3.1.1.53 G Exopolysaccharide biosynthesis protein
PADAMMFB_01137 2.3e-09 XK27_08080 3.1.1.53 G Exopolysaccharide biosynthesis protein
PADAMMFB_01138 7.6e-140 hisK 3.1.3.15 E Histidinol phosphatase and related hydrolases of the PHP family
PADAMMFB_01139 1.1e-121 ylfI S tigr01906
PADAMMFB_01140 5.9e-143 nagD 2.7.1.25, 3.1.3.41 G Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
PADAMMFB_01141 6.7e-144 fat 3.1.2.21 I Acyl-ACP thioesterase
PADAMMFB_01142 2.6e-216 hemN H Involved in the biosynthesis of porphyrin-containing compound
PADAMMFB_01145 1.9e-205 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PADAMMFB_01146 8.3e-113 rmlC 1.1.1.133, 5.1.3.13 M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
PADAMMFB_01147 1.9e-161 rfbA 2.7.7.24 M Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PADAMMFB_01148 6.3e-207 yurR 1.4.5.1 E oxidoreductase
PADAMMFB_01149 6.4e-29 zupT P transporter
PADAMMFB_01150 2.3e-14 zupT P Mediates zinc uptake. May also transport other divalent cations
PADAMMFB_01151 9.6e-149 yqfO 3.5.4.16 S Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PADAMMFB_01152 2.7e-123 trmK 2.1.1.217 S SAM-dependent methyltransferase
PADAMMFB_01153 1.3e-70 gtrA S GtrA-like protein
PADAMMFB_01154 3.7e-249 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PADAMMFB_01155 6e-169 ybbR S Protein conserved in bacteria
PADAMMFB_01156 5.6e-124 dacA 2.7.7.85 S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PADAMMFB_01157 7.5e-255 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Mur ligase, middle domain protein
PADAMMFB_01158 8.7e-150 cobQ S glutamine amidotransferase
PADAMMFB_01159 0.0 mprF 2.3.2.3 J Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PADAMMFB_01160 2.2e-131 pip 1.11.1.10 S Alpha beta hydrolase
PADAMMFB_01161 0.0 uup S abc transporter atp-binding protein
PADAMMFB_01162 2.1e-114 udk 2.7.1.48 F Cytidine monophosphokinase
PADAMMFB_01163 1.6e-178 yfmL 3.6.4.13 L DEAD DEAH box helicase
PADAMMFB_01164 4.8e-28 6.3.2.2, 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
PADAMMFB_01165 8.6e-265 gapN 1.2.1.9 C Belongs to the aldehyde dehydrogenase family
PADAMMFB_01166 0.0 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PADAMMFB_01167 7.9e-39 ptsH G phosphocarrier protein Hpr
PADAMMFB_01168 9.7e-222 icd 1.1.1.42 C Isocitrate dehydrogenase
PADAMMFB_01169 1.5e-211 citZ 2.3.3.1 C Belongs to the citrate synthase family
PADAMMFB_01170 0.0 acnA 4.2.1.3 C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
PADAMMFB_01171 2.2e-34 nrdH O Glutaredoxin
PADAMMFB_01172 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PADAMMFB_01173 1.7e-184 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PADAMMFB_01175 1.7e-72 L Transposase (IS116 IS110 IS902 family)
PADAMMFB_01176 3.6e-61 L Transposase (IS116 IS110 IS902 family)
PADAMMFB_01177 4e-165 ypuA S secreted protein
PADAMMFB_01178 1.1e-55 yaeR E COG0346 LactoylglutaTHIone lyase and related lyases
PADAMMFB_01179 5.1e-131 srtA 3.4.22.70 M Sortase (surface protein transpeptidase)
PADAMMFB_01180 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PADAMMFB_01181 1.1e-181 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
PADAMMFB_01182 2.2e-257 noxE P NADH oxidase
PADAMMFB_01183 9.5e-294 yfmM S abc transporter atp-binding protein
PADAMMFB_01184 3.3e-82 XK27_01265 S ECF-type riboflavin transporter, S component
PADAMMFB_01185 8.7e-85 pdxK 2.7.1.35 H Belongs to the pyridoxine kinase family
PADAMMFB_01186 4.5e-44 pdxK 2.7.1.35 H Belongs to the pyridoxine kinase family
PADAMMFB_01187 2e-86 S ECF-type riboflavin transporter, S component
PADAMMFB_01189 2.9e-240 XK27_08130 K Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
PADAMMFB_01190 2e-55 nrdD_1 1.1.98.6, 1.17.4.1 F Ribonucleoside-triphosphate reductase
PADAMMFB_01193 0.0 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PADAMMFB_01194 4.6e-91 paiA 2.3.1.57 K COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PADAMMFB_01195 1.2e-196 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PADAMMFB_01196 0.0 smc D Required for chromosome condensation and partitioning
PADAMMFB_01197 1.9e-124 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
PADAMMFB_01198 2.3e-173 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PADAMMFB_01199 8.1e-199 asd 1.2.1.11 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PADAMMFB_01200 1.7e-78 alkD L Dna alkylation repair
PADAMMFB_01201 2.4e-92 pat 2.3.1.183 M acetyltransferase
PADAMMFB_01202 1.1e-12
PADAMMFB_01203 9e-278 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PADAMMFB_01204 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
PADAMMFB_01205 3.1e-127 yjjG 3.1.3.102, 3.1.3.104, 3.1.3.5, 3.8.1.2 E hydrolase
PADAMMFB_01206 1.2e-62 bioY S biotin transmembrane transporter activity
PADAMMFB_01207 9.8e-88 proW P Binding-protein-dependent transport system inner membrane component
PADAMMFB_01208 1.5e-138 proV E abc transporter atp-binding protein
PADAMMFB_01209 2e-169 proX M ABC transporter, substrate-binding protein, QAT family
PADAMMFB_01210 2.5e-110 proWZ P ABC transporter (Permease
PADAMMFB_01211 1.2e-280 hutH 4.3.1.3 E Histidine ammonia-lyase
PADAMMFB_01212 1.6e-205 S Protein of unknown function (DUF917)
PADAMMFB_01213 1.3e-309 hutU 4.2.1.49 E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
PADAMMFB_01214 1.6e-59 sdaAB 4.3.1.17 E L-serine dehydratase
PADAMMFB_01215 4.4e-101 desR K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PADAMMFB_01216 4.1e-190 desK 2.7.13.3 T Histidine kinase
PADAMMFB_01217 3.4e-132 yvfS V ABC-2 type transporter
PADAMMFB_01218 2.3e-159 XK27_09825 V 'abc transporter, ATP-binding protein
PADAMMFB_01222 4.3e-60 EGP Major facilitator Superfamily
PADAMMFB_01223 3.7e-122 S An automated process has identified a potential problem with this gene model
PADAMMFB_01224 6.1e-26 XK27_09825 V 'abc transporter, ATP-binding protein
PADAMMFB_01225 1.4e-15 liaI KT membrane
PADAMMFB_01226 1.5e-30 liaI KT membrane
PADAMMFB_01227 2.5e-81 XK27_05000 S Fe-S-cluster oxidoreductase
PADAMMFB_01228 0.0 V ABC transporter (permease)
PADAMMFB_01229 1.9e-133 macB2 V ABC transporter, ATP-binding protein
PADAMMFB_01230 6.2e-166 T Histidine kinase
PADAMMFB_01231 3.9e-122 KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PADAMMFB_01232 2e-77 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
PADAMMFB_01233 3.3e-69 pbuX F xanthine permease
PADAMMFB_01234 3.9e-117 pbuX F xanthine permease
PADAMMFB_01235 7.6e-247 norM V Multidrug efflux pump
PADAMMFB_01236 4.3e-188 msrA 1.8.4.11, 1.8.4.12 O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PADAMMFB_01237 2.6e-85 yxeM ET Belongs to the bacterial solute-binding protein 3 family
PADAMMFB_01238 2.9e-198 pcaB 4.3.2.2 F Adenylosuccinate lyase
PADAMMFB_01239 1.9e-93 yxeO 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_01240 4.1e-63 yxeN U ABC transporter, permease protein
PADAMMFB_01241 2e-57 yxeL K Acetyltransferase (GNAT) domain
PADAMMFB_01242 3e-115 yxeQ S MmgE/PrpD family
PADAMMFB_01243 1.1e-148 ykrV3 2.6.1.83 E mutations do not affect methionine salvage in vivo however
PADAMMFB_01244 6.7e-42 gldA 1.1.1.1, 1.1.1.6 C glycerol dehydrogenase
PADAMMFB_01245 3.4e-50 gldA 1.1.1.1, 1.1.1.6 C glycerol dehydrogenase
PADAMMFB_01246 3.2e-07 gldA 1.1.1.1, 1.1.1.6 C glycerol dehydrogenase
PADAMMFB_01247 3e-183 hipO E COG1473 Metal-dependent amidase aminoacylase carboxypeptidase
PADAMMFB_01248 3.3e-234 brnQ E Component of the transport system for branched-chain amino acids
PADAMMFB_01249 9.4e-65 manA 5.3.1.8 G mannose-6-phosphate isomerase
PADAMMFB_01250 8.2e-57 manA 5.3.1.8 G mannose-6-phosphate isomerase
PADAMMFB_01251 4.8e-25 csbD K CsbD-like
PADAMMFB_01252 6.2e-228 yfnA E amino acid
PADAMMFB_01253 2.2e-108 XK27_02070 S nitroreductase
PADAMMFB_01254 9.5e-150 1.13.11.2 S glyoxalase
PADAMMFB_01255 5.6e-77 ywnA K Transcriptional regulator
PADAMMFB_01256 1.2e-157 E Alpha/beta hydrolase of unknown function (DUF915)
PADAMMFB_01257 1e-232 pts13C G The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PADAMMFB_01258 2.2e-111 drgA C Nitroreductase
PADAMMFB_01259 1.6e-87 yoaK S Protein of unknown function (DUF1275)
PADAMMFB_01260 6.8e-161 yvgN C reductase
PADAMMFB_01261 9.4e-155 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PADAMMFB_01262 2e-280 XK27_07020 S Belongs to the UPF0371 family
PADAMMFB_01264 1.1e-37 BP1961 P nitric oxide dioxygenase activity
PADAMMFB_01265 3.8e-28 K response regulator
PADAMMFB_01266 7.2e-16 KT the current gene model (or a revised gene model) may contain a frame shift
PADAMMFB_01267 9.3e-72 S Signal peptide protein, YSIRK family
PADAMMFB_01269 4.5e-61
PADAMMFB_01270 1.8e-270 uvrX 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PADAMMFB_01271 1e-137
PADAMMFB_01272 5.8e-109 MA20_06410 E LysE type translocator
PADAMMFB_01273 2.7e-09
PADAMMFB_01274 0.0 M family 8
PADAMMFB_01276 9.5e-22 hrtB V ABC transporter permease
PADAMMFB_01277 7.7e-16 devA 3.6.3.25 V COG1136 ABC-type antimicrobial peptide transport system, ATPase component
PADAMMFB_01278 1.5e-48 hrtB V ABC transporter (Permease
PADAMMFB_01279 3.7e-117 devA 3.6.3.25 V abc transporter atp-binding protein
PADAMMFB_01280 1.6e-18 L Integrase core domain
PADAMMFB_01281 9.9e-231 L Transposase
PADAMMFB_01282 2.4e-151 V MatE
PADAMMFB_01284 1.5e-39 C Fe-S oxidoreductases
PADAMMFB_01285 2.2e-145 L Integrase core domain protein
PADAMMFB_01286 1.8e-87 L transposase activity
PADAMMFB_01288 2.8e-85
PADAMMFB_01289 0.0 sbcC L ATPase involved in DNA repair
PADAMMFB_01290 1.5e-230 sbcD L SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
PADAMMFB_01291 0.0 lacL 3.2.1.23 G -beta-galactosidase
PADAMMFB_01292 0.0 lacS G transporter
PADAMMFB_01293 1.7e-201 galM 5.1.3.3 G Catalyzes the interconversion of alpha and beta anomers of maltose
PADAMMFB_01294 1.1e-194 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PADAMMFB_01295 1.6e-293 galT 2.7.7.12 G UDPglucose--hexose-1-phosphate uridylyltransferase
PADAMMFB_01296 6e-219 galK 2.7.1.6 G Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PADAMMFB_01297 2.3e-184 galR K Transcriptional regulator
PADAMMFB_01298 2.7e-08 L Integrase core domain protein
PADAMMFB_01299 1.2e-25 L transposition
PADAMMFB_01300 1.3e-182 M translation initiation factor activity
PADAMMFB_01301 1e-33 rtxA M M26 IgA1-specific Metallo-endopeptidase C-terminal region
PADAMMFB_01302 4.6e-18 rtxA M M26 IgA1-specific Metallo-endopeptidase C-terminal region
PADAMMFB_01303 1e-102 V abc transporter atp-binding protein
PADAMMFB_01304 4.3e-40 V abc transporter atp-binding protein
PADAMMFB_01305 0.0 gshF 6.3.2.2, 6.3.2.29, 6.3.2.30, 6.3.2.4 H Belongs to the glutamate--cysteine ligase type 1 family
PADAMMFB_01306 2.3e-87 L Transposase
PADAMMFB_01307 0.0 ftsK D Belongs to the FtsK SpoIIIE SftA family
PADAMMFB_01308 5.9e-188 trxB1 1.18.1.2, 1.19.1.1 C Ferredoxin--NADP reductase
PADAMMFB_01309 2.1e-134 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
PADAMMFB_01310 5.8e-94 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PADAMMFB_01313 2.2e-114 vraR K Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PADAMMFB_01314 5.8e-175 vraS 2.7.13.3 T Histidine kinase
PADAMMFB_01315 3.7e-120 yvqF KT membrane
PADAMMFB_01316 0.0 prkC 2.7.11.1 KLT serine threonine protein kinase
PADAMMFB_01317 2e-132 stp 3.1.3.16 T phosphatase
PADAMMFB_01318 4.4e-247 sun 2.1.1.176 J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PADAMMFB_01319 2.5e-172 fmt 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PADAMMFB_01320 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PADAMMFB_01321 2.7e-46 rpoZ 2.7.7.6 K DNA-directed 5'-3' RNA polymerase activity
PADAMMFB_01322 9.8e-112 gmk 2.7.4.8 F Essential for recycling GMP and indirectly, cGMP
PADAMMFB_01323 2.8e-212 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
PADAMMFB_01324 3.4e-149 XK27_02985 S overlaps another CDS with the same product name
PADAMMFB_01325 4.8e-148 supH S overlaps another CDS with the same product name
PADAMMFB_01326 8.6e-63 yvoA_1 K Transcriptional
PADAMMFB_01327 9.8e-121 skfE V abc transporter atp-binding protein
PADAMMFB_01328 5.6e-133 V ATPase activity
PADAMMFB_01329 1.2e-171 oppF P Belongs to the ABC transporter superfamily
PADAMMFB_01330 2.2e-204 oppD P Belongs to the ABC transporter superfamily
PADAMMFB_01331 4.9e-168 amiD P ABC transporter (Permease
PADAMMFB_01332 4.2e-278 amiC P ABC transporter (Permease
PADAMMFB_01333 3.6e-103 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_01334 3.6e-157 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_01335 0.0 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_01336 4e-44 L Transposase
PADAMMFB_01337 4.1e-158 L COG2801 Transposase and inactivated derivatives
PADAMMFB_01338 3.5e-24 oppF P Belongs to the ABC transporter superfamily
PADAMMFB_01339 8.9e-40 tatD L Hydrolase, tatd
PADAMMFB_01340 1.5e-217 oxlT P COG0477 Permeases of the major facilitator superfamily
PADAMMFB_01341 2.1e-85 L PFAM Integrase catalytic region
PADAMMFB_01342 1.6e-22 L Transposase
PADAMMFB_01343 3.3e-39 L transposase activity
PADAMMFB_01344 1.4e-181 pta 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
PADAMMFB_01345 2.8e-173 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
PADAMMFB_01346 5.4e-150 nadK 2.7.1.23 H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PADAMMFB_01347 5.5e-121 yjbM 2.7.6.5 S Gtp pyrophosphokinase
PADAMMFB_01348 1.5e-103 yjbK S Adenylate cyclase
PADAMMFB_01349 2.1e-177 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PADAMMFB_01350 7e-206 iscS 2.8.1.7 E Cysteine desulfurase
PADAMMFB_01351 2e-58 XK27_04120 S Putative amino acid metabolism
PADAMMFB_01352 1.5e-118 rex K Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PADAMMFB_01353 1.6e-131 puuD T peptidase C26
PADAMMFB_01354 4.6e-115 radC E Belongs to the UPF0758 family
PADAMMFB_01355 3.8e-272 rgpF M Rhamnan synthesis protein F
PADAMMFB_01356 9.9e-222 rgpD 3.6.3.38 P Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system
PADAMMFB_01357 3.7e-140 rgpC GM Transport permease protein
PADAMMFB_01358 1.8e-170 rgpB GT2 M Glycosyltransferase, group 2 family protein
PADAMMFB_01359 1.2e-221 rgpA GT4 M Domain of unknown function (DUF1972)
PADAMMFB_01360 8.7e-66 S Glucosyl transferase GtrII
PADAMMFB_01361 6.2e-219 GT4 M transferase activity, transferring glycosyl groups
PADAMMFB_01362 4.2e-226 M Psort location CytoplasmicMembrane, score
PADAMMFB_01363 0.0 rgpF GT2,GT4 M Glycosyltransferase like family 2
PADAMMFB_01364 1.2e-151 2.4.1.60 S Glycosyltransferase group 2 family protein
PADAMMFB_01365 4.6e-42 S Uncharacterized conserved protein (DUF2304)
PADAMMFB_01366 4.5e-129 arnC M group 2 family protein
PADAMMFB_01367 3.3e-169 cpsIaJ S Glycosyltransferase like family 2
PADAMMFB_01368 2.3e-184 S Glycosyltransferase like family 2
PADAMMFB_01369 1.6e-219 amrA S membrane protein involved in the export of O-antigen and teichoic acid
PADAMMFB_01370 4e-161 rfbD 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
PADAMMFB_01371 6.1e-217 S Predicted membrane protein (DUF2142)
PADAMMFB_01372 1.7e-168 yfdH GT2 M COG0463, glycosyltransferases involved in cell wall biogenesis
PADAMMFB_01373 3.4e-55 yitW K metal-sulfur cluster biosynthetic enzyme
PADAMMFB_01374 5.2e-201 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PADAMMFB_01375 0.0 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
PADAMMFB_01376 3.3e-46 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
PADAMMFB_01377 1.2e-19 rpsU J Belongs to the bacterial ribosomal protein bS21 family
PADAMMFB_01378 4.2e-136 gltS ET Belongs to the bacterial solute-binding protein 3 family
PADAMMFB_01379 4e-201 arcT 2.6.1.1 E Aminotransferase
PADAMMFB_01380 4.2e-136 ET ABC transporter
PADAMMFB_01381 2.9e-94 ET Belongs to the bacterial solute-binding protein 3 family
PADAMMFB_01382 2.9e-84 mutT 3.6.1.55 F Nudix family
PADAMMFB_01383 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
PADAMMFB_01385 1.1e-56 V CAAX protease self-immunity
PADAMMFB_01386 2.4e-33 S CAAX amino terminal protease family protein
PADAMMFB_01387 0.0 glnP P ABC-type amino acid transport signal transduction systems periplasmic component domain
PADAMMFB_01388 1.1e-135 glnQ 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_01389 1.1e-16 XK27_00735
PADAMMFB_01390 1.8e-248 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PADAMMFB_01392 2.3e-133 rsuA 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PADAMMFB_01396 5.5e-65 paaI Q protein possibly involved in aromatic compounds catabolism
PADAMMFB_01397 3e-37 ycaO O OsmC-like protein
PADAMMFB_01399 1.6e-152 EG Permeases of the drug metabolite transporter (DMT) superfamily
PADAMMFB_01400 1.3e-114 serB 3.1.3.3 E phosphoserine phosphatase
PADAMMFB_01401 4.3e-303 ezrA D modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
PADAMMFB_01402 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PADAMMFB_01403 1.1e-107 3.1.3.18 S IA, variant 1
PADAMMFB_01404 2.2e-117 lrgB M effector of murein hydrolase
PADAMMFB_01405 5e-55 lrgA S Effector of murein hydrolase LrgA
PADAMMFB_01407 5.4e-59 arsC 1.20.4.1 P Belongs to the ArsC family
PADAMMFB_01408 1.5e-52 ogt 2.1.1.63, 3.2.2.20 L methylated-DNA-[protein]-cysteine S-methyltransferase activity
PADAMMFB_01409 7.7e-219 serA 1.1.1.399, 1.1.1.95 EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PADAMMFB_01410 3.9e-104 wecD M Acetyltransferase GNAT family
PADAMMFB_01411 1.3e-209 serC 2.6.1.52 E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PADAMMFB_01412 5.1e-96 GK ROK family
PADAMMFB_01413 8.1e-72 gloA 4.4.1.5 E Lactoylglutathione lyase
PADAMMFB_01414 1.7e-47 XK27_08050 O stress-induced mitochondrial fusion
PADAMMFB_01415 1.3e-19 XK27_08050 O HflC and HflK could regulate a protease
PADAMMFB_01416 2.3e-206 potD P spermidine putrescine ABC transporter
PADAMMFB_01417 3e-134 potC P ABC-type spermidine putrescine transport system, permease component II
PADAMMFB_01418 3.7e-140 potB P ABC-type spermidine putrescine transport system, permease component I
PADAMMFB_01419 1.2e-213 potA 3.6.3.30, 3.6.3.31 P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
PADAMMFB_01420 7.8e-171 murB 1.3.1.98 M cell wall formation
PADAMMFB_01421 2.9e-87 folK 2.7.6.3, 4.1.2.25 H 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PADAMMFB_01422 1.2e-61 folB 1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8 H Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PADAMMFB_01423 3e-297 amy 3.2.1.1 GH13 G Belongs to the glycosyl hydrolase 13 family
PADAMMFB_01424 1.2e-146 folP 2.5.1.15, 2.7.6.3 H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PADAMMFB_01425 1e-99 folE 3.5.4.16 F gtp cyclohydrolase
PADAMMFB_01426 0.0 ydaO E amino acid
PADAMMFB_01427 5.5e-239 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PADAMMFB_01428 4.1e-37 ylqC L Belongs to the UPF0109 family
PADAMMFB_01429 2.4e-43 rpsP J Belongs to the bacterial ribosomal protein bS16 family
PADAMMFB_01430 2e-171 tehB 2.1.1.265 PQ tellurite resistance protein tehb
PADAMMFB_01431 2.4e-158 xth 3.1.11.2 L exodeoxyribonuclease III
PADAMMFB_01432 2.1e-74 S QueT transporter
PADAMMFB_01433 1.9e-55 L Transposase
PADAMMFB_01434 5.7e-186 yegS 2.7.1.107 I Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
PADAMMFB_01435 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PADAMMFB_01436 3.7e-85 ccl S cog cog4708
PADAMMFB_01437 4.9e-160 rbn E Belongs to the UPF0761 family
PADAMMFB_01438 1.5e-166 map 3.4.11.18 E Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed
PADAMMFB_01439 3.3e-231 ytoI K transcriptional regulator containing CBS domains
PADAMMFB_01440 2.4e-98 XK27_07830 2.3.1.128 J Acetyltransferase GNAT Family
PADAMMFB_01441 1.3e-232 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PADAMMFB_01442 0.0 comEC S Competence protein ComEC
PADAMMFB_01443 1.2e-97 comEA L COG1555 DNA uptake protein and related DNA-binding proteins
PADAMMFB_01444 3.7e-142 plsC 2.3.1.51 I Acyltransferase
PADAMMFB_01445 6e-78 nodB3 G polysaccharide deacetylase
PADAMMFB_01446 7.3e-37 nodB3 G deacetylase
PADAMMFB_01447 2.3e-139 yabB 2.1.1.223 L Methyltransferase
PADAMMFB_01448 1e-41 yazA L endonuclease containing a URI domain
PADAMMFB_01449 1.2e-251 cshA 3.6.4.13 JKL DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
PADAMMFB_01450 2.3e-154 corA P CorA-like protein
PADAMMFB_01451 2.5e-62 yjqA S Bacterial PH domain
PADAMMFB_01452 2.3e-99 thiT S Thiamine transporter
PADAMMFB_01453 4.7e-157 Z012_04635 K Transcriptional activator, Rgg GadR MutR family
PADAMMFB_01454 1.9e-201 yjbB G Permeases of the major facilitator superfamily
PADAMMFB_01455 3.1e-300 prfC J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PADAMMFB_01456 1.4e-121 ywaF S Integral membrane protein (intg_mem_TP0381)
PADAMMFB_01457 3e-259 murF 6.3.2.10 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
PADAMMFB_01461 4.3e-155 cjaA ET ABC transporter substrate-binding protein
PADAMMFB_01462 1.4e-136 glnQ 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_01463 1.3e-114 P ABC transporter (Permease
PADAMMFB_01464 1e-114 papP P ABC transporter (Permease
PADAMMFB_01465 3.8e-193 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
PADAMMFB_01466 4.7e-31 copZ 2.7.7.77 P Heavy metal-associated domain protein
PADAMMFB_01467 0.0 copA 3.6.3.54 P P-type ATPase
PADAMMFB_01468 1.8e-72 copY K negative regulation of transcription, DNA-templated
PADAMMFB_01469 2.5e-141 trpA 4.2.1.20 E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
PADAMMFB_01470 8.4e-229 trpB 4.2.1.20, 5.3.1.24 E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
PADAMMFB_01471 3.3e-98 trpF 4.1.1.48, 4.2.1.160, 4.2.1.20, 5.3.1.24 E belongs to the TrpF family
PADAMMFB_01472 2.5e-133 trpC 4.1.1.48, 5.3.1.24 E Belongs to the TrpC family
PADAMMFB_01473 7.8e-180 trpD 2.4.2.18, 4.1.3.27 F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PADAMMFB_01474 1.2e-105 trpG 2.4.2.18, 2.6.1.85, 4.1.3.27 EH anthranilate
PADAMMFB_01475 2.8e-257 trpE 4.1.3.27 EH Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PADAMMFB_01476 3.7e-42 pchB 2.5.1.19, 4.2.1.10, 4.2.99.21, 5.4.99.5 E Chorismate mutase
PADAMMFB_01477 1.6e-55
PADAMMFB_01478 0.0 ctpE P E1-E2 ATPase
PADAMMFB_01479 6.1e-27
PADAMMFB_01480 1.2e-43 yaaK S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PADAMMFB_01481 9.7e-28 L transposase activity
PADAMMFB_01482 3.4e-68 K transcriptional regulator, MerR family
PADAMMFB_01483 1.3e-105 dnaQ 2.7.7.7 L DNA polymerase III
PADAMMFB_01484 1.2e-41 WQ51_02910 S Protein of unknown function, DUF536
PADAMMFB_01485 3.7e-63 XK27_02560 S cog cog2151
PADAMMFB_01486 0.0 ilvD 4.2.1.9 E Belongs to the IlvD Edd family
PADAMMFB_01487 7.7e-227 ytfP S Flavoprotein
PADAMMFB_01489 1.2e-120 trmB 2.1.1.297, 2.1.1.33 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
PADAMMFB_01490 1.2e-151 ytmP 2.7.1.89 M Phosphotransferase
PADAMMFB_01491 2.7e-183 ecsB U ABC transporter
PADAMMFB_01492 2.3e-133 ecsA V abc transporter atp-binding protein
PADAMMFB_01493 3.9e-72 hit FG Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
PADAMMFB_01494 5.6e-12
PADAMMFB_01495 2.6e-55 S CD20-like family
PADAMMFB_01496 7.3e-107
PADAMMFB_01498 0.0 clpL O ATP-dependent Clp protease ATP-binding subunit
PADAMMFB_01499 4.5e-205 ylbM S Belongs to the UPF0348 family
PADAMMFB_01500 4.5e-140 yqeM Q Methyltransferase domain protein
PADAMMFB_01501 6e-58 rsfS J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
PADAMMFB_01502 1.4e-107 nadD 2.7.6.3, 2.7.7.18 H HD superfamily hydrolase involved in NAD metabolism
PADAMMFB_01503 2.7e-117 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PADAMMFB_01504 3.5e-49 yhbY J RNA-binding protein
PADAMMFB_01505 1.4e-214 yqeH S in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
PADAMMFB_01506 1.8e-98 yqeG S hydrolase of the HAD superfamily
PADAMMFB_01507 7.4e-153 yicL EG COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
PADAMMFB_01508 5.8e-24
PADAMMFB_01509 5.1e-12
PADAMMFB_01510 7.8e-274 gatB 6.1.1.12, 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PADAMMFB_01511 3.5e-269 gatA 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
PADAMMFB_01512 1.4e-47 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PADAMMFB_01513 6.3e-31 M lipopolysaccharide 3-alpha-galactosyltransferase activity
PADAMMFB_01514 1e-148 ascB 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PADAMMFB_01515 5.1e-77 ascB 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PADAMMFB_01516 3.6e-96 msrA 1.8.4.11, 1.8.4.12 O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PADAMMFB_01517 1.8e-153 hlpA M Belongs to the NlpA lipoprotein family
PADAMMFB_01518 6.8e-101 pncA Q isochorismatase
PADAMMFB_01519 1.2e-140 codY K DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
PADAMMFB_01520 3.7e-240 alaA 2.6.1.2, 2.6.1.66 E Aminotransferase
PADAMMFB_01521 2.4e-75 XK27_03180 T universal stress protein
PADAMMFB_01524 6.3e-156 pflA 1.97.1.4 C Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PADAMMFB_01525 7.6e-239 hlyX S COG1253 Hemolysins and related proteins containing CBS domains
PADAMMFB_01526 2.4e-144 modF 3.6.3.21, 3.6.3.34 P abc transporter atp-binding protein
PADAMMFB_01527 0.0 yjcE P NhaP-type Na H and K H antiporters
PADAMMFB_01529 1.4e-98 ytqB 2.1.1.176 J (SAM)-dependent
PADAMMFB_01530 1.3e-184 yhcC S radical SAM protein
PADAMMFB_01531 2.2e-196 ylbL T Belongs to the peptidase S16 family
PADAMMFB_01532 2.7e-88 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PADAMMFB_01533 5.1e-93 rsmD 2.1.1.171 L Methyltransferase
PADAMMFB_01534 3.2e-172 trxB 1.8.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PADAMMFB_01535 1.9e-09 S Protein of unknown function (DUF4059)
PADAMMFB_01536 5e-131 tcyN 3.6.3.21 E abc transporter atp-binding protein
PADAMMFB_01537 1e-162 yxeN P ABC transporter (Permease
PADAMMFB_01538 5.7e-152 yxeM ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PADAMMFB_01540 3.1e-206 dinB 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PADAMMFB_01541 0.0 pflB 2.3.1.54 C formate acetyltransferase'
PADAMMFB_01542 1.8e-147 cah 4.2.1.1 P carbonic anhydrase
PADAMMFB_01543 2.1e-85 yjcF S COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PADAMMFB_01544 7.2e-46 hsdS_1 3.1.21.3 V type I restriction modification DNA specificity domain
PADAMMFB_01545 3.4e-32 D nuclear chromosome segregation
PADAMMFB_01546 4.4e-127 ybbM S transport system, permease component
PADAMMFB_01547 4.7e-85 ybbL S abc transporter atp-binding protein
PADAMMFB_01548 3.1e-31
PADAMMFB_01549 4.5e-185 ampC V COG1680 Beta-lactamase class C and other penicillin binding proteins
PADAMMFB_01550 7.8e-140 cppA E CppA N-terminal
PADAMMFB_01551 9.1e-30 V CAAX protease self-immunity
PADAMMFB_01552 2.3e-164 gla U Belongs to the MIP aquaporin (TC 1.A.8) family
PADAMMFB_01553 0.0 pepX 3.4.14.11 E Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
PADAMMFB_01556 3e-47 spiA K sequence-specific DNA binding
PADAMMFB_01557 9.5e-140 blpT
PADAMMFB_01561 2e-74 L Transposase
PADAMMFB_01566 4.3e-25 S Bacteriocin class II with double-glycine leader peptide
PADAMMFB_01569 8.9e-133 agrA KT phosphorelay signal transduction system
PADAMMFB_01570 3e-235 blpH 2.7.13.3 T protein histidine kinase activity
PADAMMFB_01572 7.3e-237 mesE M Transport protein ComB
PADAMMFB_01573 0.0 comA V ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PADAMMFB_01574 0.0 mdlB V abc transporter atp-binding protein
PADAMMFB_01575 0.0 mdlA V abc transporter atp-binding protein
PADAMMFB_01577 1.7e-93 XK27_09885 V Glycopeptide antibiotics resistance protein
PADAMMFB_01578 7.9e-224 rlmN 2.1.1.192 J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
PADAMMFB_01579 2.3e-72 yutD J protein conserved in bacteria
PADAMMFB_01580 4.8e-268 yunD 3.1.3.5 F Belongs to the 5'-nucleotidase family
PADAMMFB_01582 3.2e-221 cshB 3.6.4.13 JKL DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
PADAMMFB_01583 6.3e-185 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PADAMMFB_01584 0.0 ftsI 3.4.16.4 M penicillin-binding protein
PADAMMFB_01585 2.1e-46 ftsL D cell division protein FtsL
PADAMMFB_01586 3.9e-173 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
PADAMMFB_01587 1.4e-102
PADAMMFB_01588 2.6e-30
PADAMMFB_01590 7.4e-32 yhaI J Protein of unknown function (DUF805)
PADAMMFB_01591 4.5e-18 D nuclear chromosome segregation
PADAMMFB_01592 2.9e-224 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PADAMMFB_01593 5.7e-141 proB 2.7.2.11 E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PADAMMFB_01594 2.2e-285 XK27_00765
PADAMMFB_01595 8.1e-134 ecsA_2 V abc transporter atp-binding protein
PADAMMFB_01596 3.4e-124 S Protein of unknown function (DUF554)
PADAMMFB_01597 0.0 addA 3.6.4.12 L ATP-dependent helicase nuclease subunit A
PADAMMFB_01598 0.0 rexB 3.1.21.3, 3.6.4.12 L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
PADAMMFB_01599 2.6e-66 liaI S membrane
PADAMMFB_01600 6e-14 XK27_02470 K LytTr DNA-binding domain
PADAMMFB_01601 3.6e-66 KT response to antibiotic
PADAMMFB_01602 1.2e-80 yebC M Membrane
PADAMMFB_01603 1.1e-16 yebC M Membrane
PADAMMFB_01604 1.1e-259 XK27_03190 5.2.1.8 S hydrolases of the HAD superfamily
PADAMMFB_01605 1.5e-172 ansA 3.5.1.1 EJ COG0252 L-asparaginase archaeal Glu-tRNAGln amidotransferase subunit D
PADAMMFB_01606 0.0 recG 3.6.4.12 L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PADAMMFB_01607 6.8e-185 alr 5.1.1.1, 5.1.1.5 E Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PADAMMFB_01608 4.5e-61 acpS 2.7.6.3, 2.7.8.7, 5.1.1.1 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
PADAMMFB_01609 1.1e-197 aroF 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PADAMMFB_01610 3.8e-198 aroF 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PADAMMFB_01611 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PADAMMFB_01613 3.7e-187 manA 5.3.1.8 G mannose-6-phosphate isomerase
PADAMMFB_01614 4.1e-172 scrK 2.7.1.2, 2.7.1.4 GK Fructokinase
PADAMMFB_01615 0.0 scrA 2.7.1.208, 2.7.1.211 G pts system
PADAMMFB_01616 7.8e-290 scrB 3.2.1.26 GH32 G invertase
PADAMMFB_01617 2.9e-179 scrR K Transcriptional
PADAMMFB_01618 2.1e-73 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PADAMMFB_01619 3.4e-62 yqhY S protein conserved in bacteria
PADAMMFB_01620 1.2e-97 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PADAMMFB_01621 3.7e-84 comEB 3.5.4.12 F ComE operon protein 2
PADAMMFB_01622 1.5e-192 pepP 3.4.11.9, 3.4.13.9 E Belongs to the peptidase M24B family
PADAMMFB_01624 2.1e-18 V 'abc transporter, ATP-binding protein
PADAMMFB_01625 1.6e-19 V 'abc transporter, ATP-binding protein
PADAMMFB_01626 2.4e-60 V 'abc transporter, ATP-binding protein
PADAMMFB_01629 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PADAMMFB_01630 2e-169 corA P COG0598 Mg2 and Co2 transporters
PADAMMFB_01631 3.1e-124 XK27_01040 S Pfam PF06570
PADAMMFB_01633 9.7e-36 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PADAMMFB_01634 2.7e-91 ssb L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PADAMMFB_01635 3.9e-47 rpsF J Binds together with S18 to 16S ribosomal RNA
PADAMMFB_01636 1.3e-37 XK27_05745
PADAMMFB_01637 4.2e-230 mutY L A G-specific adenine glycosylase
PADAMMFB_01642 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PADAMMFB_01643 0.0 mutS2 L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PADAMMFB_01644 1e-93 cvpA S toxin biosynthetic process
PADAMMFB_01645 2.3e-13 zapA D Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
PADAMMFB_01646 4.7e-160 rnhC 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PADAMMFB_01647 1.3e-113 lepB 3.4.21.89 U Belongs to the peptidase S26 family
PADAMMFB_01648 0.0 recD2 3.1.11.5 L DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
PADAMMFB_01649 2e-47 azlD E branched-chain amino acid
PADAMMFB_01650 1.8e-114 azlC E AzlC protein
PADAMMFB_01651 1.1e-186 tsaD 2.3.1.234 O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PADAMMFB_01652 1.3e-73 rimI 2.3.1.128 K This enzyme acetylates the N-terminal alanine of ribosomal protein S18
PADAMMFB_01653 4.3e-121 yeaZ 2.3.1.234 O COG1214, inactive homolog of metal-dependent proteases
PADAMMFB_01654 2.5e-33 ykzG S Belongs to the UPF0356 family
PADAMMFB_01655 0.0 rnjA S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PADAMMFB_01656 3.2e-41 pscB M CHAP domain protein
PADAMMFB_01657 1.5e-263 glnA 6.3.1.2 E glutamine synthetase
PADAMMFB_01658 8.5e-63 glnR K Transcriptional regulator
PADAMMFB_01659 2.3e-87 S Fusaric acid resistance protein-like
PADAMMFB_01660 2e-222 pgk 2.7.2.3, 5.3.1.1 F Belongs to the phosphoglycerate kinase family
PADAMMFB_01661 1.7e-35 L transposase activity
PADAMMFB_01662 4.6e-188 gap 1.2.1.12 G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
PADAMMFB_01663 0.0 fusA J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PADAMMFB_01664 6.7e-81 rpsG J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
PADAMMFB_01665 2.3e-69 rpsL J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PADAMMFB_01666 2.4e-142 purR 2.4.2.7 F operon repressor
PADAMMFB_01667 3.6e-179 cbf S 3'-5' exoribonuclease yhaM
PADAMMFB_01668 6.9e-173 rmuC S RmuC domain protein
PADAMMFB_01669 3.1e-118 thiN 2.7.6.2 H thiamine pyrophosphokinase
PADAMMFB_01670 3e-119 rpe 5.1.3.1 G Belongs to the ribulose-phosphate 3-epimerase family
PADAMMFB_01671 2.9e-162 rsgA 3.1.3.100 G One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
PADAMMFB_01673 8.9e-156 ksgA 2.1.1.182 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
PADAMMFB_01674 8.4e-99 rnmV 3.1.26.8 J Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PADAMMFB_01675 4.1e-144 tatD L Hydrolase, tatd
PADAMMFB_01676 1.5e-74 yccU S CoA-binding protein
PADAMMFB_01677 1.4e-50 trxA O Belongs to the thioredoxin family
PADAMMFB_01678 6.6e-142 S Macro domain protein
PADAMMFB_01679 6.3e-11 L thioesterase
PADAMMFB_01680 6.5e-54 bta 1.8.1.8 CO cell redox homeostasis
PADAMMFB_01683 1.7e-226 tgt 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
PADAMMFB_01684 1e-33 L Transposase
PADAMMFB_01685 1e-13 rpmH J Ribosomal protein L34
PADAMMFB_01686 2e-186 jag S RNA-binding protein
PADAMMFB_01687 5.4e-139 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PADAMMFB_01688 5.9e-55 rnpA 3.1.26.5 J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
PADAMMFB_01689 4.1e-264 argH 4.3.2.1 E Argininosuccinate lyase
PADAMMFB_01690 4.4e-230 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
PADAMMFB_01691 2.1e-282 gltX 6.1.1.17, 6.1.1.24 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PADAMMFB_01692 6.7e-81 amiA E transmembrane transport
PADAMMFB_01693 7.3e-69 amiA E transmembrane transport
PADAMMFB_01694 4.8e-120 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
PADAMMFB_01695 3.7e-70 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PADAMMFB_01696 9.2e-51 S Protein of unknown function (DUF3397)
PADAMMFB_01697 7.8e-88 cah 4.2.1.1 P Reversible hydration of carbon dioxide
PADAMMFB_01698 7.3e-59 WQ51_05710 S Mitochondrial biogenesis AIM24
PADAMMFB_01699 6.2e-12 WQ51_05710 S Mitochondrial biogenesis AIM24
PADAMMFB_01700 1.4e-226 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PADAMMFB_01701 1.1e-80 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
PADAMMFB_01702 1.8e-19 XK27_09620 S FMN reductase (NADPH) activity
PADAMMFB_01703 9.5e-77 XK27_09620 S reductase
PADAMMFB_01704 2.1e-32 XK27_09615 S FMN reductase (NADPH) activity
PADAMMFB_01705 1.2e-131 XK27_09615 S PAS domain
PADAMMFB_01707 3.2e-62 fnt P Formate nitrite transporter
PADAMMFB_01708 5.6e-82 XK27_08585 S Psort location CytoplasmicMembrane, score
PADAMMFB_01709 1.7e-185 gpsA 1.1.1.94 I Glycerol-3-phosphate dehydrogenase
PADAMMFB_01710 1.6e-168 galU 2.7.7.9 M UTP-glucose-1-phosphate uridylyltransferase
PADAMMFB_01711 2.2e-117 gluP 3.4.21.105 O membrane protein (homolog of Drosophila rhomboid)
PADAMMFB_01712 3.5e-94 ygfA 6.3.3.2 H Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PADAMMFB_01713 3e-220 hipO 3.5.1.47 E Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
PADAMMFB_01714 8.1e-59 dapD 2.3.1.117, 2.3.1.89 E Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
PADAMMFB_01715 6e-48 S glycolate biosynthetic process
PADAMMFB_01716 4e-65 S phosphatase activity
PADAMMFB_01717 2e-157 rrmA 2.1.1.187 Q methyltransferase
PADAMMFB_01720 2.7e-91 tadA 3.5.4.1, 3.5.4.33 FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
PADAMMFB_01721 5.1e-66 ssb_2 L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PADAMMFB_01722 4.1e-36 yeeD O sulfur carrier activity
PADAMMFB_01723 1.9e-189 yeeE S Sulphur transport
PADAMMFB_01724 7.9e-114 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PADAMMFB_01725 4.2e-55 ytpP 2.7.1.180, 5.3.4.1 CO Thioredoxin
PADAMMFB_01726 3.2e-09 S Domain of unknown function (DUF4651)
PADAMMFB_01727 2e-205 pepA 3.4.11.7 G COG1363 Cellulase M and related proteins
PADAMMFB_01728 1.5e-130 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PADAMMFB_01729 8.7e-111 S CAAX amino terminal protease family protein
PADAMMFB_01731 5e-67 V CAAX protease self-immunity
PADAMMFB_01732 2.6e-26 lanR K sequence-specific DNA binding
PADAMMFB_01733 8.3e-221 ackA 2.7.2.1 F Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PADAMMFB_01734 2.9e-176 ytxK 2.1.1.72 L DNA methylase
PADAMMFB_01735 5.2e-13 comGF U Putative Competence protein ComGF
PADAMMFB_01736 1.3e-70 comGF U Competence protein ComGF
PADAMMFB_01737 3.2e-15 NU Type II secretory pathway pseudopilin
PADAMMFB_01738 3e-57 cglD NU Competence protein
PADAMMFB_01739 8.5e-43 comGC U Required for transformation and DNA binding
PADAMMFB_01740 5.4e-153 cglB U protein transport across the cell outer membrane
PADAMMFB_01741 1.1e-175 comGA NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PADAMMFB_01742 8.5e-68 S cog cog4699
PADAMMFB_01743 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PADAMMFB_01744 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PADAMMFB_01745 0.0 pbp1B 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PADAMMFB_01746 1.6e-238 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PADAMMFB_01747 1.6e-196 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PADAMMFB_01748 7.7e-77 ilvN 2.2.1.6 E Acetolactate synthase
PADAMMFB_01749 0.0 ilvB 2.2.1.6 EH Acetolactate synthase
PADAMMFB_01750 4.4e-280 ilvD 4.2.1.9 E Belongs to the IlvD Edd family
PADAMMFB_01751 8.4e-09 ilvD 4.2.1.9 E Belongs to the IlvD Edd family
PADAMMFB_01752 6.4e-304 yloV S kinase related to dihydroxyacetone kinase
PADAMMFB_01753 1.4e-57 asp S cog cog1302
PADAMMFB_01754 9.3e-226 norN V Mate efflux family protein
PADAMMFB_01755 6.4e-279 thrC 4.2.3.1 E Threonine synthase
PADAMMFB_01756 3.2e-65 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
PADAMMFB_01757 1.2e-35 adhE 1.1.1.1, 1.2.1.10 C hydroxyacid-oxoacid transhydrogenase activity
PADAMMFB_01758 3.5e-76 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
PADAMMFB_01759 1.3e-135 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
PADAMMFB_01760 7.4e-65 adhE 1.1.1.1, 1.2.1.10 C Dehydrogenase
PADAMMFB_01761 0.0 pepO 3.4.24.71 O Peptidase family M13
PADAMMFB_01762 1.8e-37 treC 3.2.1.93 GH13 G COG0366 Glycosidases
PADAMMFB_01763 1.2e-69 treC 3.2.1.93 GH13 G COG0366 Glycosidases
PADAMMFB_01764 5.9e-66 treC 3.2.1.93 GH13 G COG0366 Glycosidases
PADAMMFB_01765 1.1e-11 treC 3.2.1.93 GH13 G COG0366 Glycosidases
PADAMMFB_01766 1.4e-54 treB 2.7.1.201 G PTS System
PADAMMFB_01767 5.8e-21 treR K DNA-binding transcription factor activity
PADAMMFB_01768 1.2e-85 treR K trehalose operon
PADAMMFB_01769 3.3e-95 ywlG S Belongs to the UPF0340 family
PADAMMFB_01773 1e-46 K Helix-turn-helix XRE-family like proteins
PADAMMFB_01774 8.6e-42
PADAMMFB_01775 6.6e-73
PADAMMFB_01776 2.4e-274 ydcQ D Ftsk spoiiie family protein
PADAMMFB_01777 4.6e-222 K Replication initiation factor
PADAMMFB_01778 4.3e-33
PADAMMFB_01779 3.5e-89
PADAMMFB_01780 4e-160 S Conjugative transposon protein TcpC
PADAMMFB_01781 1.2e-32
PADAMMFB_01782 1.9e-68 S TcpE family
PADAMMFB_01783 0.0 yddE S AAA-like domain
PADAMMFB_01784 2.1e-266
PADAMMFB_01785 4.4e-30
PADAMMFB_01786 2.5e-166 isp2 S pathogenesis
PADAMMFB_01787 4e-16
PADAMMFB_01788 1.6e-199 L DNA integration
PADAMMFB_01789 9e-164 fba 4.1.2.13, 4.1.2.29 G aldolase
PADAMMFB_01791 3e-110 6.3.2.2 H ergothioneine biosynthetic process
PADAMMFB_01792 2.7e-19 6.3.2.2 H gamma-glutamylcysteine synthetase
PADAMMFB_01793 2.5e-12 6.3.2.2 H gamma-glutamylcysteine synthetase
PADAMMFB_01794 3.3e-09 L PFAM Integrase, catalytic core
PADAMMFB_01795 1.8e-111 L PFAM Integrase, catalytic core
PADAMMFB_01796 3.3e-62 rplQ J ribosomal protein l17
PADAMMFB_01797 4e-170 rpoA 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PADAMMFB_01798 9.6e-62 rpsK J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PADAMMFB_01799 4e-57 rpsM J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PADAMMFB_01800 6e-15 rpmJ J Belongs to the bacterial ribosomal protein bL36 family
PADAMMFB_01801 2.7e-32 infA J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PADAMMFB_01802 9.2e-121 adk 2.7.4.3 F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
PADAMMFB_01803 1.5e-231 secY U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
PADAMMFB_01804 1.7e-57 rplO J binds to the 23S rRNA
PADAMMFB_01805 2.5e-23 rpmD J ribosomal protein l30
PADAMMFB_01806 1.7e-79 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PADAMMFB_01807 1.9e-56 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PADAMMFB_01808 2.3e-93 rplF J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PADAMMFB_01809 1.2e-67 rpsH J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PADAMMFB_01810 1.5e-28 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PADAMMFB_01811 1.6e-94 rplE J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PADAMMFB_01812 1.4e-47 rplX J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PADAMMFB_01813 1.1e-59 rplN J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PADAMMFB_01814 6e-39 rpsQ J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PADAMMFB_01815 2.7e-26 rpmC J Belongs to the universal ribosomal protein uL29 family
PADAMMFB_01816 7.2e-71 rplP J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PADAMMFB_01817 2.1e-117 rpsC J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PADAMMFB_01818 7.3e-53 rplV J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PADAMMFB_01819 4.9e-47 rpsS J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PADAMMFB_01820 8.8e-153 rplB J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PADAMMFB_01821 2.4e-44 rplW J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
PADAMMFB_01822 5.7e-104 rplD J Forms part of the polypeptide exit tunnel
PADAMMFB_01823 1.1e-110 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PADAMMFB_01824 1.3e-48 rpsJ J Involved in the binding of tRNA to the ribosomes
PADAMMFB_01825 7.8e-188 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
PADAMMFB_01826 0.0 XK27_09800 I Acyltransferase
PADAMMFB_01827 1.7e-35 XK27_09805 S MORN repeat protein
PADAMMFB_01828 1e-80 ptpA 3.1.3.48 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PADAMMFB_01829 7.1e-250 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PADAMMFB_01830 5.9e-91 adk 2.7.4.3 F topology modulation protein
PADAMMFB_01831 2.7e-12 Z012_04635 K Transcriptional activator, Rgg GadR MutR family
PADAMMFB_01832 1.4e-127 Z012_04635 K sequence-specific DNA binding
PADAMMFB_01834 6.3e-16 C Radical SAM
PADAMMFB_01835 3.4e-191 C Radical SAM
PADAMMFB_01836 3.9e-287 V ABC transporter transmembrane region
PADAMMFB_01837 2.5e-89 K sequence-specific DNA binding
PADAMMFB_01838 1.3e-36 L Replication initiation factor
PADAMMFB_01839 1.4e-107 L Replication initiation factor
PADAMMFB_01840 1.9e-18 S Domain of unknown function (DUF3173)
PADAMMFB_01841 8.5e-215 int L Belongs to the 'phage' integrase family
PADAMMFB_01843 5.2e-237 rarA L ATPase related to the helicase subunit of the Holliday junction resolvase
PADAMMFB_01844 8.4e-27 rpmB J Belongs to the bacterial ribosomal protein bL28 family
PADAMMFB_01845 2.8e-44 yrzL S Belongs to the UPF0297 family
PADAMMFB_01846 1.2e-70 yqgF L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PADAMMFB_01847 4.2e-44 yrzB S Belongs to the UPF0473 family
PADAMMFB_01848 7.3e-300 ccs S the current gene model (or a revised gene model) may contain a frame shift
PADAMMFB_01849 0.0 nrdD 1.1.98.6 F Ribonucleoside-triphosphate reductase
PADAMMFB_01850 7.5e-14
PADAMMFB_01851 2.6e-91 XK27_10930 K acetyltransferase
PADAMMFB_01852 3.7e-116 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PADAMMFB_01853 1.8e-147 yaaA S Belongs to the UPF0246 family
PADAMMFB_01854 9.3e-167 XK27_01785 S cog cog1284
PADAMMFB_01855 0.0 aspS 6.1.1.12 J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
PADAMMFB_01857 1.6e-241 hisS 6.1.1.21 J histidyl-tRNA synthetase
PADAMMFB_01858 1.4e-53 metE 2.1.1.14 E Methionine synthase
PADAMMFB_01859 5.2e-55 metE 2.1.1.14 E Methionine synthase
PADAMMFB_01860 1.4e-36 metE 2.1.1.14 E Methionine synthase
PADAMMFB_01861 1e-24 rpmF J Belongs to the bacterial ribosomal protein bL32 family
PADAMMFB_01862 6.7e-19 rpmG J Belongs to the bacterial ribosomal protein bL33 family
PADAMMFB_01865 2.6e-49 yegS 2.7.1.107 I lipid kinase activity
PADAMMFB_01866 9.4e-96 S Hydrophobic domain protein
PADAMMFB_01868 3.7e-27 S Membrane
PADAMMFB_01869 3.1e-101
PADAMMFB_01870 1.8e-23 S Small integral membrane protein
PADAMMFB_01871 2.1e-64 M Protein conserved in bacteria
PADAMMFB_01873 3.4e-18 XK27_06920 S Protein of unknown function (DUF1700)
PADAMMFB_01874 2.4e-108 S Putative adhesin
PADAMMFB_01875 1.6e-159 XK27_06930 V domain protein
PADAMMFB_01876 6.4e-96 XK27_06935 K transcriptional regulator
PADAMMFB_01877 4.8e-55 ypaA M Membrane
PADAMMFB_01878 1.8e-08
PADAMMFB_01882 6.5e-266
PADAMMFB_01883 3.8e-13
PADAMMFB_01884 6.7e-17
PADAMMFB_01885 3.4e-12 K Helix-turn-helix
PADAMMFB_01886 1.4e-12 K sequence-specific DNA binding
PADAMMFB_01887 2.7e-139 sip L Phage integrase, N-terminal SAM-like domain
PADAMMFB_01888 2.9e-108 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PADAMMFB_01889 8.2e-48 veg S Biofilm formation stimulator VEG
PADAMMFB_01890 1.5e-245 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
PADAMMFB_01891 8.5e-73 rplI J binds to the 23S rRNA
PADAMMFB_01892 0.0 yybT T signaling protein consisting of a modified GGDEF domain and a DHH domain
PADAMMFB_01893 0.0 gidA D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
PADAMMFB_01894 1.5e-77 F NUDIX domain
PADAMMFB_01895 8.6e-220 mnmA 2.8.1.13 J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
PADAMMFB_01896 0.0 S Bacterial membrane protein, YfhO
PADAMMFB_01897 1.5e-88 isaA GH23 M Immunodominant staphylococcal antigen A
PADAMMFB_01898 5.3e-85 lytE M LysM domain protein
PADAMMFB_01899 2e-138 ecfT P Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PADAMMFB_01900 5.2e-153 ecfA2 3.6.3.55 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PADAMMFB_01901 1.5e-152 ecfA1 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PADAMMFB_01902 6.9e-90 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PADAMMFB_01903 3.7e-138 ymfM S sequence-specific DNA binding
PADAMMFB_01904 1.4e-242 ymfH S Peptidase M16
PADAMMFB_01905 6.9e-234 ymfF S Peptidase M16
PADAMMFB_01906 1.6e-45 yaaA S S4 domain protein YaaA
PADAMMFB_01907 1.7e-204 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PADAMMFB_01908 1.5e-275 guaB 1.1.1.205 F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
PADAMMFB_01909 8.2e-193 trpS 6.1.1.2 J Tryptophanyl-tRNA synthetase
PADAMMFB_01910 5.4e-153 yvjA S membrane
PADAMMFB_01911 2e-42 ybiT S abc transporter atp-binding protein
PADAMMFB_01912 1e-254 ybiT S abc transporter atp-binding protein
PADAMMFB_01913 0.0 XK27_10405 S Bacterial membrane protein YfhO
PADAMMFB_01917 6.2e-120 yoaK S Psort location CytoplasmicMembrane, score
PADAMMFB_01918 1.1e-86 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PADAMMFB_01919 5.8e-193 htrA 3.4.21.107 O Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain'
PADAMMFB_01920 8.5e-134 parB K Belongs to the ParB family
PADAMMFB_01921 8.1e-50 M the current gene model (or a revised gene model) may contain a
PADAMMFB_01922 1.3e-125 tnp L DDE domain
PADAMMFB_01923 5.9e-17 lytN 3.5.1.104 M LysM domain
PADAMMFB_01924 7.2e-159 L Transposase DDE domain
PADAMMFB_01925 4.3e-41 L Protein of unknown function (DUF3991)
PADAMMFB_01927 1.9e-16 yjgN S membrane
PADAMMFB_01928 2.8e-27 S Transcriptional regulator, RinA family
PADAMMFB_01932 3e-92 S MucBP domain
PADAMMFB_01933 5.9e-51 M YSIRK type signal peptide
PADAMMFB_01934 3.3e-80 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_01935 2e-43 amiA E ABC transporter, substrate-binding protein, family 5
PADAMMFB_01936 1.6e-112 csn2 S CRISPR-associated protein (Cas_Csn2)
PADAMMFB_01937 2.6e-55 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_01938 4.4e-163 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PADAMMFB_01939 0.0 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
PADAMMFB_01940 5.3e-67 cps4C M Chain length determinant protein
PADAMMFB_01941 7.3e-34 cpsD D Cellulose biosynthesis protein BcsQ
PADAMMFB_01942 6.8e-21 cpsB 3.1.3.48 GM Capsular polysaccharide biosynthesis protein
PADAMMFB_01943 8e-91 cpsB 3.1.3.48 GM Capsular polysaccharide biosynthesis protein
PADAMMFB_01944 5.9e-250 pglF 4.2.1.115, 4.2.1.135, 4.2.1.46 GM CoA-binding domain
PADAMMFB_01945 4.6e-16 S Fic/DOC family
PADAMMFB_01946 1.2e-198 2.6.1.102 E Belongs to the DegT DnrJ EryC1 family
PADAMMFB_01947 3.3e-35 epsL M Bacterial sugar transferase
PADAMMFB_01948 6.8e-114 epsN 2.6.1.102 E Belongs to the DegT DnrJ EryC1 family
PADAMMFB_01949 1.6e-100 epsL 2.7.8.6 M sugar transferase
PADAMMFB_01950 1.4e-67 tuaG GT2 M Glycosyltransferase like family 2
PADAMMFB_01951 1.3e-199 ugd 1.1.1.22 M UDP binding domain
PADAMMFB_01952 6.1e-116 rfbF 2.7.7.33 M MobA-like NTP transferase domain
PADAMMFB_01953 6.5e-153 rfbG 4.2.1.45 M CDP-glucose 4,6-dehydratase
PADAMMFB_01954 1.2e-62 5.1.3.2 GT2 GM NAD dependent epimerase/dehydratase family
PADAMMFB_01955 2.5e-66 rfbC 5.1.3.13 M dTDP-4-dehydrorhamnose 3,5-epimerase
PADAMMFB_01956 4.4e-61 Z012_04635 K Transcriptional activator, Rgg GadR MutR family
PADAMMFB_01958 5.5e-258 I radical SAM domain protein
PADAMMFB_01959 4.9e-27 L Transposase and inactivated derivatives, TnpA family
PADAMMFB_01960 9.8e-176 gadC E Psort location CytoplasmicMembrane, score 10.00
PADAMMFB_01961 2.3e-214 gadB 4.1.1.15 E Belongs to the group II decarboxylase family
PADAMMFB_01962 5.2e-124 E IrrE N-terminal-like domain
PADAMMFB_01963 4.7e-107 K Peptidase S24-like protein
PADAMMFB_01964 2e-22
PADAMMFB_01965 2.8e-104 rfbA 2.7.7.24 M Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PADAMMFB_01966 1.9e-48
PADAMMFB_01967 1.1e-20 S Glycosyl transferase family 2
PADAMMFB_01968 2.7e-166 M the current gene model (or a revised gene model) may contain a
PADAMMFB_01969 1.6e-07 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PADAMMFB_01970 3.4e-154 S polysaccharide biosynthetic process

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)