ORF_ID e_value Gene_name EC_number CAZy COGs Description
COODHJFA_00001 0.0 4.2.1.53 S MCRA family
COODHJFA_00002 1.8e-167 dkgA 1.1.1.346 C Aldo/keto reductase family
COODHJFA_00003 3e-34 yneG S Domain of unknown function (DUF4186)
COODHJFA_00004 0.0 dnaE 2.7.7.7 L DNA polymerase III alpha subunit
COODHJFA_00005 1.7e-201 K WYL domain
COODHJFA_00006 9e-178 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
COODHJFA_00007 5.4e-90 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
COODHJFA_00008 5.2e-22 tccB2 V DivIVA protein
COODHJFA_00009 4.9e-45 yggT S YGGT family
COODHJFA_00010 5.9e-69 sepF D Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
COODHJFA_00011 4.6e-211 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
COODHJFA_00012 2.8e-248 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
COODHJFA_00013 5.7e-296 glyQS 6.1.1.14 J Catalyzes the attachment of glycine to tRNA(Gly)
COODHJFA_00014 1.1e-154 thiM 2.7.1.50 H Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
COODHJFA_00015 0.0 thiC 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
COODHJFA_00016 1.8e-231 O AAA domain (Cdc48 subfamily)
COODHJFA_00017 8.7e-145 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
COODHJFA_00018 5.6e-62 S Thiamine-binding protein
COODHJFA_00019 7.1e-248 ydjK G Sugar (and other) transporter
COODHJFA_00020 1.8e-214 2.7.13.3 T Histidine kinase
COODHJFA_00021 6.1e-123 K helix_turn_helix, Lux Regulon
COODHJFA_00022 4.5e-191
COODHJFA_00023 1.3e-257 O SERine Proteinase INhibitors
COODHJFA_00024 4e-195 K helix_turn _helix lactose operon repressor
COODHJFA_00025 6.2e-241 lacY P LacY proton/sugar symporter
COODHJFA_00026 3e-303 cscA 3.2.1.26 GH32 G Belongs to the glycosyl hydrolase 32 family
COODHJFA_00027 3.2e-141 ppgK 2.7.1.2, 2.7.1.63 GK ROK family
COODHJFA_00028 2.5e-149 C Putative TM nitroreductase
COODHJFA_00029 6.4e-198 S Glycosyltransferase, group 2 family protein
COODHJFA_00030 1.3e-93 ribU U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
COODHJFA_00031 0.0 ecfA GP ABC transporter, ATP-binding protein
COODHJFA_00032 3.1e-47 yhbY J CRS1_YhbY
COODHJFA_00033 1.4e-54 yvlD S Mycobacterial 4 TMS phage holin, superfamily IV
COODHJFA_00034 2.4e-52
COODHJFA_00035 3.8e-187 ghrA EH D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
COODHJFA_00036 6.5e-252 EGP Major facilitator Superfamily
COODHJFA_00037 2.3e-33 mtrB 2.7.13.3 T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
COODHJFA_00038 6.9e-11 KT Transcriptional regulatory protein, C terminal
COODHJFA_00039 3.4e-250 rarA L Recombination factor protein RarA
COODHJFA_00040 0.0 helY L DEAD DEAH box helicase
COODHJFA_00041 8.1e-199 2.7.4.1 S Polyphosphate kinase 2 (PPK2)
COODHJFA_00043 6.3e-287 ydfD EK Alanine-glyoxylate amino-transferase
COODHJFA_00044 1.3e-111 argO S LysE type translocator
COODHJFA_00045 1.1e-289 phoN I PAP2 superfamily
COODHJFA_00046 1e-193 gluD E Binding-protein-dependent transport system inner membrane component
COODHJFA_00047 1.2e-110 gluC E Binding-protein-dependent transport system inner membrane component
COODHJFA_00048 5.3e-147 gluB ET Belongs to the bacterial solute-binding protein 3 family
COODHJFA_00049 3.1e-153 gluA 3.6.3.21 E ATP-binding protein of ABC transporter for glutamate K02028
COODHJFA_00050 6.1e-102 S Aminoacyl-tRNA editing domain
COODHJFA_00051 0.0 aspS 6.1.1.12 J Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
COODHJFA_00052 5.9e-261 hisS 6.1.1.21 J Histidyl-tRNA synthetase
COODHJFA_00053 2e-224 3.1.26.12, 3.2.1.8 S Domain of Unknown Function (DUF349)
COODHJFA_00054 0.0 3.1.3.5 F 5'-nucleotidase, C-terminal domain
COODHJFA_00055 6.4e-142 3.5.2.10 S Creatinine amidohydrolase
COODHJFA_00056 1.2e-247 proP EGP Sugar (and other) transporter
COODHJFA_00058 4.9e-279 purR QT Purine catabolism regulatory protein-like family
COODHJFA_00059 1.8e-256 codA 3.5.4.1, 3.5.4.21 F Amidohydrolase family
COODHJFA_00060 0.0 clpC O ATPase family associated with various cellular activities (AAA)
COODHJFA_00061 5.9e-135 uspA T Belongs to the universal stress protein A family
COODHJFA_00062 8.2e-31 uspA T Belongs to the universal stress protein A family
COODHJFA_00063 3.7e-180 S Protein of unknown function (DUF3027)
COODHJFA_00064 1.7e-66 cspB K 'Cold-shock' DNA-binding domain
COODHJFA_00065 0.0 2.7.13.3 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
COODHJFA_00066 2e-132 KT Response regulator receiver domain protein
COODHJFA_00067 4.3e-99
COODHJFA_00068 4.2e-33 S Proteins of 100 residues with WXG
COODHJFA_00069 2.7e-291 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
COODHJFA_00070 6.1e-38 K 'Cold-shock' DNA-binding domain
COODHJFA_00071 8.1e-85 S LytR cell envelope-related transcriptional attenuator
COODHJFA_00072 2.4e-132 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
COODHJFA_00073 1.1e-187 moxR S ATPase family associated with various cellular activities (AAA)
COODHJFA_00074 1.3e-163 S Protein of unknown function DUF58
COODHJFA_00075 1.1e-84
COODHJFA_00076 3.3e-189 S von Willebrand factor (vWF) type A domain
COODHJFA_00077 1e-153 S von Willebrand factor (vWF) type A domain
COODHJFA_00078 3.4e-55
COODHJFA_00079 1.2e-254 S PGAP1-like protein
COODHJFA_00080 1.3e-111 ykoE S ABC-type cobalt transport system, permease component
COODHJFA_00081 3.3e-280 purB 4.3.2.2 F Adenylosuccinate lyase C-terminal
COODHJFA_00082 0.0 S Lysylphosphatidylglycerol synthase TM region
COODHJFA_00083 8.1e-42 hup L Belongs to the bacterial histone-like protein family
COODHJFA_00084 5.4e-286 pafA 6.3.1.19 O Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
COODHJFA_00086 8.9e-175 hisN 3.1.3.25 G Inositol monophosphatase family
COODHJFA_00087 0.0 dop 3.5.1.119, 6.3.1.19 S Pup-ligase protein
COODHJFA_00088 2.1e-134 alsE 5.1.3.1 G Ribulose-phosphate 3 epimerase family
COODHJFA_00089 9.1e-161 G Phosphotransferase System
COODHJFA_00090 2.1e-46 fruA 2.7.1.202 G PTS system, Lactose/Cellobiose specific IIB subunit
COODHJFA_00091 1.1e-78 2.7.1.194, 2.7.1.202 G Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
COODHJFA_00092 3e-72 H Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
COODHJFA_00093 2.9e-279 manR K PRD domain
COODHJFA_00094 3.2e-135 3.8.1.2 S Haloacid dehalogenase-like hydrolase
COODHJFA_00095 7e-284 arc O AAA ATPase forming ring-shaped complexes
COODHJFA_00096 2.2e-125 apl 3.1.3.1 S SNARE associated Golgi protein
COODHJFA_00097 6.6e-120 serB 3.1.3.3 E haloacid dehalogenase-like hydrolase
COODHJFA_00098 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
COODHJFA_00099 2.3e-133 3.8.1.2 S Haloacid dehalogenase-like hydrolase
COODHJFA_00100 4.2e-189 fmt 2.1.1.176, 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
COODHJFA_00101 0.0 ilvD 4.2.1.9 H Belongs to the IlvD Edd family
COODHJFA_00102 4.2e-46 rpoZ 2.7.7.6 K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
COODHJFA_00103 5.5e-228 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
COODHJFA_00104 1.2e-31 hsdS 3.1.21.3 L Type I restriction modification DNA specificity domain
COODHJFA_00105 8.4e-107 L Belongs to the 'phage' integrase family
COODHJFA_00106 1.5e-78 hsdS 3.1.21.3 V COG0732 Restriction endonuclease S subunits
COODHJFA_00107 1.1e-44 hsdS 3.1.21.3 V Type I restriction modification DNA specificity domain
COODHJFA_00108 8.8e-244 hsdM 2.1.1.72 V HsdM N-terminal domain
COODHJFA_00109 0.0 hsdR 3.1.21.3 L Subunit R is required for both nuclease and ATPase activities, but not for modification
COODHJFA_00111 1.4e-158 I type I phosphodiesterase nucleotide pyrophosphatase
COODHJFA_00112 1.1e-201 3.6.3.30 E Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
COODHJFA_00113 2.2e-160 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00114 4.4e-150 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00115 1.3e-199 P Bacterial extracellular solute-binding protein
COODHJFA_00116 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
COODHJFA_00117 1.3e-152 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
COODHJFA_00118 2.3e-161 dcuD C C4-dicarboxylate anaerobic carrier
COODHJFA_00119 2.6e-105 rihB 3.2.2.1 F Inosine-uridine preferring nucleoside hydrolase
COODHJFA_00120 2.4e-43 K acetyltransferase
COODHJFA_00121 7.9e-127 rbsR K helix_turn _helix lactose operon repressor
COODHJFA_00122 0.0 V ABC transporter transmembrane region
COODHJFA_00123 0.0 V ABC transporter, ATP-binding protein
COODHJFA_00124 5.2e-90 K MarR family
COODHJFA_00125 0.0 bglB 3.2.1.21 GH3 G Glycosyl hydrolase family 3 N-terminal domain protein
COODHJFA_00126 1.5e-85 K Bacterial regulatory proteins, tetR family
COODHJFA_00127 4.9e-211 3.2.1.58 G Belongs to the glycosyl hydrolase 5 (cellulase A) family
COODHJFA_00128 2.6e-70 S Nucleotidyltransferase substrate binding protein like
COODHJFA_00129 1.2e-45 S Nucleotidyltransferase domain
COODHJFA_00131 0.0 bgl2 3.2.1.21 GH3 G Fibronectin type III-like domain
COODHJFA_00132 2.1e-142 K Bacterial regulatory proteins, tetR family
COODHJFA_00133 5.5e-255 gshA 6.3.2.2 H Glutamate-cysteine ligase family 2(GCS2)
COODHJFA_00134 0.0 hgdC I CoA enzyme activase uncharacterised domain (DUF2229)
COODHJFA_00135 6.5e-136 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
COODHJFA_00136 0.0 nrdD 1.1.98.6 F Anaerobic ribonucleoside-triphosphate reductase
COODHJFA_00137 6.3e-257 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
COODHJFA_00138 2.4e-41 xseB 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
COODHJFA_00139 1.5e-90 ywrO 1.6.5.2 S Flavodoxin-like fold
COODHJFA_00140 0.0 fadD 6.2.1.3 I AMP-binding enzyme
COODHJFA_00141 3.2e-65 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
COODHJFA_00142 3.7e-78 F Nucleoside 2-deoxyribosyltransferase
COODHJFA_00144 1.6e-192 S Endonuclease/Exonuclease/phosphatase family
COODHJFA_00145 2.9e-179 ppx 3.6.1.11, 3.6.1.40 FP Ppx/GppA phosphatase family
COODHJFA_00146 3e-234 aspB E Aminotransferase class-V
COODHJFA_00147 2.2e-201 afr_2 S Oxidoreductase family, NAD-binding Rossmann fold
COODHJFA_00148 2.2e-87 vsr L May nick specific sequences that contain T G mispairs resulting from m5C-deamination
COODHJFA_00149 1.2e-100 XK27_03610 K Acetyltransferase (GNAT) domain
COODHJFA_00150 0.0 snf 2.7.11.1 KL Psort location Cytoplasmic, score 8.87
COODHJFA_00151 4e-147 dapD 2.3.1.117 E Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA
COODHJFA_00152 9.2e-250 gltA 2.3.3.1 C Citrate synthase, C-terminal domain
COODHJFA_00153 6e-151 map 3.4.11.18 E Methionine aminopeptidase
COODHJFA_00154 1.1e-140 S Short repeat of unknown function (DUF308)
COODHJFA_00155 0.0 pepO 3.4.24.71 O Peptidase family M13
COODHJFA_00156 5.9e-115 L Single-strand binding protein family
COODHJFA_00157 0.0 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
COODHJFA_00158 1.1e-156 pflA 1.97.1.4 O Radical SAM superfamily
COODHJFA_00159 1.3e-268 recD2 3.6.4.12 L PIF1-like helicase
COODHJFA_00160 4.8e-122 orn L 3'-to-5' exoribonuclease specific for small oligoribonucleotides
COODHJFA_00161 4.8e-293 guaB 1.1.1.205 F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
COODHJFA_00162 3e-213 tagO 2.7.8.33, 2.7.8.35 M Glycosyl transferase family 4
COODHJFA_00163 1.5e-118 ywlC 2.7.7.87 J Belongs to the SUA5 family
COODHJFA_00164 6.6e-125 livF E ATPases associated with a variety of cellular activities
COODHJFA_00165 1.4e-161 E Branched-chain amino acid ATP-binding cassette transporter
COODHJFA_00166 7.7e-189 livM U Belongs to the binding-protein-dependent transport system permease family
COODHJFA_00167 5.4e-111 U Belongs to the binding-protein-dependent transport system permease family
COODHJFA_00168 1.8e-207 livK E Receptor family ligand binding region
COODHJFA_00169 8.2e-165 prmC 2.1.1.297 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
COODHJFA_00170 3.7e-191 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
COODHJFA_00171 1.3e-36 rpmE J Binds the 23S rRNA
COODHJFA_00173 4.4e-101 yebQ EGP Major facilitator Superfamily
COODHJFA_00174 7.1e-152
COODHJFA_00175 3.5e-73 def2 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
COODHJFA_00176 1.4e-166 dkgB S Oxidoreductase, aldo keto reductase family protein
COODHJFA_00177 1.5e-18 lmrB U Major Facilitator Superfamily
COODHJFA_00178 4.8e-88 K Winged helix DNA-binding domain
COODHJFA_00179 1.1e-175 glkA 2.7.1.2 G ROK family
COODHJFA_00181 7.7e-308 EGP Major Facilitator Superfamily
COODHJFA_00182 0.0 yjjK S ATP-binding cassette protein, ChvD family
COODHJFA_00183 2.5e-169 tesB I Thioesterase-like superfamily
COODHJFA_00184 3.5e-86 S Protein of unknown function (DUF3180)
COODHJFA_00185 6.5e-226 folK 1.13.11.81, 2.5.1.15, 2.7.6.3, 3.5.4.16, 3.5.4.39, 4.1.2.25, 5.1.99.8 H Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
COODHJFA_00186 4.2e-161 folP 1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8 H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
COODHJFA_00187 2.8e-117 folE 2.7.6.3, 3.5.4.16 H GTP cyclohydrolase
COODHJFA_00188 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
COODHJFA_00189 2.7e-97 hpt 2.4.2.8, 6.3.4.19 F Belongs to the purine pyrimidine phosphoribosyltransferase family
COODHJFA_00190 1.5e-211 tilS 2.4.2.8, 6.3.4.19 J Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
COODHJFA_00191 2.4e-249 dacB 3.4.16.4 M D-Ala-D-Ala carboxypeptidase 3 (S13) family
COODHJFA_00192 4.8e-299
COODHJFA_00193 4.5e-189 natA V ATPases associated with a variety of cellular activities
COODHJFA_00194 4.7e-235 epsG M Glycosyl transferase family 21
COODHJFA_00195 7.3e-281 S AI-2E family transporter
COODHJFA_00196 2.3e-178 3.4.14.13 M Glycosyltransferase like family 2
COODHJFA_00197 5.2e-204 fucO 1.1.1.1, 1.1.1.77, 1.1.99.37, 1.2.98.1 C Iron-containing alcohol dehydrogenase
COODHJFA_00198 4e-261 cma 2.1.1.79 M Mycolic acid cyclopropane synthetase
COODHJFA_00201 2.9e-160 trmB 2.1.1.297, 2.1.1.33, 2.4.99.12, 2.4.99.13, 2.4.99.14, 2.4.99.15 GT30 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COODHJFA_00203 1.2e-15 L Phage integrase family
COODHJFA_00204 4.3e-267 lacS G Psort location CytoplasmicMembrane, score 10.00
COODHJFA_00205 0.0 lacL 3.2.1.23 G Psort location Cytoplasmic, score 8.87
COODHJFA_00206 4.8e-185 lacR K Transcriptional regulator, LacI family
COODHJFA_00207 1.4e-21 L Helix-turn-helix domain
COODHJFA_00208 4e-248 G Bacterial extracellular solute-binding protein
COODHJFA_00209 4.5e-219 GK ROK family
COODHJFA_00210 2.5e-15 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00211 0.0 G Glycosyl hydrolase family 20, domain 2
COODHJFA_00212 6.7e-08 L HTH-like domain
COODHJFA_00213 2.3e-219 vex3 V ABC transporter permease
COODHJFA_00214 2.5e-212 vex1 V Efflux ABC transporter, permease protein
COODHJFA_00215 6.4e-111 vex2 V ABC transporter, ATP-binding protein
COODHJFA_00216 1.4e-11 azlC E AzlC protein
COODHJFA_00217 1.5e-97 ptpA 3.1.3.48 T low molecular weight
COODHJFA_00218 4.6e-128 folA 1.5.1.3 H dihydrofolate reductase
COODHJFA_00219 1e-167 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
COODHJFA_00220 3.4e-73 attW O OsmC-like protein
COODHJFA_00221 5.6e-189 T Universal stress protein family
COODHJFA_00222 3.1e-101 M NlpC/P60 family
COODHJFA_00223 2.9e-99 M NlpC/P60 family
COODHJFA_00224 1.7e-168 usp 3.5.1.28 CBM50 S CHAP domain
COODHJFA_00225 5e-215 serC 2.6.1.52 E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
COODHJFA_00226 1.8e-32
COODHJFA_00227 5.1e-173 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
COODHJFA_00228 5.4e-116 phoU P Plays a role in the regulation of phosphate uptake
COODHJFA_00229 4.4e-138 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COODHJFA_00230 7.3e-175 menA 2.5.1.74 H Belongs to the MenA family. Type 1 subfamily
COODHJFA_00231 2.3e-311 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
COODHJFA_00233 1.3e-218 araJ EGP Major facilitator Superfamily
COODHJFA_00234 0.0 S Domain of unknown function (DUF4037)
COODHJFA_00235 1.5e-115 S Protein of unknown function (DUF4125)
COODHJFA_00236 0.0 S alpha beta
COODHJFA_00237 9.9e-68
COODHJFA_00238 1.1e-290 pspC KT PspC domain
COODHJFA_00239 1.2e-236 tcsS3 KT PspC domain
COODHJFA_00240 2.9e-117 degU K helix_turn_helix, Lux Regulon
COODHJFA_00241 4.1e-168 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
COODHJFA_00242 8.3e-204 mdsC 2.7.1.162, 2.7.1.39 S Phosphotransferase enzyme family
COODHJFA_00243 0.0 gnpA 2.4.1.211 S Lacto-N-biose phosphorylase C-terminal domain
COODHJFA_00244 2.5e-167 G ABC transporter permease
COODHJFA_00245 6.9e-173 malC G Binding-protein-dependent transport system inner membrane component
COODHJFA_00246 3e-248 G Bacterial extracellular solute-binding protein
COODHJFA_00248 1.1e-242 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
COODHJFA_00249 7.5e-182 I Diacylglycerol kinase catalytic domain
COODHJFA_00250 1.3e-162 arbG K CAT RNA binding domain
COODHJFA_00251 0.0 crr 2.7.1.193 G pts system, glucose-specific IIABC component
COODHJFA_00252 0.0 pgm 5.4.2.2 G Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
COODHJFA_00253 1.4e-198 gmk 1.1.1.23, 2.7.4.8 S Protein conserved in bacteria
COODHJFA_00254 3.6e-73 K Transcriptional regulator
COODHJFA_00255 2.7e-277 merA 1.16.1.1, 1.8.1.7 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
COODHJFA_00256 1.1e-166 rnhA 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
COODHJFA_00257 9.1e-127 rpiA 2.7.1.12, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
COODHJFA_00259 1.6e-98
COODHJFA_00260 1.9e-262 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
COODHJFA_00261 4.3e-219 ribF 2.7.1.26, 2.7.7.2 H riboflavin kinase
COODHJFA_00262 1.9e-214 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
COODHJFA_00263 4.8e-82 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
COODHJFA_00264 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
COODHJFA_00265 7.7e-186 nusA K Participates in both transcription termination and antitermination
COODHJFA_00266 1.8e-125
COODHJFA_00267 2.9e-100 K helix_turn _helix lactose operon repressor
COODHJFA_00269 3.6e-151 E Transglutaminase/protease-like homologues
COODHJFA_00270 0.0 gcs2 S A circularly permuted ATPgrasp
COODHJFA_00271 8.7e-170 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
COODHJFA_00272 4.4e-57 rplQ J Ribosomal protein L17
COODHJFA_00273 3.4e-183 rpoA 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COODHJFA_00274 1.5e-65 rpsK J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
COODHJFA_00275 9.5e-62 rpsM J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
COODHJFA_00276 8.4e-14 rpmJ J Belongs to the bacterial ribosomal protein bL36 family
COODHJFA_00277 1.6e-32 infA J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
COODHJFA_00278 2.2e-99 adk 2.7.4.3 F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
COODHJFA_00279 1.7e-246 secY U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
COODHJFA_00280 8.1e-76 rplO J binds to the 23S rRNA
COODHJFA_00281 7e-26 rpmD J Ribosomal protein L30p/L7e
COODHJFA_00282 6.7e-96 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
COODHJFA_00283 2.4e-57 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
COODHJFA_00284 5.4e-95 rplF J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
COODHJFA_00285 5.5e-68 rpsH J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
COODHJFA_00286 9.2e-18 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
COODHJFA_00287 4.4e-103 rplE J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
COODHJFA_00288 1.3e-51 rplX J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
COODHJFA_00289 6.6e-60 rplN J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
COODHJFA_00290 6.4e-41 rpsQ J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
COODHJFA_00291 4.1e-37 rpmC J Belongs to the universal ribosomal protein uL29 family
COODHJFA_00292 2.2e-75 rplP J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
COODHJFA_00293 1.7e-100 rpsC J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
COODHJFA_00294 5.7e-56 rplV J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
COODHJFA_00295 3.7e-47 rpsS J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
COODHJFA_00296 1.8e-153 rplB J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
COODHJFA_00297 7.5e-46 rplW J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
COODHJFA_00298 3.1e-116 rplD J Forms part of the polypeptide exit tunnel
COODHJFA_00299 8.7e-116 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
COODHJFA_00300 8e-51 rpsJ J Involved in the binding of tRNA to the ribosomes
COODHJFA_00301 8.2e-137 budA 4.1.1.5 H Alpha-acetolactate decarboxylase
COODHJFA_00302 3.9e-146 ywiC S YwiC-like protein
COODHJFA_00303 0.0 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
COODHJFA_00304 4.1e-170 rhaR_1 K helix_turn_helix, arabinose operon control protein
COODHJFA_00305 1.5e-194 Z012_01000 1.1.1.14, 1.1.1.9 C Zinc-binding dehydrogenase
COODHJFA_00306 2.7e-196 EGP Major facilitator Superfamily
COODHJFA_00307 6.6e-215 2.7.1.2 GK transcriptional repressor of nag (N-acetylglucosamine) operon K02565
COODHJFA_00308 6e-75 4.4.1.5 E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
COODHJFA_00309 2.2e-233 EGP Major facilitator Superfamily
COODHJFA_00310 2.3e-179 tdh 1.1.1.14 C Zinc-binding dehydrogenase
COODHJFA_00311 0.0 glgX 3.2.1.196, 3.2.1.68 CBM48,GH13 G Belongs to the glycosyl hydrolase 13 family
COODHJFA_00312 3.7e-82 rpsI J Belongs to the universal ribosomal protein uS9 family
COODHJFA_00313 3.5e-79 rplM J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
COODHJFA_00314 0.0 malQ 2.4.1.18, 2.4.1.25, 3.2.1.196, 5.4.99.15 CBM48,GH13,GH77 G 4-alpha-glucanotransferase
COODHJFA_00315 8.4e-117
COODHJFA_00316 1.3e-111 yigZ 2.1.1.45, 3.4.13.9 S Uncharacterized protein family UPF0029
COODHJFA_00317 2.8e-185 MA20_16500 1.1.1.399, 1.1.1.95 EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
COODHJFA_00318 1.8e-117 M Bacterial capsule synthesis protein PGA_cap
COODHJFA_00319 6.3e-245 bglA 3.2.1.21 G Glycosyl hydrolase family 1
COODHJFA_00320 6.1e-160 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00321 5.5e-164 malC U Binding-protein-dependent transport system inner membrane component
COODHJFA_00322 1.3e-243 malE G Bacterial extracellular solute-binding protein
COODHJFA_00323 1.4e-217 rbsR K helix_turn _helix lactose operon repressor
COODHJFA_00324 5.2e-22
COODHJFA_00326 1.1e-61 S EamA-like transporter family
COODHJFA_00327 1.5e-186 L Helix-turn-helix domain
COODHJFA_00328 3.5e-103 L Resolvase, N terminal domain
COODHJFA_00329 8.7e-21 S EamA-like transporter family
COODHJFA_00330 3.7e-238 dinB 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
COODHJFA_00331 1.8e-223 dapC E Aminotransferase class I and II
COODHJFA_00332 2.9e-59 fdxA C 4Fe-4S binding domain
COODHJFA_00333 1.2e-269 E aromatic amino acid transport protein AroP K03293
COODHJFA_00334 7.2e-220 murB 1.3.1.98 M Cell wall formation
COODHJFA_00335 4.1e-25 rpmG J Ribosomal protein L33
COODHJFA_00339 1.5e-46 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
COODHJFA_00340 1.1e-135
COODHJFA_00341 5.7e-42 rimJ 2.3.1.128 J Acetyltransferase (GNAT) domain
COODHJFA_00342 5.1e-67 rimJ 2.3.1.128 J Acetyltransferase (GNAT) domain
COODHJFA_00343 4.1e-55 fthC 6.3.3.2 H 5-formyltetrahydrofolate cyclo-ligase family
COODHJFA_00344 4.3e-31 fmdB S Putative regulatory protein
COODHJFA_00345 6.2e-106 flgA NO SAF
COODHJFA_00346 4.8e-28 L Superfamily I DNA and RNA helicases and helicase subunits
COODHJFA_00347 0.0 L Superfamily I DNA and RNA helicases and helicase subunits
COODHJFA_00348 7.8e-188 T Forkhead associated domain
COODHJFA_00349 9.3e-49 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
COODHJFA_00350 2.4e-87 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
COODHJFA_00351 2e-146 3.2.1.8 S alpha beta
COODHJFA_00352 4e-251 pbuO S Permease family
COODHJFA_00353 2.1e-148 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
COODHJFA_00354 1.3e-171 pstA P Phosphate transport system permease
COODHJFA_00355 1.2e-156 pstC P probably responsible for the translocation of the substrate across the membrane
COODHJFA_00356 1.3e-202 pstS P Part of the ABC transporter complex PstSACB involved in phosphate import
COODHJFA_00357 3.8e-142 KT Transcriptional regulatory protein, C terminal
COODHJFA_00358 1e-208 senX3 2.7.13.3 T His Kinase A (phosphoacceptor) domain
COODHJFA_00359 4.6e-241 EGP Sugar (and other) transporter
COODHJFA_00360 5.7e-124 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
COODHJFA_00361 1.9e-236 aroG 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
COODHJFA_00362 4.8e-218 aroG 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
COODHJFA_00363 2.3e-267 pepC 3.4.22.40 E Peptidase C1-like family
COODHJFA_00364 5.2e-44 D nuclear chromosome segregation
COODHJFA_00365 1.7e-125 pcp 3.4.19.3 O Removes 5-oxoproline from various penultimate amino acid residues except L-proline
COODHJFA_00366 2.4e-150 ispD 1.1.1.405, 2.7.7.40, 2.7.7.60, 4.6.1.12 I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)
COODHJFA_00367 8e-199 yfiH Q Multi-copper polyphenol oxidoreductase laccase
COODHJFA_00368 6.6e-303 yegQ O Peptidase family U32 C-terminal domain
COODHJFA_00369 6.3e-179 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
COODHJFA_00370 5e-102 rsmD 2.1.1.171 L Conserved hypothetical protein 95
COODHJFA_00371 0.0 recG 3.6.4.12 L helicase superfamily c-terminal domain
COODHJFA_00372 2.5e-29 rpmB J Ribosomal L28 family
COODHJFA_00373 3.2e-197 yegV G pfkB family carbohydrate kinase
COODHJFA_00374 1.1e-239 yxiO S Vacuole effluxer Atg22 like
COODHJFA_00375 7.9e-129 K helix_turn_helix, mercury resistance
COODHJFA_00376 6.3e-63 T Toxic component of a toxin-antitoxin (TA) module
COODHJFA_00377 2.4e-53 relB L RelB antitoxin
COODHJFA_00378 6.1e-25 yxiO G Major facilitator Superfamily
COODHJFA_00379 8.9e-182 K Helix-turn-helix XRE-family like proteins
COODHJFA_00380 8.9e-21
COODHJFA_00381 9.5e-115 S Alpha/beta hydrolase family
COODHJFA_00385 1.9e-17 EGP Major facilitator Superfamily
COODHJFA_00386 5e-24 XK27_04590 S NADPH-dependent FMN reductase
COODHJFA_00387 0.0 fas 2.3.1.179 I Beta-ketoacyl synthase, C-terminal domain
COODHJFA_00388 2.5e-300 pccB I Carboxyl transferase domain
COODHJFA_00389 0.0 accA 6.3.4.14, 6.4.1.2, 6.4.1.3 I Carbamoyl-phosphate synthase L chain, ATP binding domain protein
COODHJFA_00390 2.6e-90 bioY S BioY family
COODHJFA_00391 6.5e-162 birA 2.7.1.33, 6.3.4.15 H Biotin/lipoate A/B protein ligase family
COODHJFA_00392 0.0
COODHJFA_00393 1.4e-164 QT PucR C-terminal helix-turn-helix domain
COODHJFA_00394 2.7e-123 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
COODHJFA_00395 1e-72 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
COODHJFA_00396 9.6e-146 K Psort location Cytoplasmic, score
COODHJFA_00397 7e-110 nusG K Participates in transcription elongation, termination and antitermination
COODHJFA_00398 1.8e-31 secE U Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
COODHJFA_00400 1.3e-229 aspC E DegT/DnrJ/EryC1/StrS aminotransferase family
COODHJFA_00401 3e-221 G polysaccharide deacetylase
COODHJFA_00402 8.3e-199 proB 2.7.2.11 E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
COODHJFA_00403 2.3e-311 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
COODHJFA_00404 5.8e-39 rpmA J Ribosomal L27 protein
COODHJFA_00405 1.4e-47 rplU J This protein binds to 23S rRNA in the presence of protein L20
COODHJFA_00406 0.0 rne 3.1.26.12 J Ribonuclease E/G family
COODHJFA_00407 3.6e-232 dapE 3.5.1.18 E Peptidase dimerisation domain
COODHJFA_00408 1.9e-167 mdcF S Transporter, auxin efflux carrier (AEC) family protein
COODHJFA_00409 5.7e-166 dapA 4.1.2.28, 4.3.3.7 EM Dihydrodipicolinate synthetase family
COODHJFA_00410 3.2e-149 S Amidohydrolase
COODHJFA_00411 5.4e-202 fucP G Major Facilitator Superfamily
COODHJFA_00412 2.8e-148 IQ KR domain
COODHJFA_00413 1.1e-250 4.2.1.68 M Enolase C-terminal domain-like
COODHJFA_00414 4.1e-192 K Bacterial regulatory proteins, lacI family
COODHJFA_00415 9e-254 V Efflux ABC transporter, permease protein
COODHJFA_00416 5.2e-139 V ATPases associated with a variety of cellular activities
COODHJFA_00417 1.6e-28 S Protein of unknown function (DUF1778)
COODHJFA_00418 2e-91 K Acetyltransferase (GNAT) family
COODHJFA_00419 9.3e-283 maf 1.1.1.25, 2.1.1.190, 3.6.1.55, 3.6.1.67 DF Maf-like protein
COODHJFA_00420 1.7e-207 thrB 2.7.1.39 E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
COODHJFA_00421 2.8e-238 hom 1.1.1.3 E Homoserine dehydrogenase
COODHJFA_00422 5.6e-54 nagE 2.7.1.193, 2.7.1.199 G phosphotransferase system, EIIB
COODHJFA_00423 3e-55 2.7.1.208 G phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
COODHJFA_00424 2.4e-303 lysA 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
COODHJFA_00425 0.0 argS 6.1.1.19 J Arginyl-tRNA synthetase
COODHJFA_00426 8.1e-131 K Bacterial regulatory proteins, tetR family
COODHJFA_00427 8e-222 G Transmembrane secretion effector
COODHJFA_00428 6.8e-256 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
COODHJFA_00429 1.5e-255 nox 1.6.3.4 C Pyridine nucleotide-disulphide oxidoreductase
COODHJFA_00430 2.3e-156 ET Bacterial periplasmic substrate-binding proteins
COODHJFA_00431 3.7e-120 ytmL P Binding-protein-dependent transport system inner membrane component
COODHJFA_00432 1.2e-138 P Binding-protein-dependent transport system inner membrane component
COODHJFA_00433 3.5e-105 S L-2-amino-thiazoline-4-carboxylic acid hydrolase
COODHJFA_00434 1.3e-131 yxeO 3.6.3.21 E ATPases associated with a variety of cellular activities
COODHJFA_00435 5.3e-220 pyrD 1.3.1.14, 1.3.98.1 F Dihydroorotate dehydrogenase
COODHJFA_00436 3.7e-21 2.7.13.3 T Histidine kinase
COODHJFA_00437 8.4e-20 S Bacterial PH domain
COODHJFA_00438 3.2e-132 leuD 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
COODHJFA_00439 6.5e-273 leuC 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
COODHJFA_00440 4.1e-139 ltbR K Transcriptional regulator, IclR family, C-terminal domain protein
COODHJFA_00441 7.6e-263 S Calcineurin-like phosphoesterase
COODHJFA_00442 0.0 ppk 2.7.4.1 P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
COODHJFA_00443 5e-233 mutT 3.6.1.13, 3.6.1.55 LT Phosphoglycerate mutase family
COODHJFA_00444 8.5e-132
COODHJFA_00445 0.0 G N-terminal domain of (some) glycogen debranching enzymes
COODHJFA_00446 9.1e-140 P Binding-protein-dependent transport system inner membrane component
COODHJFA_00447 4.4e-209 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00448 1.9e-207 G Bacterial extracellular solute-binding protein
COODHJFA_00449 7.2e-128 K helix_turn _helix lactose operon repressor
COODHJFA_00450 3.9e-116 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
COODHJFA_00451 2.8e-82 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
COODHJFA_00452 1.7e-215 ugpQ 3.1.4.46 C Glycerophosphoryl diester phosphodiesterase family
COODHJFA_00453 1e-217 gluQ 6.1.1.17 J Belongs to the class-I aminoacyl-tRNA synthetase family
COODHJFA_00455 0.0 clpB O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
COODHJFA_00456 2.3e-162 S Auxin Efflux Carrier
COODHJFA_00457 5.8e-157 fahA Q Fumarylacetoacetate (FAA) hydrolase family
COODHJFA_00458 1.2e-116 S Domain of unknown function (DUF4190)
COODHJFA_00459 7.9e-163
COODHJFA_00460 1.6e-235 glf 5.4.99.9 M UDP-galactopyranose mutase
COODHJFA_00461 4.8e-64 K Helix-turn-helix domain
COODHJFA_00463 8.2e-27 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
COODHJFA_00464 2.6e-35
COODHJFA_00465 3.9e-120 gluP 3.4.21.105 S Rhomboid family
COODHJFA_00466 2.6e-69 crgA D Involved in cell division
COODHJFA_00467 1.8e-118 S Bacterial protein of unknown function (DUF881)
COODHJFA_00468 9.3e-228 srtA 3.4.22.70 M Sortase family
COODHJFA_00469 2e-120 trpG 2.6.1.85 EH para-aminobenzoate synthase glutamine amidotransferase component II
COODHJFA_00470 0.0 pknB 2.7.11.1 KLT Protein tyrosine kinase
COODHJFA_00471 1e-173 T Protein tyrosine kinase
COODHJFA_00472 6.3e-263 pbpA M penicillin-binding protein
COODHJFA_00473 2e-278 rodA D Belongs to the SEDS family
COODHJFA_00474 1.4e-271 pstP 3.1.3.16 T Sigma factor PP2C-like phosphatases
COODHJFA_00475 1e-74 fhaB T Inner membrane component of T3SS, cytoplasmic domain
COODHJFA_00476 2e-129 fhaA T Protein of unknown function (DUF2662)
COODHJFA_00477 0.0 dpp4 3.4.14.5 E Dipeptidyl peptidase IV (DPP IV) N-terminal region
COODHJFA_00478 3.3e-111 pldB 3.1.1.5 I Serine aminopeptidase, S33
COODHJFA_00479 3.4e-70 pldB 3.1.1.5 I Serine aminopeptidase, S33
COODHJFA_00480 3.4e-91 hsp20 O Hsp20/alpha crystallin family
COODHJFA_00481 1.2e-177 yddG EG EamA-like transporter family
COODHJFA_00482 1.3e-23
COODHJFA_00483 5.7e-250 S Putative esterase
COODHJFA_00484 0.0 lysX S Uncharacterised conserved protein (DUF2156)
COODHJFA_00485 4.8e-201 msrA 1.8.4.11, 1.8.4.12 O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
COODHJFA_00486 4.4e-132 S Pyridoxamine 5'-phosphate oxidase
COODHJFA_00487 1.4e-198 S Fic/DOC family
COODHJFA_00488 1.5e-160 M Glycosyltransferase like family 2
COODHJFA_00489 0.0 KL Domain of unknown function (DUF3427)
COODHJFA_00490 4.1e-74 nudG 3.6.1.55, 3.6.1.65 L NUDIX domain
COODHJFA_00491 1.2e-52 ybjQ S Putative heavy-metal-binding
COODHJFA_00492 5.3e-145 yplQ S Haemolysin-III related
COODHJFA_00494 1.4e-258 tgt 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
COODHJFA_00495 1.5e-262 degP O Domain present in PSD-95, Dlg, and ZO-1/2.
COODHJFA_00496 0.0 cadA P E1-E2 ATPase
COODHJFA_00497 1.8e-278 fprA 1.18.1.2, 1.19.1.1 C Pyridine nucleotide-disulphide oxidoreductase
COODHJFA_00498 1.5e-172 htpX O Belongs to the peptidase M48B family
COODHJFA_00500 1.4e-148 yicL EG EamA-like transporter family
COODHJFA_00501 6.1e-199 fbaA 4.1.2.13 G Fructose-bisphosphate aldolase class-II
COODHJFA_00502 3.1e-245 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
COODHJFA_00503 4.1e-281 clcA P Voltage gated chloride channel
COODHJFA_00504 2.4e-147 U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
COODHJFA_00505 8.7e-58 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
COODHJFA_00506 1e-201 K helix_turn _helix lactose operon repressor
COODHJFA_00508 6.1e-301 gtfA 2.4.1.329, 2.4.1.7 GH13 G Domain of unknown function (DUF1964)
COODHJFA_00509 1.2e-278 scrT G Transporter major facilitator family protein
COODHJFA_00510 2.8e-180 K helix_turn _helix lactose operon repressor
COODHJFA_00511 1.4e-251 yhjE EGP Sugar (and other) transporter
COODHJFA_00512 2.4e-203 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
COODHJFA_00513 2.4e-203 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
COODHJFA_00514 0.0 3.2.1.10, 3.2.1.20, 3.2.1.93 GH13,GH31 G Alpha-amylase domain
COODHJFA_00515 1.2e-186 K Psort location Cytoplasmic, score
COODHJFA_00516 0.0 M cell wall anchor domain protein
COODHJFA_00517 0.0 M domain protein
COODHJFA_00518 3.6e-174 3.4.22.70 M Sortase family
COODHJFA_00519 0.0 malQ 2.4.1.18, 2.4.1.25, 3.2.1.196, 5.4.99.15 CBM48,GH13,GH77 G 4-alpha-glucanotransferase
COODHJFA_00520 0.0 malL 3.2.1.1, 5.4.99.16 GH13 G Alpha-amylase domain
COODHJFA_00521 2.3e-234 malE G Bacterial extracellular solute-binding protein
COODHJFA_00522 1.3e-252 malF G Binding-protein-dependent transport system inner membrane component
COODHJFA_00523 8.5e-165 malG G Binding-protein-dependent transport system inner membrane component
COODHJFA_00524 1.9e-144 traX S TraX protein
COODHJFA_00525 1.1e-194 K Psort location Cytoplasmic, score
COODHJFA_00526 0.0 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 M Aamy_C
COODHJFA_00527 0.0 dnaK O Heat shock 70 kDa protein
COODHJFA_00528 1e-58 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
COODHJFA_00529 9.4e-157 dnaJ1 O DnaJ molecular chaperone homology domain
COODHJFA_00530 1.2e-103 hspR K transcriptional regulator, MerR family
COODHJFA_00531 3.1e-17 F Psort location CytoplasmicMembrane, score 10.00
COODHJFA_00532 3.9e-115 luxC 1.2.1.50 C Acyl-CoA reductase (LuxC)
COODHJFA_00533 2.1e-140 IQ Oxidoreductase, short chain dehydrogenase reductase family protein
COODHJFA_00534 8.8e-127 S HAD hydrolase, family IA, variant 3
COODHJFA_00535 1.6e-134 dedA S SNARE associated Golgi protein
COODHJFA_00536 2.4e-123 cpaE D bacterial-type flagellum organization
COODHJFA_00537 9.1e-192 cpaF U Type II IV secretion system protein
COODHJFA_00538 1.2e-74 U Type ii secretion system
COODHJFA_00539 3.1e-116 gspF NU Type II secretion system (T2SS), protein F
COODHJFA_00540 1.1e-41 S Protein of unknown function (DUF4244)
COODHJFA_00541 1.4e-57 U TadE-like protein
COODHJFA_00542 6.5e-54 S TIGRFAM helicase secretion neighborhood TadE-like protein
COODHJFA_00543 4.5e-216 dagK 2.7.1.107 I Diacylglycerol kinase catalytic domain protein
COODHJFA_00544 6.5e-97 K Bacterial regulatory proteins, tetR family
COODHJFA_00545 0.0 dnaX 2.7.7.7 L DNA polymerase III subunit gamma tau
COODHJFA_00546 8.7e-110 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
COODHJFA_00547 3.3e-196 3.4.22.70 M Sortase family
COODHJFA_00548 4.8e-69 V Abi-like protein
COODHJFA_00549 3.6e-193 3.6.4.12 K Putative ATP-dependent DNA helicase recG C-terminal
COODHJFA_00550 1.3e-134 ask 1.1.1.3, 2.7.2.4 E Amino acid kinase family
COODHJFA_00551 9.4e-98 askB 1.1.1.3, 2.7.2.4 E ACT domain
COODHJFA_00552 2.6e-213 asd 1.2.1.11, 1.2.1.12 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
COODHJFA_00553 9.6e-112
COODHJFA_00554 1.7e-170 L Domain of unknown function (DUF4862)
COODHJFA_00555 6.3e-169 2.7.1.2 GK ROK family
COODHJFA_00556 1.3e-125 nanE 5.1.3.9 G Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
COODHJFA_00557 9.8e-160 3.5.1.106 I carboxylic ester hydrolase activity
COODHJFA_00558 1.3e-303 E Bacterial extracellular solute-binding proteins, family 5 Middle
COODHJFA_00559 4.6e-153 oppB6 EP Binding-protein-dependent transport system inner membrane component
COODHJFA_00560 0.0 oppD EP Oligopeptide/dipeptide transporter, C-terminal region
COODHJFA_00561 1.7e-148 oppF E ATPases associated with a variety of cellular activities
COODHJFA_00562 2e-180 nanL 4.1.2.28, 4.3.3.7 EM Dihydrodipicolinate synthetase family
COODHJFA_00563 3.2e-147 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
COODHJFA_00565 0.0 nanI 3.2.1.18 GH33 G BNR repeat-like domain
COODHJFA_00566 2.6e-244 P Domain of unknown function (DUF4143)
COODHJFA_00567 3.4e-152 K FCD
COODHJFA_00568 9.1e-270 S Calcineurin-like phosphoesterase
COODHJFA_00569 0.0 leuA 2.3.3.13 E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
COODHJFA_00570 0.0 mrcB 2.4.1.129, 3.4.16.4 GT51 M Transglycosylase
COODHJFA_00571 1.6e-168 3.6.1.27 I PAP2 superfamily
COODHJFA_00572 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
COODHJFA_00573 1.6e-115 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
COODHJFA_00574 1.9e-206 holB 2.7.7.7 L DNA polymerase III
COODHJFA_00575 1.2e-104 K helix_turn _helix lactose operon repressor
COODHJFA_00576 3.3e-37 ptsH G PTS HPr component phosphorylation site
COODHJFA_00578 7.8e-294 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
COODHJFA_00579 4.2e-30 3.4.17.14 M domain, Protein
COODHJFA_00580 7.1e-21 D nuclear chromosome segregation
COODHJFA_00581 9.6e-106 S Phosphatidylethanolamine-binding protein
COODHJFA_00582 2e-310 pepD E Peptidase family C69
COODHJFA_00583 3.1e-289 fhs 1.5.1.5, 3.5.4.9, 6.3.4.3 F Formate-tetrahydrofolate ligase
COODHJFA_00584 3.3e-61 S Macrophage migration inhibitory factor (MIF)
COODHJFA_00585 1.4e-95 S GtrA-like protein
COODHJFA_00586 9.7e-248 EGP Major facilitator Superfamily
COODHJFA_00587 7.5e-123 3.1.3.3, 3.1.3.73 G Phosphoglycerate mutase family
COODHJFA_00588 2.4e-117
COODHJFA_00589 1.2e-227 3.1.1.31 G Lactonase, 7-bladed beta-propeller
COODHJFA_00590 9.5e-149 S Protein of unknown function (DUF805)
COODHJFA_00592 4.4e-291 gltX 6.1.1.17 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COODHJFA_00595 3.3e-65 L Phage integrase, N-terminal SAM-like domain
COODHJFA_00597 9.7e-296 efeU_1 P Iron permease FTR1 family
COODHJFA_00598 2.8e-99 tpd P Fe2+ transport protein
COODHJFA_00599 5e-232 S Predicted membrane protein (DUF2318)
COODHJFA_00600 7e-221 macB_2 V ABC transporter permease
COODHJFA_00601 6.1e-199 Z012_06715 V FtsX-like permease family
COODHJFA_00602 1.7e-145 macB V ABC transporter, ATP-binding protein
COODHJFA_00603 1.7e-67 S FMN_bind
COODHJFA_00604 3.2e-101 K Psort location Cytoplasmic, score 8.87
COODHJFA_00606 1.8e-306 pip S YhgE Pip domain protein
COODHJFA_00607 0.0 pip S YhgE Pip domain protein
COODHJFA_00608 2.5e-253 S Putative ABC-transporter type IV
COODHJFA_00609 1.5e-272 gnd 1.1.1.343, 1.1.1.44 H Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
COODHJFA_00610 1.3e-140 pgl 3.1.1.31, 3.5.99.6 G Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
COODHJFA_00611 3.7e-193 opcA G Glucose-6-phosphate dehydrogenase subunit
COODHJFA_00612 2.3e-303 zwf 1.1.1.363, 1.1.1.49 G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
COODHJFA_00613 1.7e-289 3.5.2.6 V Beta-lactamase enzyme family
COODHJFA_00615 1.2e-301 pepD E Peptidase family C69
COODHJFA_00616 1.1e-197 XK27_01805 M Glycosyltransferase like family 2
COODHJFA_00617 1e-151 icaR K Bacterial regulatory proteins, tetR family
COODHJFA_00618 4.9e-171 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
COODHJFA_00619 1e-227 amt U Ammonium Transporter Family
COODHJFA_00620 1e-54 glnB K Nitrogen regulatory protein P-II
COODHJFA_00621 0.0 2.7.7.19, 2.7.7.59 O Nucleotidyltransferase domain
COODHJFA_00622 1.9e-240 dinF V MatE
COODHJFA_00623 3.3e-257 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
COODHJFA_00624 8.6e-257 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Domain of unknown function (DUF1727)
COODHJFA_00625 3.7e-142 cobQ S CobB/CobQ-like glutamine amidotransferase domain
COODHJFA_00626 4.6e-37 S granule-associated protein
COODHJFA_00627 0.0 ubiB S ABC1 family
COODHJFA_00628 3.1e-307 3.2.1.185 GH127 S Beta-L-arabinofuranosidase, GH127
COODHJFA_00629 1.8e-143 yggS S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
COODHJFA_00630 1.3e-187 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
COODHJFA_00631 4.6e-48 rpsF J Binds together with S18 to 16S ribosomal RNA
COODHJFA_00632 4e-76 ssb1 L Single-stranded DNA-binding protein
COODHJFA_00633 2e-36 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
COODHJFA_00634 2.7e-71 rplI J Binds to the 23S rRNA
COODHJFA_00637 9.8e-158 tnp3503b 2.7.7.7 L Transposase and inactivated derivatives
COODHJFA_00638 4.1e-39 L Transposase
COODHJFA_00639 3.8e-117
COODHJFA_00640 4e-130 V ABC transporter
COODHJFA_00641 1.3e-111 K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
COODHJFA_00642 6.5e-210 2.7.13.3 T Histidine kinase
COODHJFA_00643 1.3e-202 EGP Major Facilitator Superfamily
COODHJFA_00644 6.2e-43
COODHJFA_00645 8.6e-60
COODHJFA_00646 9.5e-129 xerH L Belongs to the 'phage' integrase family
COODHJFA_00647 1e-128 gla U Belongs to the MIP aquaporin (TC 1.A.8) family
COODHJFA_00648 0.0 pacS 1.9.3.1, 3.6.3.54 P E1-E2 ATPase
COODHJFA_00649 1.3e-42 csoR S Metal-sensitive transcriptional repressor
COODHJFA_00650 1.6e-210 rmuC S RmuC family
COODHJFA_00651 3.7e-111 pyrE 2.4.2.10 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
COODHJFA_00652 2.4e-170 spoU 2.1.1.185 J RNA methyltransferase TrmH family
COODHJFA_00653 1.7e-178
COODHJFA_00654 8.7e-161 K Psort location Cytoplasmic, score
COODHJFA_00655 2.7e-50 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COODHJFA_00656 2.7e-288 gatA 6.3.5.6, 6.3.5.7 F Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
COODHJFA_00657 2.1e-282 gatB 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COODHJFA_00658 1.1e-195 2.3.1.57 J Acetyltransferase (GNAT) domain
COODHJFA_00659 3.3e-52 S Protein of unknown function (DUF2469)
COODHJFA_00660 0.0 5.4.99.9 H Flavin containing amine oxidoreductase
COODHJFA_00661 2.7e-293 rho K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
COODHJFA_00663 1.9e-37 pabC 2.6.1.42, 4.1.3.38 EH Amino-transferase class IV
COODHJFA_00664 8.3e-171 L Transposase
COODHJFA_00665 5.1e-50 K helix_turn_helix, arabinose operon control protein
COODHJFA_00666 2.6e-154 araN G Bacterial extracellular solute-binding protein
COODHJFA_00667 9.5e-121 lacF P Binding-protein-dependent transport system inner membrane component
COODHJFA_00668 1.3e-114 araQ U Binding-protein-dependent transport system inner membrane component
COODHJFA_00669 1.4e-131 rafA 3.2.1.22 G alpha-galactosidase
COODHJFA_00670 6.8e-63 tyrA 5.4.99.5 E Chorismate mutase type II
COODHJFA_00671 0.0 S domain protein
COODHJFA_00672 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
COODHJFA_00673 2.3e-287 E Bacterial extracellular solute-binding proteins, family 5 Middle
COODHJFA_00674 1.3e-127 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
COODHJFA_00675 1.2e-132 KT Transcriptional regulatory protein, C terminal
COODHJFA_00676 1.4e-79
COODHJFA_00677 4.8e-97 mntP P Probably functions as a manganese efflux pump
COODHJFA_00678 2.8e-90 ppa 3.6.1.1 C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
COODHJFA_00679 0.0 glgE 2.4.99.16 GH13 G Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB
COODHJFA_00680 0.0 K RNA polymerase II activating transcription factor binding
COODHJFA_00682 1.6e-207 metAA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
COODHJFA_00683 6.4e-148 atpB C it plays a direct role in the translocation of protons across the membrane
COODHJFA_00684 1.7e-29 atpE C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
COODHJFA_00685 2.9e-61 atpF C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
COODHJFA_00686 2.4e-150 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
COODHJFA_00687 1.3e-309 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
COODHJFA_00688 5.5e-164 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
COODHJFA_00689 6.1e-282 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
COODHJFA_00690 3.6e-48 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
COODHJFA_00691 1.4e-130 nucS L Cleaves both 3' and 5' ssDNA extremities of branched DNA structures
COODHJFA_00692 3.6e-158 fkbB 5.2.1.8 M FKBP-type peptidyl-prolyl cis-trans isomerase
COODHJFA_00693 6e-182
COODHJFA_00694 1.9e-178
COODHJFA_00695 1.7e-171 trxA2 O Tetratricopeptide repeat
COODHJFA_00696 3.4e-117 cyaA 4.6.1.1 S CYTH
COODHJFA_00699 3.6e-64 psp1 3.5.99.10 J Endoribonuclease L-PSP
COODHJFA_00700 2.5e-188 plsC2 2.3.1.51 I Phosphate acyltransferases
COODHJFA_00701 4.6e-180 gpsA 1.1.1.94 I NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
COODHJFA_00702 5.4e-228 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
COODHJFA_00703 2.9e-218 P Bacterial extracellular solute-binding protein
COODHJFA_00704 9.9e-161 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00705 2.4e-151 U Binding-protein-dependent transport system inner membrane component
COODHJFA_00706 5.7e-239 3.6.3.30 E Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
COODHJFA_00707 3.7e-185 S CAAX protease self-immunity
COODHJFA_00708 3.5e-135 M Mechanosensitive ion channel
COODHJFA_00709 2.5e-272 aspA 4.3.1.1 E Fumarase C C-terminus
COODHJFA_00710 9.3e-11 L Transposase DDE domain
COODHJFA_00711 5.7e-133 S Sulfite exporter TauE/SafE
COODHJFA_00712 1.1e-261 aslB C Iron-sulfur cluster-binding domain
COODHJFA_00713 3.5e-194 K helix_turn _helix lactose operon repressor
COODHJFA_00714 4.7e-306 Z012_09690 P Domain of unknown function (DUF4976)
COODHJFA_00715 1.4e-264 G Bacterial extracellular solute-binding protein
COODHJFA_00716 2.9e-165 malC P Binding-protein-dependent transport system inner membrane component
COODHJFA_00717 1.6e-177 P Binding-protein-dependent transport system inner membrane component
COODHJFA_00718 2.2e-237 S AAA domain
COODHJFA_00719 3e-41 L Transposase, Mutator family
COODHJFA_00720 5e-106 K Bacterial regulatory proteins, tetR family
COODHJFA_00721 1.9e-258 MA20_36090 S Psort location Cytoplasmic, score 8.87
COODHJFA_00722 1.2e-85 ogt 2.1.1.63, 3.2.2.20 L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
COODHJFA_00723 2e-80 acpS 2.7.8.7, 3.2.1.52 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
COODHJFA_00724 1.3e-70 ams 2.4.1.4, 3.2.1.1, 5.4.99.16 GH13 G Alpha amylase, catalytic domain
COODHJFA_00725 4.4e-17 P Sodium/hydrogen exchanger family
COODHJFA_00727 1e-80
COODHJFA_00728 0.0 Q von Willebrand factor (vWF) type A domain
COODHJFA_00729 4.3e-278 M LPXTG cell wall anchor motif
COODHJFA_00731 3.2e-86
COODHJFA_00732 1.7e-109
COODHJFA_00733 1e-41 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
COODHJFA_00734 0.0 pnp 2.7.7.8 J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
COODHJFA_00735 2.2e-120 V ABC transporter, ATP-binding protein
COODHJFA_00736 2e-33 macB_7 V FtsX-like permease family
COODHJFA_00737 2.4e-88 lemA S LemA family
COODHJFA_00738 0.0 S Predicted membrane protein (DUF2207)
COODHJFA_00739 2.1e-09 S Predicted membrane protein (DUF2207)
COODHJFA_00740 1.1e-222 S Predicted membrane protein (DUF2207)
COODHJFA_00741 2.5e-13
COODHJFA_00742 2.4e-169 1.1.1.65 C Oxidoreductase, aldo keto reductase family protein
COODHJFA_00743 2.5e-200 iunH1 3.2.2.1 F Inosine-uridine preferring nucleoside hydrolase
COODHJFA_00744 2.2e-108 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
COODHJFA_00745 1e-34 CP_0960 S Belongs to the UPF0109 family
COODHJFA_00746 7e-62 rpsP J Belongs to the bacterial ribosomal protein bS16 family
COODHJFA_00747 8.4e-206 S Endonuclease/Exonuclease/phosphatase family
COODHJFA_00748 7.9e-270 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
COODHJFA_00749 2.3e-162 P Cation efflux family
COODHJFA_00750 0.0 cysS 6.1.1.16 J Belongs to the class-I aminoacyl-tRNA synthetase family
COODHJFA_00751 2e-136 guaA1 6.3.5.2 F Peptidase C26
COODHJFA_00753 1.8e-112
COODHJFA_00754 6.4e-103 dam 2.1.1.72 H D12 class N6 adenine-specific DNA methyltransferase
COODHJFA_00755 0.0 yjjK S ABC transporter
COODHJFA_00756 3.9e-72 vapC S Toxic component of a toxin-antitoxin (TA) module. An RNase
COODHJFA_00757 3.9e-44 stbC S Plasmid stability protein
COODHJFA_00758 9e-93 ilvN 2.2.1.6 E ACT domain
COODHJFA_00759 0.0 ilvB 2.2.1.6 H Thiamine pyrophosphate enzyme, central domain
COODHJFA_00760 9.7e-135 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
COODHJFA_00761 9.3e-21 rpmF J Belongs to the bacterial ribosomal protein bL32 family
COODHJFA_00762 1.5e-115 yceD S Uncharacterized ACR, COG1399
COODHJFA_00763 5.7e-77
COODHJFA_00764 6e-88 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
COODHJFA_00765 2.4e-49 S Protein of unknown function (DUF3039)
COODHJFA_00766 1.6e-196 yghZ C Aldo/keto reductase family
COODHJFA_00767 1.1e-77 soxR K MerR, DNA binding
COODHJFA_00768 8.2e-119
COODHJFA_00769 3.2e-250 pncB 6.3.4.21 F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
COODHJFA_00770 1.1e-144 rph 2.7.7.56, 3.6.1.66 J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
COODHJFA_00771 5.9e-127 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
COODHJFA_00772 1.2e-175 S Auxin Efflux Carrier
COODHJFA_00775 0.0 pgi 5.3.1.9 G Belongs to the GPI family
COODHJFA_00776 1.3e-265 abcT3 P ATPases associated with a variety of cellular activities
COODHJFA_00777 0.0 opuAB P Binding-protein-dependent transport system inner membrane component
COODHJFA_00779 8.1e-60 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
COODHJFA_00780 1.5e-164 lepB 3.4.21.89 U Belongs to the peptidase S26 family
COODHJFA_00781 2.5e-158 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
COODHJFA_00782 1.9e-211 K helix_turn _helix lactose operon repressor
COODHJFA_00783 2.7e-12 araD 4.1.2.17, 5.1.3.4 G Class II Aldolase and Adducin N-terminal domain
COODHJFA_00784 0.0 fadD 6.2.1.3 I AMP-binding enzyme
COODHJFA_00785 1.1e-40 araE EGP Major facilitator Superfamily
COODHJFA_00786 1.7e-20 araE EGP Major facilitator Superfamily
COODHJFA_00788 0.0 cydD V ABC transporter transmembrane region
COODHJFA_00789 7.9e-260 G Bacterial extracellular solute-binding protein
COODHJFA_00790 0.0 lacZ5 3.2.1.23 G Psort location Cytoplasmic, score 8.87
COODHJFA_00791 3.9e-259 G Bacterial extracellular solute-binding protein
COODHJFA_00792 1e-278 G Bacterial extracellular solute-binding protein
COODHJFA_00793 4.5e-143 coaX 2.7.1.33 H Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
COODHJFA_00794 8.8e-290 E ABC transporter, substrate-binding protein, family 5
COODHJFA_00795 1.3e-166 P Binding-protein-dependent transport system inner membrane component
COODHJFA_00796 2.5e-146 EP Binding-protein-dependent transport system inner membrane component
COODHJFA_00797 6.5e-137 oppD EP oligopeptide transport protein of the ABC superfamily, ATP-binding component
COODHJFA_00798 1.3e-137 sapF E ATPases associated with a variety of cellular activities
COODHJFA_00799 4.8e-193 cbs 2.5.1.47, 4.2.1.22 E Pyridoxal-phosphate dependent enzyme
COODHJFA_00800 1.2e-219 metB 2.5.1.48, 4.4.1.1, 4.4.1.8 E Cys/Met metabolism PLP-dependent enzyme
COODHJFA_00801 0.0 recQ 3.6.4.12 L ATP-dependent DNA helicase RecQ
COODHJFA_00802 8e-93 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
COODHJFA_00803 1.7e-104 cysE 2.3.1.178 J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
COODHJFA_00804 8.5e-268 yhdG E aromatic amino acid transport protein AroP K03293
COODHJFA_00805 1.5e-263 alr 5.1.1.1 M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
COODHJFA_00806 3.1e-245 dgt 3.1.5.1 F Phosphohydrolase-associated domain
COODHJFA_00807 0.0 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
COODHJFA_00808 6.9e-69 S PIN domain
COODHJFA_00809 5.1e-34
COODHJFA_00810 5.3e-156 pdxS 4.3.3.6 H Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
COODHJFA_00811 1.1e-115 pdxT 4.3.3.6 H Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
COODHJFA_00812 5.9e-296 EK Alanine-glyoxylate amino-transferase
COODHJFA_00813 3.1e-52 ybiR P Citrate transporter
COODHJFA_00814 6.7e-142 ybiR P Citrate transporter
COODHJFA_00815 3.3e-30
COODHJFA_00816 7e-43 G Alpha-L-arabinofuranosidase C-terminal domain
COODHJFA_00817 3e-159 K Helix-turn-helix domain, rpiR family
COODHJFA_00820 3.6e-257 G Bacterial extracellular solute-binding protein
COODHJFA_00821 9.9e-225 K helix_turn _helix lactose operon repressor
COODHJFA_00822 0.0 3.2.1.10 GH13 G Alpha amylase, catalytic domain protein
COODHJFA_00823 4.5e-13 L Psort location Cytoplasmic, score 8.87
COODHJFA_00824 0.0 E ABC transporter, substrate-binding protein, family 5
COODHJFA_00825 2.1e-85 msrA 1.8.4.11, 1.8.4.12 O peptide-methionine (S)-S-oxide reductase activity
COODHJFA_00826 5.3e-134 V ATPases associated with a variety of cellular activities
COODHJFA_00827 8e-177 M Conserved repeat domain
COODHJFA_00828 5.6e-278 macB_8 V MacB-like periplasmic core domain
COODHJFA_00829 0.0 dxs 2.2.1.7 H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
COODHJFA_00830 2.4e-181 adh3 C Zinc-binding dehydrogenase
COODHJFA_00831 9.6e-86 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
COODHJFA_00832 4.2e-225 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
COODHJFA_00833 1.2e-68 zur P Belongs to the Fur family
COODHJFA_00834 2.6e-84 ylbB V FtsX-like permease family
COODHJFA_00835 5.8e-28 ylbB V FtsX-like permease family
COODHJFA_00836 1.1e-70 XK27_06785 V ABC transporter
COODHJFA_00837 7.1e-64
COODHJFA_00838 1.1e-84 zur P Ferric uptake regulator family
COODHJFA_00839 7.8e-140 S TIGRFAM TIGR03943 family protein
COODHJFA_00840 6.1e-181 ycgR S Predicted permease
COODHJFA_00842 2.3e-154 P Zinc-uptake complex component A periplasmic
COODHJFA_00843 0.0 XK27_08315 M Psort location CytoplasmicMembrane, score 9.26
COODHJFA_00844 8.4e-298 aldH 1.2.1.3, 1.2.1.5 C Aldehyde dehydrogenase family
COODHJFA_00845 2.2e-243 purD 6.3.4.13 F Belongs to the GARS family
COODHJFA_00846 9.2e-184 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
COODHJFA_00847 3.5e-293 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
COODHJFA_00848 2.3e-298 umuC 2.7.7.7 L DNA-damage repair protein (DNA polymerase IV) K00961
COODHJFA_00849 3.8e-31
COODHJFA_00850 3.7e-12 C Aldo/keto reductase family
COODHJFA_00851 1.1e-102 mug 3.2.2.28 L Uracil DNA glycosylase superfamily
COODHJFA_00852 2.4e-08 S Protein of unknown function (DUF4230)
COODHJFA_00855 1.5e-29 S Protein of unknown function (DUF4230)
COODHJFA_00856 1.9e-144
COODHJFA_00857 6.6e-111 Q D-alanine [D-alanyl carrier protein] ligase activity
COODHJFA_00858 9.1e-256 Q D-alanine [D-alanyl carrier protein] ligase activity
COODHJFA_00859 4.8e-222 I alpha/beta hydrolase fold
COODHJFA_00860 0.0 purL 6.3.5.3 F CobB/CobQ-like glutamine amidotransferase domain
COODHJFA_00861 3.3e-138 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
COODHJFA_00862 2.2e-222 purT 2.1.2.2 F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
COODHJFA_00863 2.1e-230 mtnE 2.6.1.83 E Aminotransferase class I and II
COODHJFA_00864 5.2e-220 M Glycosyl transferase 4-like domain
COODHJFA_00865 4.2e-197 ltaE 4.1.2.48 E Beta-eliminating lyase
COODHJFA_00867 6.6e-111 yocS S SBF-like CPA transporter family (DUF4137)
COODHJFA_00868 9.3e-62 rpsL J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
COODHJFA_00869 3.3e-80 rpsG J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
COODHJFA_00870 0.0 fusA J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
COODHJFA_00871 6.2e-232 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
COODHJFA_00872 3.4e-80 tmp1 S Domain of unknown function (DUF4391)
COODHJFA_00873 1.3e-35 tmp1 S Domain of unknown function (DUF4391)
COODHJFA_00874 7.1e-147 rlrG K Bacterial regulatory helix-turn-helix protein, lysR family
COODHJFA_00875 2.7e-186 MA20_14895 S Conserved hypothetical protein 698
COODHJFA_00876 8.2e-21 S Psort location CytoplasmicMembrane, score
COODHJFA_00877 1.2e-28 S polysaccharide biosynthetic process
COODHJFA_00878 1.3e-60 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
COODHJFA_00879 1.7e-85 D Important for reducing fluoride concentration in the cell, thus reducing its toxicity
COODHJFA_00880 6.4e-67 K MerR family regulatory protein
COODHJFA_00881 5.6e-197 1.1.1.1, 1.1.1.14 C Zinc-binding dehydrogenase
COODHJFA_00882 8.8e-259 S Domain of unknown function (DUF4143)
COODHJFA_00883 3.4e-109 P Protein of unknown function DUF47
COODHJFA_00884 6.4e-170 ugpQ 3.1.4.46 C Domain of unknown function
COODHJFA_00885 2.6e-239 ugpB G Bacterial extracellular solute-binding protein
COODHJFA_00886 4e-142 ugpE G Binding-protein-dependent transport system inner membrane component
COODHJFA_00887 3.5e-164 ugpA P Binding-protein-dependent transport system inner membrane component
COODHJFA_00888 1.5e-140 P Phosphate transporter family
COODHJFA_00889 1.3e-190 K helix_turn _helix lactose operon repressor
COODHJFA_00890 1.5e-144 K LysR substrate binding domain
COODHJFA_00891 1.7e-101 K LysR substrate binding domain
COODHJFA_00892 0.0 uvrA3 L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
COODHJFA_00893 3.1e-240 vbsD V MatE
COODHJFA_00894 9.2e-124 magIII L endonuclease III
COODHJFA_00895 9.7e-110 maa 2.3.1.18, 2.3.1.79 S Maltose acetyltransferase
COODHJFA_00896 1.3e-41 lacA 2.3.1.18, 2.3.1.79 S Maltose acetyltransferase
COODHJFA_00897 1.1e-184 S Membrane transport protein
COODHJFA_00898 1.4e-128 4.1.1.44 S Carboxymuconolactone decarboxylase family
COODHJFA_00899 4.5e-73 4.1.1.44 S Cupin domain
COODHJFA_00900 1.5e-156 hbd2 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
COODHJFA_00901 1e-134 tam 2.1.1.144, 2.1.1.197 S Methyltransferase domain
COODHJFA_00902 1.3e-49 tnp3512a L Transposase
COODHJFA_00903 8.8e-16
COODHJFA_00904 7.1e-53
COODHJFA_00905 4.5e-81 M L,D-transpeptidase catalytic domain
COODHJFA_00906 4.5e-130 ybbM V Uncharacterised protein family (UPF0014)
COODHJFA_00907 4.2e-127 ybbL V ATPases associated with a variety of cellular activities
COODHJFA_00908 3.9e-104 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
COODHJFA_00909 1.1e-92 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
COODHJFA_00910 2e-241 carA 6.3.5.5 F Belongs to the CarA family
COODHJFA_00911 0.0 carB 6.3.5.5 EF Carbamoyl-phosphate synthetase large chain, oligomerisation domain
COODHJFA_00912 6.7e-170 pyrF 2.4.2.10, 4.1.1.23 F Essential for recycling GMP and indirectly, cGMP
COODHJFA_00913 3.2e-104 gmk 2.7.4.8, 4.1.1.23 F Essential for recycling GMP and indirectly, cGMP
COODHJFA_00914 8.3e-136 dnaQ 2.7.7.7 L Exonuclease, DNA polymerase III, epsilon subunit family
COODHJFA_00916 0.0 tetP J Elongation factor G, domain IV
COODHJFA_00917 1.9e-126 ypfH S Phospholipase/Carboxylesterase
COODHJFA_00918 4e-234 metC 2.5.1.48, 4.4.1.8 E Cys/Met metabolism PLP-dependent enzyme
COODHJFA_00919 2.5e-42 XAC3035 O Glutaredoxin
COODHJFA_00920 4.6e-176 S Domain of unknown function (DUF4143)
COODHJFA_00921 2.7e-08 2.5.1.49 E Cys/Met metabolism PLP-dependent enzyme
COODHJFA_00922 7.2e-116 XK27_08050 O prohibitin homologues
COODHJFA_00923 1.1e-58 S Domain of unknown function (DUF4143)
COODHJFA_00924 1.2e-157 S Patatin-like phospholipase
COODHJFA_00925 5.7e-149 murI 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
COODHJFA_00926 2.7e-171 dapF 5.1.1.7 E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine
COODHJFA_00927 3.2e-127 S Vitamin K epoxide reductase
COODHJFA_00928 4.2e-169 PPA1328 3.1.3.97 S DNA polymerase alpha chain like domain
COODHJFA_00929 7.2e-33 S Protein of unknown function (DUF3107)
COODHJFA_00930 1.3e-301 mphA S Aminoglycoside phosphotransferase
COODHJFA_00931 8.9e-292 uvrD2 3.6.4.12 L DNA helicase
COODHJFA_00932 1.9e-295 S Zincin-like metallopeptidase
COODHJFA_00933 1.5e-156 lon T Belongs to the peptidase S16 family
COODHJFA_00934 1.6e-73 S Protein of unknown function (DUF3052)
COODHJFA_00936 1.7e-208 2.7.11.1 NU Tfp pilus assembly protein FimV
COODHJFA_00937 2.9e-221 dxr 1.1.1.267 I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)
COODHJFA_00938 5.3e-231 ispG 1.17.7.1, 1.17.7.3 I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
COODHJFA_00939 0.0 I acetylesterase activity
COODHJFA_00940 4.5e-129 recO L Involved in DNA repair and RecF pathway recombination
COODHJFA_00941 3.1e-155 uppS 2.5.1.31, 2.5.1.86, 2.5.1.88 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
COODHJFA_00942 2.3e-134 ytlD1 2.7.1.50 P Binding-protein-dependent transport system inner membrane component
COODHJFA_00943 1.5e-189 P NMT1/THI5 like
COODHJFA_00944 9.6e-225 E Aminotransferase class I and II
COODHJFA_00945 3.9e-142 bioM P ATPases associated with a variety of cellular activities
COODHJFA_00947 0.0 M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
COODHJFA_00948 0.0 S Tetratricopeptide repeat
COODHJFA_00949 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
COODHJFA_00950 3.9e-204 mrp D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP
COODHJFA_00951 2.3e-281 glnA 6.3.1.2 E glutamine synthetase
COODHJFA_00952 9.2e-144 S Domain of unknown function (DUF4191)
COODHJFA_00953 9.3e-278 lpdA 1.16.1.1, 1.8.1.4 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
COODHJFA_00954 6.9e-102 S Protein of unknown function (DUF3043)
COODHJFA_00955 2.1e-260 argE E Peptidase dimerisation domain
COODHJFA_00956 6.2e-108 ykoE S ABC-type cobalt transport system, permease component
COODHJFA_00957 6.5e-276 ykoD P ATPases associated with a variety of cellular activities
COODHJFA_00958 2.1e-163 cbiQ P Cobalt transport protein
COODHJFA_00959 6e-160 IV02_28330 2.1.1.185, 2.1.1.34 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
COODHJFA_00960 7.7e-202 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
COODHJFA_00961 0.0 pheT 6.1.1.20 J Phenylalanyl-tRNA synthetase beta
COODHJFA_00962 1.9e-89
COODHJFA_00963 9.4e-203 argC 1.2.1.38 E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
COODHJFA_00964 2.4e-212 argJ 2.3.1.1, 2.3.1.35, 2.7.2.8 E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
COODHJFA_00965 2.2e-179 argB 2.7.2.8 E Belongs to the acetylglutamate kinase family. ArgB subfamily
COODHJFA_00966 3.2e-250 argD 2.6.1.11, 2.6.1.17 E Aminotransferase class-III
COODHJFA_00967 3.9e-184 argF 2.1.3.3 E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
COODHJFA_00968 5.9e-83 argR K Regulates arginine biosynthesis genes
COODHJFA_00969 1.2e-238 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
COODHJFA_00970 2.7e-56 L PFAM Integrase catalytic
COODHJFA_00971 7.4e-30 L PFAM Integrase catalytic
COODHJFA_00972 8.5e-44 yoeB S YoeB-like toxin of bacterial type II toxin-antitoxin system
COODHJFA_00973 2.4e-32 relB L RelB antitoxin
COODHJFA_00974 4.4e-280 argH 4.3.2.1 E argininosuccinate lyase
COODHJFA_00975 1.2e-28 thiS 2.8.1.10 H ThiS family
COODHJFA_00976 3.6e-157 thiG 2.8.1.10 H Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
COODHJFA_00977 6e-146 moeB 2.7.7.80 H ThiF family
COODHJFA_00978 3.1e-71 M1-798 P Rhodanese Homology Domain
COODHJFA_00979 4.6e-102 6.1.1.14 S Metal dependent phosphohydrolases with conserved 'HD' motif.
COODHJFA_00980 7.4e-138 S Putative ABC-transporter type IV
COODHJFA_00981 9.1e-82 S Protein of unknown function (DUF975)
COODHJFA_00982 2.2e-254 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
COODHJFA_00983 1.9e-171 L Tetratricopeptide repeat
COODHJFA_00984 5.1e-198 yutF 3.1.3.41 G Haloacid dehalogenase-like hydrolase
COODHJFA_00986 6.7e-139 tlyA 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
COODHJFA_00987 2.9e-93
COODHJFA_00988 1.3e-49 trkA P TrkA-N domain
COODHJFA_00989 1.9e-41 trkB P Cation transport protein
COODHJFA_00990 1.9e-183 nadK 2.7.1.23 H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
COODHJFA_00991 0.0 recN L May be involved in recombinational repair of damaged DNA
COODHJFA_00992 7.2e-118 S Haloacid dehalogenase-like hydrolase
COODHJFA_00993 4.8e-56 J Acetyltransferase (GNAT) domain
COODHJFA_00994 4.8e-58 K helix_turn_helix gluconate operon transcriptional repressor
COODHJFA_00995 8.5e-173 V ATPases associated with a variety of cellular activities
COODHJFA_00996 2.9e-120 S ABC-2 family transporter protein
COODHJFA_00997 3.7e-107
COODHJFA_00998 2.2e-09 S Psort location Cytoplasmic, score
COODHJFA_00999 2.1e-282 thrC 4.2.3.1 E Threonine synthase N terminus
COODHJFA_01000 3.1e-237 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
COODHJFA_01001 3e-96
COODHJFA_01002 9.2e-138 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
COODHJFA_01003 9.7e-92 ybbD 3.2.1.52 G Glycosyl hydrolase family 3 N-terminal domain protein
COODHJFA_01004 3.8e-22 ybbD 3.2.1.52 G Glycosyl hydrolase family 3 N-terminal domain protein
COODHJFA_01005 0.0 S Uncharacterised protein family (UPF0182)
COODHJFA_01006 1.6e-92 2.3.1.183 M Acetyltransferase (GNAT) domain
COODHJFA_01007 1.5e-114 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
COODHJFA_01008 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
COODHJFA_01009 2.7e-179 1.1.1.65 C Aldo/keto reductase family
COODHJFA_01010 1.5e-244 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
COODHJFA_01011 9.5e-69 divIC D Septum formation initiator
COODHJFA_01012 8.2e-102 ppx2 3.6.1.11, 3.6.1.40 S Protein of unknown function (DUF501)
COODHJFA_01013 1.4e-181 ppx 3.6.1.11, 3.6.1.40 FP Ppx/GppA phosphatase family
COODHJFA_01015 8.3e-94
COODHJFA_01016 1.2e-282 sdaA 4.3.1.17 E Serine dehydratase alpha chain
COODHJFA_01017 1.4e-74 fkbP 5.2.1.8 G Peptidyl-prolyl cis-trans
COODHJFA_01018 9.8e-80 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
COODHJFA_01019 4.8e-147 yplQ S Haemolysin-III related
COODHJFA_01020 9.2e-278 pdtaS 2.7.13.3 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
COODHJFA_01021 4.9e-47 whiB K Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
COODHJFA_01022 0.0 D FtsK/SpoIIIE family
COODHJFA_01023 3.8e-206 K Cell envelope-related transcriptional attenuator domain
COODHJFA_01024 1.8e-55 whiB K Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
COODHJFA_01025 0.0 S Glycosyl transferase, family 2
COODHJFA_01026 1.6e-261
COODHJFA_01027 6.3e-78 MA20_43655 2.7.2.8 S Zincin-like metallopeptidase
COODHJFA_01028 7e-147 cof 5.2.1.8 T Eukaryotic phosphomannomutase
COODHJFA_01029 1.4e-121 ctsW S Phosphoribosyl transferase domain
COODHJFA_01030 4.9e-196 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
COODHJFA_01031 2.9e-128 T Response regulator receiver domain protein
COODHJFA_01032 0.0 glgB 2.4.1.18 CBM48,GH13 G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
COODHJFA_01033 2.1e-100 carD K CarD-like/TRCF domain
COODHJFA_01034 6.2e-88 ispF 2.1.1.228, 2.7.7.60, 4.6.1.12 H Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)
COODHJFA_01035 7.5e-136 znuB U ABC 3 transport family
COODHJFA_01036 3.8e-162 znuC P ATPases associated with a variety of cellular activities
COODHJFA_01037 4.4e-182 P Zinc-uptake complex component A periplasmic
COODHJFA_01038 1.5e-163 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
COODHJFA_01039 3.2e-254 rpsA J Ribosomal protein S1
COODHJFA_01040 1.6e-115 coaE 2.7.1.24 H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
COODHJFA_01041 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
COODHJFA_01042 2.1e-177 terC P Integral membrane protein, TerC family
COODHJFA_01043 2.7e-274 pyk 2.7.1.40 G Pyruvate kinase
COODHJFA_01044 1.1e-109 aspA 3.6.1.13 L NUDIX domain
COODHJFA_01046 2.8e-124 pdtaR T Response regulator receiver domain protein
COODHJFA_01047 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
COODHJFA_01048 5.1e-178 yqfO 3.5.4.16 L NIF3 (NGG1p interacting factor 3)
COODHJFA_01049 1.2e-126 3.6.1.13 L NUDIX domain
COODHJFA_01050 0.0 glgX 3.2.1.68 CBM48,GH13 G Belongs to the glycosyl hydrolase 13 family
COODHJFA_01051 3.8e-25 zntR K bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
COODHJFA_01052 1.1e-89 K Putative zinc ribbon domain
COODHJFA_01053 2.1e-125 S GyrI-like small molecule binding domain
COODHJFA_01054 2.1e-20 tag 3.2.2.20 L Methyladenine glycosylase
COODHJFA_01056 1.3e-122
COODHJFA_01057 1.7e-213 ykiI
COODHJFA_01058 3.5e-252 aroA 2.5.1.19 E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
COODHJFA_01059 1.7e-232 ackA 2.7.2.1, 2.7.2.15 H Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
COODHJFA_01060 0.0 pta 1.1.1.40, 2.3.1.19, 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
COODHJFA_01062 4.1e-192 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
COODHJFA_01063 0.0 XK27_09800 I Psort location CytoplasmicMembrane, score 9.99
COODHJFA_01064 2.6e-33
COODHJFA_01066 4.7e-25 KL Type III restriction enzyme res subunit
COODHJFA_01067 0.0 KL Type III restriction enzyme res subunit
COODHJFA_01068 1.5e-18
COODHJFA_01069 5.7e-38 L Psort location Cytoplasmic, score 8.87
COODHJFA_01070 5.3e-37 L Integrase core domain
COODHJFA_01071 5.1e-79 L IstB-like ATP binding protein
COODHJFA_01072 2.2e-284 L PFAM Integrase catalytic
COODHJFA_01073 5.4e-97
COODHJFA_01074 2.9e-101
COODHJFA_01075 9.6e-95
COODHJFA_01076 1.1e-82 U Relaxase/Mobilisation nuclease domain
COODHJFA_01077 1.1e-63 K Helix-turn-helix XRE-family like proteins
COODHJFA_01078 1.3e-301 guaA 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
COODHJFA_01079 0.0 xfp 4.1.2.22, 4.1.2.9 G D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
COODHJFA_01080 3e-262 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
COODHJFA_01081 2.5e-65 rsfS 2.7.7.18 J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
COODHJFA_01082 2.7e-134 3.1.3.85 G Phosphoglycerate mutase family
COODHJFA_01085 1.3e-154 S Sucrose-6F-phosphate phosphohydrolase
COODHJFA_01086 1.8e-176 metQ P NLPA lipoprotein
COODHJFA_01087 1.4e-220 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
COODHJFA_01088 9.6e-113 metI P Binding-protein-dependent transport system inner membrane component
COODHJFA_01089 3.7e-226 S Peptidase dimerisation domain
COODHJFA_01090 0.0 nadE 6.3.1.5, 6.3.5.1 H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
COODHJFA_01091 2.6e-38
COODHJFA_01092 0.0 pflB 2.3.1.54 C Pyruvate formate lyase-like
COODHJFA_01093 8.7e-175 pflA 1.97.1.4 C Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
COODHJFA_01094 3.7e-119 S Protein of unknown function (DUF3000)
COODHJFA_01095 2.6e-252 rnd 3.1.13.5 J 3'-5' exonuclease
COODHJFA_01096 4.4e-234 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
COODHJFA_01097 6.3e-244 clcA_2 P Voltage gated chloride channel
COODHJFA_01098 2e-59
COODHJFA_01099 6.5e-116 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
COODHJFA_01100 7.3e-121 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
COODHJFA_01101 3.3e-250 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
COODHJFA_01104 1.3e-242 patB 4.4.1.8 E Aminotransferase, class I II
COODHJFA_01105 1.1e-237 nhaA P Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
COODHJFA_01106 1.6e-168 fmt2 3.2.2.10 S Belongs to the LOG family
COODHJFA_01107 1.9e-113 safC S O-methyltransferase
COODHJFA_01108 4.2e-183 sdhB 1.3.5.1, 1.3.5.4 C 4Fe-4S dicluster domain
COODHJFA_01109 0.0 sdhA 1.3.5.1, 1.3.5.4 C Succinate dehydrogenase flavoprotein subunit
COODHJFA_01110 0.0 dprA 5.99.1.2 LU DNA recombination-mediator protein A
COODHJFA_01111 6.8e-292 comM O Magnesium chelatase, subunit ChlI C-terminal
COODHJFA_01112 2.2e-75 yraN L Belongs to the UPF0102 family
COODHJFA_01113 1.6e-23 L Transposase and inactivated derivatives IS30 family
COODHJFA_01114 2.8e-165 pdxK 2.7.1.35 H Phosphomethylpyrimidine kinase
COODHJFA_01115 1.7e-251 metY 2.5.1.49 E Aminotransferase class-V
COODHJFA_01116 1.7e-165 V ABC transporter, ATP-binding protein
COODHJFA_01117 0.0 MV MacB-like periplasmic core domain
COODHJFA_01118 3.2e-139 K helix_turn_helix, Lux Regulon
COODHJFA_01119 0.0 tcsS2 T Histidine kinase
COODHJFA_01120 4.1e-294 pip 3.4.11.5 S alpha/beta hydrolase fold
COODHJFA_01121 1.4e-147 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
COODHJFA_01122 8.1e-154 cjaA ET Bacterial periplasmic substrate-binding proteins
COODHJFA_01123 2.6e-138 glnQ 3.6.3.21 E ATP binding protein of ABC transporter for glutamate aspartate K02028
COODHJFA_01124 1.2e-118 E Binding-protein-dependent transport system inner membrane component
COODHJFA_01125 6.7e-111 papP E Binding-protein-dependent transport system inner membrane component
COODHJFA_01126 2.4e-202 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
COODHJFA_01127 1.4e-164 K Arac family
COODHJFA_01128 2.7e-28 S rRNA binding
COODHJFA_01130 2.7e-247 V MatE
COODHJFA_01131 0.0 drrC L ABC transporter
COODHJFA_01132 1.6e-14 2.7.7.7 L Transposase, Mutator family
COODHJFA_01133 4.1e-234 XK27_00240 K Fic/DOC family
COODHJFA_01134 9.1e-60 yccF S Inner membrane component domain
COODHJFA_01135 1.3e-159 ksgA 2.1.1.182 J Methyltransferase domain
COODHJFA_01136 2.5e-67 S Cupin 2, conserved barrel domain protein
COODHJFA_01137 1.5e-52 T PemK-like, MazF-like toxin of type II toxin-antitoxin system
COODHJFA_01138 1.1e-37 L RelB antitoxin
COODHJFA_01139 3.3e-244 S HipA-like C-terminal domain
COODHJFA_01140 1.1e-32 K addiction module antidote protein HigA
COODHJFA_01141 8.9e-221 G Transmembrane secretion effector
COODHJFA_01142 3.5e-118 K Bacterial regulatory proteins, tetR family
COODHJFA_01143 2.2e-11
COODHJFA_01144 0.0 cysB 4.2.1.22 EGP Major facilitator Superfamily
COODHJFA_01145 1.2e-13 EGP Transmembrane secretion effector
COODHJFA_01146 2e-238 yihS 5.1.3.11 G N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
COODHJFA_01147 3.3e-255 S Metal-independent alpha-mannosidase (GH125)
COODHJFA_01149 8.5e-32
COODHJFA_01150 2.1e-131 C Putative TM nitroreductase
COODHJFA_01151 1.8e-170 EG EamA-like transporter family
COODHJFA_01152 2e-70 pdxH S Pfam:Pyridox_oxidase
COODHJFA_01153 2.7e-233 L ribosomal rna small subunit methyltransferase
COODHJFA_01154 5.4e-166 3.1.3.85, 5.4.2.11, 5.4.2.12 G Phosphoglycerate mutase family
COODHJFA_01155 5.3e-170 corA P CorA-like Mg2+ transporter protein
COODHJFA_01156 1.6e-160 ET Bacterial periplasmic substrate-binding proteins
COODHJFA_01157 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
COODHJFA_01158 1.6e-44 comEA 2.4.1.21 GT5 L Helix-hairpin-helix motif
COODHJFA_01159 9.8e-308 comE S Competence protein
COODHJFA_01160 9e-173 holA 2.7.7.7 L DNA polymerase III delta subunit
COODHJFA_01161 3.4e-87 ydiB 2.7.1.221, 5.1.1.1 S Threonylcarbamoyl adenosine biosynthesis protein TsaE
COODHJFA_01162 1e-159 yeaZ 2.3.1.234 O Glycoprotease family
COODHJFA_01163 3.8e-105 rimI 2.3.1.128, 2.3.1.234 K FR47-like protein
COODHJFA_01164 1.2e-194 tsaD 2.3.1.234 O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
COODHJFA_01166 3.6e-120 K helix_turn_helix, Lux Regulon
COODHJFA_01167 3.3e-239 T Histidine kinase
COODHJFA_01169 6.7e-60
COODHJFA_01170 8.9e-140
COODHJFA_01171 1.9e-142 S ABC-2 family transporter protein
COODHJFA_01172 7.4e-200 V AAA domain, putative AbiEii toxin, Type IV TA system
COODHJFA_01173 1.7e-56 L PFAM Relaxase mobilization nuclease family protein
COODHJFA_01174 3.7e-145 S Fic/DOC family
COODHJFA_01175 3.4e-20 2.7.11.1 S HipA-like C-terminal domain
COODHJFA_01176 5.4e-34 xerH L Phage integrase family
COODHJFA_01178 4e-86 M Peptidase family M23
COODHJFA_01179 2e-257 G ABC transporter substrate-binding protein
COODHJFA_01180 2.3e-242 icd 1.1.1.42 C Belongs to the isocitrate and isopropylmalate dehydrogenases family
COODHJFA_01181 1.5e-208 guaB 1.1.1.205 F IMP dehydrogenase family protein
COODHJFA_01182 3.3e-91
COODHJFA_01183 0.0 fadD3 6.2.1.3 I long-chain-fatty acid CoA ligase
COODHJFA_01184 2.2e-87 def 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
COODHJFA_01185 5.8e-144 rpsB J Belongs to the universal ribosomal protein uS2 family
COODHJFA_01186 3.1e-145 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
COODHJFA_01187 2.8e-134 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
COODHJFA_01188 2.6e-92 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
COODHJFA_01189 3.7e-174 cdsA 2.7.7.41, 2.7.7.67 I Cytidylyltransferase family
COODHJFA_01190 2.7e-224 rlmN 2.1.1.192 J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
COODHJFA_01191 3.6e-76 3.5.1.124 S DJ-1/PfpI family
COODHJFA_01192 6.1e-140 hisF 4.1.3.27 E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
COODHJFA_01193 5.3e-71 hisI 3.5.4.19, 3.6.1.31 E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
COODHJFA_01194 5.4e-297 trpE 4.1.3.27 E Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
COODHJFA_01195 2.2e-92 yijF S Domain of unknown function (DUF1287)
COODHJFA_01196 5e-174 3.6.4.12
COODHJFA_01197 1.3e-75
COODHJFA_01198 1e-62 yeaO K Protein of unknown function, DUF488
COODHJFA_01200 1.4e-295 mmuP E amino acid
COODHJFA_01201 6.3e-20 G Major facilitator Superfamily
COODHJFA_01202 4.4e-42 2.6.1.76 EGP Major Facilitator Superfamily
COODHJFA_01203 8.3e-34 hipA 2.7.11.1 S kinase activity
COODHJFA_01204 3.7e-45 K sequence-specific DNA binding
COODHJFA_01205 3.2e-110
COODHJFA_01206 5.5e-71 K Transcriptional regulator
COODHJFA_01207 1.3e-52
COODHJFA_01208 7.4e-49 S Protein of unknown function (DUF2089)
COODHJFA_01210 2.3e-162 V ABC transporter
COODHJFA_01211 3.2e-251 V Efflux ABC transporter, permease protein
COODHJFA_01212 2.8e-224 T Histidine kinase
COODHJFA_01213 8.8e-119 K Bacterial regulatory proteins, luxR family
COODHJFA_01214 7.2e-89 L Transposase and inactivated derivatives IS30 family
COODHJFA_01215 2e-109 L Transposase and inactivated derivatives IS30 family
COODHJFA_01216 4.1e-121 V ATPases associated with a variety of cellular activities
COODHJFA_01217 5e-128
COODHJFA_01218 1.4e-99
COODHJFA_01219 4.5e-147 S EamA-like transporter family
COODHJFA_01220 9.1e-62
COODHJFA_01221 2e-70
COODHJFA_01222 3.8e-162 yfiL V ATPases associated with a variety of cellular activities
COODHJFA_01223 3.6e-132
COODHJFA_01224 2.1e-106
COODHJFA_01225 9.4e-22 S Psort location CytoplasmicMembrane, score
COODHJFA_01226 2.3e-93 rpoE4 K Sigma-70 region 2
COODHJFA_01227 3.2e-49 S Bacterial toxin of type II toxin-antitoxin system, YafQ
COODHJFA_01228 3.2e-40 relB L RelB antitoxin
COODHJFA_01229 2.7e-176 V MacB-like periplasmic core domain
COODHJFA_01230 1.4e-124 lolD Q ATPases associated with a variety of cellular activities
COODHJFA_01231 1.4e-143 M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
COODHJFA_01232 3e-95
COODHJFA_01233 5.3e-127 K helix_turn_helix, Lux Regulon
COODHJFA_01234 1.1e-193 2.7.13.3 T Histidine kinase
COODHJFA_01235 2e-35 2.7.13.3 T Histidine kinase
COODHJFA_01238 5.2e-121
COODHJFA_01239 1.5e-50
COODHJFA_01240 3.3e-100 S Acetyltransferase (GNAT) domain
COODHJFA_01241 1.6e-66 cefD 5.1.1.17 E Aminotransferase, class V
COODHJFA_01242 6e-188 V VanZ like family
COODHJFA_01243 1.8e-259 mmuP E amino acid
COODHJFA_01244 1.4e-156 nfo 3.1.21.2 L Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
COODHJFA_01245 1.6e-131 S SOS response associated peptidase (SRAP)
COODHJFA_01246 0.0 trpB 4.1.1.48, 4.2.1.20 E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
COODHJFA_01247 3.2e-161 trpA 4.2.1.20 E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
COODHJFA_01248 9.1e-186 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
COODHJFA_01249 7.9e-112 rpe 5.1.3.1 G Ribulose-phosphate 3-epimerase
COODHJFA_01250 9.9e-42 hisE 3.5.4.19, 3.6.1.31, 5.3.1.16 E Phosphoribosyl-ATP pyrophosphohydrolase
COODHJFA_01251 8.7e-156 hisG 2.4.2.17 F ATP phosphoribosyltransferase
COODHJFA_01252 3e-105 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
COODHJFA_01253 1.7e-171 S Bacterial protein of unknown function (DUF881)
COODHJFA_01254 3.9e-35 sbp S Protein of unknown function (DUF1290)
COODHJFA_01255 5.9e-141 S Bacterial protein of unknown function (DUF881)
COODHJFA_01256 6.7e-75 garA T Inner membrane component of T3SS, cytoplasmic domain
COODHJFA_01257 2.6e-112 K helix_turn_helix, mercury resistance
COODHJFA_01258 2.4e-63
COODHJFA_01259 2e-35
COODHJFA_01260 5.7e-140 pgp 3.1.3.18 S HAD-hyrolase-like
COODHJFA_01261 5.1e-62 rbpA K Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters
COODHJFA_01262 0.0 helY L DEAD DEAH box helicase
COODHJFA_01263 6.8e-53
COODHJFA_01264 0.0 pafB K WYL domain
COODHJFA_01265 2.5e-291 ugpA 2.7.7.9 G UTP-glucose-1-phosphate uridylyltransferase
COODHJFA_01266 2.5e-163 supH S Sucrose-6F-phosphate phosphohydrolase
COODHJFA_01268 0.0 der 1.1.1.399, 1.1.1.95, 2.7.4.25 F GTPase that plays an essential role in the late steps of ribosome biogenesis
COODHJFA_01269 1.2e-143 rluB 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
COODHJFA_01270 2.9e-120 glpF U Belongs to the MIP aquaporin (TC 1.A.8) family
COODHJFA_01271 1.3e-32
COODHJFA_01272 0.0 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
COODHJFA_01273 2.1e-233
COODHJFA_01274 9.3e-164 sucD 6.2.1.5 C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
COODHJFA_01275 1.2e-222 sucC 6.2.1.5 F Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
COODHJFA_01276 1e-99 apt 2.4.2.22, 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
COODHJFA_01277 3.6e-52 yajC U Preprotein translocase subunit
COODHJFA_01278 4.7e-199 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
COODHJFA_01279 3e-105 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
COODHJFA_01280 2.7e-100 ruvC 3.1.22.4 L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
COODHJFA_01281 2e-111 yebC K transcriptional regulatory protein
COODHJFA_01282 6.9e-112 hit 2.7.7.53 FG HIT domain
COODHJFA_01283 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
COODHJFA_01289 1.2e-133 S PAC2 family
COODHJFA_01290 1.8e-156 uppP 3.6.1.27 V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
COODHJFA_01291 9.6e-157 G Fructosamine kinase
COODHJFA_01292 6.8e-212 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COODHJFA_01293 3.7e-191 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
COODHJFA_01294 0.0 tkt 2.2.1.1 H Belongs to the transketolase family
COODHJFA_01295 3.6e-202 tal 2.2.1.2 H Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
COODHJFA_01296 1.4e-240 brnQ U Component of the transport system for branched-chain amino acids
COODHJFA_01297 5.8e-190
COODHJFA_01298 4e-300 alaA 2.6.1.2, 2.6.1.66 E Aminotransferase, class I II
COODHJFA_01299 2.9e-159 S Sucrose-6F-phosphate phosphohydrolase
COODHJFA_01300 8.5e-176 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
COODHJFA_01301 2.5e-34 secG U Preprotein translocase SecG subunit
COODHJFA_01302 3.5e-146 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
COODHJFA_01303 5.8e-222 pgk 2.7.2.3, 5.3.1.1 F Phosphoglycerate kinase
COODHJFA_01304 3.5e-169 whiA K May be required for sporulation
COODHJFA_01305 8.3e-179 rapZ S Displays ATPase and GTPase activities
COODHJFA_01306 3.7e-190 aroE 1.1.1.25 E Shikimate dehydrogenase substrate binding domain
COODHJFA_01307 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
COODHJFA_01308 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
COODHJFA_01309 5e-234 yhdR 2.6.1.1 E Psort location Cytoplasmic, score 8.87
COODHJFA_01310 5.3e-91 XK27_08585 S Hypothetical bacterial integral membrane protein (Trep_Strep)
COODHJFA_01311 1.4e-26 P ABC transporter
COODHJFA_01312 8.3e-24 P ABC transporter
COODHJFA_01313 5.2e-56 P ABC transporter
COODHJFA_01314 1.4e-130 S Enoyl-(Acyl carrier protein) reductase
COODHJFA_01315 3.7e-301 ybiT S ABC transporter
COODHJFA_01316 0.0 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
COODHJFA_01317 9.4e-123 3.8.1.2 S Haloacid dehalogenase-like hydrolase
COODHJFA_01318 9.4e-172 cpsY K Bacterial regulatory helix-turn-helix protein, lysR family
COODHJFA_01319 7.3e-219 MA20_36090 S Psort location Cytoplasmic, score 8.87
COODHJFA_01320 3.4e-28
COODHJFA_01321 5e-125 pyrE 2.4.2.10 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
COODHJFA_01322 3.3e-183 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
COODHJFA_01323 4.9e-159 pyrK 1.18.1.2, 1.19.1.1, 1.4.1.13, 1.4.1.14 C Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
COODHJFA_01324 1.5e-175 pyrF 2.4.2.10, 4.1.1.23 F Belongs to the OMP decarboxylase family. Type 2 subfamily
COODHJFA_01325 3.3e-291 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
COODHJFA_01326 7e-74 pyrI 2.1.3.2 F Aspartate carbamoyltransferase regulatory chain, allosteric domain protein
COODHJFA_01327 8.3e-179 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
COODHJFA_01328 0.0 glnE 2.7.7.42, 2.7.7.89 H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell
COODHJFA_01329 1.7e-187 cbh 3.5.1.24 M Linear amide C-N hydrolase, choloylglycine hydrolase family protein
COODHJFA_01330 2.8e-162 metF 1.5.1.20 E Methylenetetrahydrofolate reductase
COODHJFA_01331 0.0 metE 2.1.1.14 E Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
COODHJFA_01333 1.3e-99 sixA 3.6.1.55 T Phosphoglycerate mutase family
COODHJFA_01334 7.8e-202 trmI 2.1.1.219, 2.1.1.220 J Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
COODHJFA_01335 1.5e-132 S Phospholipase/Carboxylesterase
COODHJFA_01337 2e-140 tenA 3.5.99.2 K Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
COODHJFA_01338 6.5e-147 S phosphoesterase or phosphohydrolase
COODHJFA_01339 5e-90 S Appr-1'-p processing enzyme
COODHJFA_01340 1.5e-177 I alpha/beta hydrolase fold
COODHJFA_01341 2e-42 L Transposase, Mutator family
COODHJFA_01342 3.2e-139
COODHJFA_01343 6.3e-91 bcp 1.11.1.15 O Redoxin
COODHJFA_01344 9.3e-158 S Sucrose-6F-phosphate phosphohydrolase
COODHJFA_01345 1.2e-157 modF 3.6.3.21, 3.6.3.34 P ATPases associated with a variety of cellular activities
COODHJFA_01346 3.3e-244 glgA 2.4.1.342 GT4 G Starch synthase catalytic domain
COODHJFA_01347 1.6e-79
COODHJFA_01348 0.0 S Glycosyl hydrolases related to GH101 family, GH129
COODHJFA_01349 0.0 E ABC transporter, substrate-binding protein, family 5
COODHJFA_01350 1.2e-299 gltD 1.4.1.13, 1.4.1.14 C Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
COODHJFA_01351 0.0 gltB 1.4.1.13, 1.4.1.14, 1.4.7.1 E glutamate synthase NADPH large subunit
COODHJFA_01352 9e-64 K helix_turn _helix lactose operon repressor
COODHJFA_01353 1e-190 K helix_turn _helix lactose operon repressor
COODHJFA_01355 7.4e-255 hemN H Involved in the biosynthesis of porphyrin-containing compound
COODHJFA_01356 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
COODHJFA_01357 5.8e-34 rpsT J Binds directly to 16S ribosomal RNA
COODHJFA_01358 8.8e-139 S UPF0126 domain
COODHJFA_01359 8.8e-143 mazG 3.6.1.66 S Psort location Cytoplasmic, score 8.87
COODHJFA_01360 1.6e-226 ilvE 2.6.1.42 E Amino-transferase class IV
COODHJFA_01361 1.7e-103 ctc J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
COODHJFA_01362 5.4e-234 yhjX EGP Major facilitator Superfamily
COODHJFA_01363 1.5e-232 pntB 1.6.1.2 C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
COODHJFA_01364 2.1e-43 pntAA 1.6.1.2 C 4TM region of pyridine nucleotide transhydrogenase, mitoch
COODHJFA_01365 4e-204 pntA 1.6.1.2 C NAD(P) transhydrogenase subunit alpha part 1 K00324
COODHJFA_01366 0.0 fadD 6.2.1.3 I AMP-binding enzyme
COODHJFA_01367 4.3e-186 era S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
COODHJFA_01368 5.6e-248 corC S CBS domain
COODHJFA_01369 4.7e-102 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
COODHJFA_01370 2.5e-217 phoH T PhoH-like protein
COODHJFA_01371 4.4e-58 hinT 2.1.1.226, 2.1.1.227 FG Scavenger mRNA decapping enzyme C-term binding
COODHJFA_01372 3e-134 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
COODHJFA_01374 3.3e-166 spoU 2.1.1.185 J SpoU rRNA Methylase family
COODHJFA_01375 6.2e-243 glgC 2.7.7.27 H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
COODHJFA_01376 3.2e-109 yitW S Iron-sulfur cluster assembly protein
COODHJFA_01377 8.1e-102 iscU C SUF system FeS assembly protein, NifU family
COODHJFA_01378 3.2e-239 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
COODHJFA_01379 7e-144 sufC O FeS assembly ATPase SufC
COODHJFA_01380 4.3e-236 sufD O FeS assembly protein SufD
COODHJFA_01381 1.5e-291 sufB O FeS assembly protein SufB
COODHJFA_01382 1.6e-310 S L,D-transpeptidase catalytic domain
COODHJFA_01383 0.0 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
COODHJFA_01384 7.7e-79 aroQ 4.2.1.10 E Catalyzes a trans-dehydration via an enolate intermediate
COODHJFA_01385 0.0 aroK 2.7.1.71, 4.2.3.4 H Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
COODHJFA_01386 4.3e-217 aroC 4.2.3.5 E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
COODHJFA_01387 5.3e-70 3.4.23.43 S Type IV leader peptidase family
COODHJFA_01388 1.7e-194 mltG S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
COODHJFA_01389 2.7e-71 yqgF L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
COODHJFA_01390 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
COODHJFA_01391 1.6e-35
COODHJFA_01392 2.4e-55 WQ51_05790 S Bacterial protein of unknown function (DUF948)
COODHJFA_01393 1.6e-128 pgm3 G Phosphoglycerate mutase family
COODHJFA_01394 1.2e-48 relB L RelB antitoxin
COODHJFA_01395 7.1e-67 T PemK-like, MazF-like toxin of type II toxin-antitoxin system
COODHJFA_01396 1.2e-111 E Transglutaminase-like superfamily
COODHJFA_01397 3.1e-46 sdpI S SdpI/YhfL protein family
COODHJFA_01398 2.5e-91 3.5.4.5 F cytidine deaminase activity
COODHJFA_01399 1.8e-155 S Peptidase C26
COODHJFA_01400 1.7e-108 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
COODHJFA_01401 2.5e-161 lolD V ABC transporter
COODHJFA_01402 1.3e-216 V FtsX-like permease family
COODHJFA_01403 1.4e-63 S Domain of unknown function (DUF4418)
COODHJFA_01404 0.0 pcrA 3.6.4.12 L DNA helicase
COODHJFA_01405 9.7e-106 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
COODHJFA_01406 8.8e-243 pbuX F Permease family
COODHJFA_01407 2.8e-31 yozG K Cro/C1-type HTH DNA-binding domain
COODHJFA_01408 1.1e-40 S Protein of unknown function (DUF2975)
COODHJFA_01409 4.8e-159 I Serine aminopeptidase, S33
COODHJFA_01410 2.1e-163 M pfam nlp p60
COODHJFA_01411 3.5e-106 pncA 2.7.11.1, 3.5.1.19 Q Isochorismatase family
COODHJFA_01412 3.1e-110 3.4.13.21 E Peptidase family S51
COODHJFA_01413 2.8e-195
COODHJFA_01414 1.5e-39 E GDSL-like Lipase/Acylhydrolase family
COODHJFA_01415 1.2e-285 3.6.4.12 K Putative ATP-dependent DNA helicase recG C-terminal
COODHJFA_01416 1.1e-251 V ABC-2 family transporter protein
COODHJFA_01417 2.4e-223 V ABC-2 family transporter protein
COODHJFA_01418 5e-187 V ATPases associated with a variety of cellular activities
COODHJFA_01419 4.8e-11 pacL 3.6.3.8, 3.6.3.9 P Cation transporter/ATPase, N-terminus
COODHJFA_01420 3.5e-223 T Histidine kinase
COODHJFA_01421 5.6e-110 K helix_turn_helix, Lux Regulon
COODHJFA_01422 1e-113 MA20_27875 P Protein of unknown function DUF47
COODHJFA_01423 3.1e-187 pit P Phosphate transporter family
COODHJFA_01424 2.2e-259 nplT G Alpha amylase, catalytic domain
COODHJFA_01425 3.4e-307 deaD 3.6.4.13 JKL helicase superfamily c-terminal domain
COODHJFA_01426 8.4e-235 rutG F Permease family
COODHJFA_01427 1.4e-161 3.1.3.73 G Phosphoglycerate mutase family
COODHJFA_01428 7.9e-108 3.1.3.27 E haloacid dehalogenase-like hydrolase
COODHJFA_01429 5.4e-240 EGP Major facilitator Superfamily
COODHJFA_01431 1.7e-63 MA20_22310 4.4.1.5 E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
COODHJFA_01432 8.9e-94 S Sulfite exporter TauE/SafE
COODHJFA_01433 2.9e-57 L Helix-turn-helix domain
COODHJFA_01434 3.2e-107 S Sulfite exporter TauE/SafE
COODHJFA_01435 4e-272 aslB C Iron-sulfur cluster-binding domain
COODHJFA_01436 0.0 P Domain of unknown function (DUF4976)
COODHJFA_01437 2.2e-252 gtr U Sugar (and other) transporter
COODHJFA_01438 2.2e-159 yeaD 4.2.1.9, 5.1.3.15 G Aldose 1-epimerase
COODHJFA_01439 3.1e-220 GK ROK family
COODHJFA_01440 8.7e-176 2.7.1.2 GK ROK family
COODHJFA_01441 1.9e-147 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
COODHJFA_01442 2.8e-243 nagA 3.5.1.25 G Amidohydrolase family
COODHJFA_01443 5.3e-26 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
COODHJFA_01444 1.4e-158 S Fic/DOC family
COODHJFA_01445 1.3e-251 S HipA-like C-terminal domain
COODHJFA_01447 2.3e-74
COODHJFA_01448 8.7e-259 L Phage integrase family
COODHJFA_01449 4.5e-143 fic D Fic/DOC family
COODHJFA_01450 9.5e-26
COODHJFA_01451 1.2e-52
COODHJFA_01452 2.2e-59
COODHJFA_01453 2.6e-64
COODHJFA_01456 0.0 topB 5.99.1.2 L DNA topoisomerase
COODHJFA_01457 2.7e-68
COODHJFA_01458 5.3e-31
COODHJFA_01460 2.1e-44 S Domain of unknown function (DUF4160)
COODHJFA_01461 5.5e-42 K Protein of unknown function (DUF2442)
COODHJFA_01462 1e-63 S Bacterial mobilisation protein (MobC)
COODHJFA_01463 7.4e-289 ltrBE1 U Relaxase/Mobilisation nuclease domain
COODHJFA_01464 1.7e-135 S Protein of unknown function (DUF3801)
COODHJFA_01466 6.1e-51
COODHJFA_01467 4.4e-44
COODHJFA_01468 0.0 U Type IV secretory system Conjugative DNA transfer
COODHJFA_01470 4.8e-102 dam2 2.1.1.72 L D12 class N6 adenine-specific DNA methyltransferase
COODHJFA_01471 8.6e-100 K DNA binding
COODHJFA_01472 1.9e-128
COODHJFA_01473 4.9e-96
COODHJFA_01474 1.4e-261 isp2 3.2.1.96 M CHAP domain
COODHJFA_01475 0.0 trsE U type IV secretory pathway VirB4
COODHJFA_01476 8.8e-62 S PrgI family protein
COODHJFA_01477 5.3e-145
COODHJFA_01478 8.9e-26
COODHJFA_01479 0.0 XK27_00515 D Cell surface antigen C-terminus
COODHJFA_01480 2.9e-39
COODHJFA_01481 2.6e-16 S Transcription factor WhiB
COODHJFA_01482 6.3e-23
COODHJFA_01483 5.7e-102 parA D AAA domain
COODHJFA_01484 1.8e-89 S Transcription factor WhiB
COODHJFA_01485 7.4e-42
COODHJFA_01486 1.1e-43 S Helix-turn-helix domain
COODHJFA_01487 2.6e-99 S Helix-turn-helix domain
COODHJFA_01488 1.4e-14
COODHJFA_01489 3.9e-27
COODHJFA_01490 1e-128
COODHJFA_01491 4.7e-66
COODHJFA_01493 1.3e-112 ppiA 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COODHJFA_01494 0.0 relA 2.7.6.5, 3.1.7.2 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
COODHJFA_01495 2.9e-84 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
COODHJFA_01496 1.4e-47 S Domain of unknown function (DUF4193)
COODHJFA_01497 1.2e-149 S Protein of unknown function (DUF3071)
COODHJFA_01498 7.7e-233 S Type I phosphodiesterase / nucleotide pyrophosphatase
COODHJFA_01499 0.0 gyrA 5.99.1.3 L DNA topoisomerase (ATP-hydrolyzing)
COODHJFA_01501 5.2e-43 K Psort location Cytoplasmic, score
COODHJFA_01502 1.2e-48 K Psort location Cytoplasmic, score
COODHJFA_01503 0.0 lhr L DEAD DEAH box helicase
COODHJFA_01504 1.7e-171 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
COODHJFA_01505 3.8e-221 G Major Facilitator Superfamily
COODHJFA_01506 0.0 gyrB2 5.99.1.3 L DNA topoisomerase (ATP-hydrolyzing)
COODHJFA_01507 8.2e-191 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COODHJFA_01508 9.6e-115
COODHJFA_01509 6.5e-196 crtE 2.5.1.1, 2.5.1.10, 2.5.1.29 H Belongs to the FPP GGPP synthase family
COODHJFA_01510 0.0 pknL 2.7.11.1 KLT PASTA
COODHJFA_01511 4e-130 plsC2 2.3.1.51 I Phosphate acyltransferases
COODHJFA_01512 6.5e-117
COODHJFA_01513 1.8e-190 trpD 2.4.2.18, 4.1.3.27 F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
COODHJFA_01514 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
COODHJFA_01515 2.4e-113 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
COODHJFA_01516 8.7e-102 recX S Modulates RecA activity
COODHJFA_01517 1.1e-196 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
COODHJFA_01518 7e-39 S Protein of unknown function (DUF3046)
COODHJFA_01519 2.2e-77 K Helix-turn-helix XRE-family like proteins
COODHJFA_01520 4.6e-97 cinA 3.5.1.42 S Belongs to the CinA family
COODHJFA_01521 2.1e-117 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
COODHJFA_01522 0.0 ftsK D FtsK SpoIIIE family protein
COODHJFA_01523 2.4e-150 fic D Fic/DOC family
COODHJFA_01524 4.8e-182 miaA 2.5.1.75 F Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
COODHJFA_01525 3.1e-278 miaB 2.8.4.3 H Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
COODHJFA_01526 1.7e-148 relA2 2.7.6.5 S Region found in RelA / SpoT proteins
COODHJFA_01527 2.1e-166 ydeD EG EamA-like transporter family
COODHJFA_01528 1.5e-136 ybhL S Belongs to the BI1 family
COODHJFA_01529 2.2e-82 K helix_turn_helix, Lux Regulon
COODHJFA_01530 6.8e-121 E Psort location Cytoplasmic, score 8.87
COODHJFA_01531 0.0 acnA 4.2.1.3 C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
COODHJFA_01532 0.0 ctpE P E1-E2 ATPase
COODHJFA_01533 2.2e-97
COODHJFA_01534 9e-242 trmA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
COODHJFA_01535 3.8e-134 S Protein of unknown function (DUF3159)
COODHJFA_01536 8.1e-154 S Protein of unknown function (DUF3710)
COODHJFA_01537 3.3e-171 exoA 3.1.11.2 L Endonuclease/Exonuclease/phosphatase family
COODHJFA_01538 0.0 dppD EP Oligopeptide/dipeptide transporter, C-terminal region
COODHJFA_01539 1.1e-173 dppC EP N-terminal TM domain of oligopeptide transport permease C
COODHJFA_01540 8.9e-154 dppB EP Binding-protein-dependent transport system inner membrane component
COODHJFA_01541 0.0 E ABC transporter, substrate-binding protein, family 5
COODHJFA_01542 1.8e-187 xerC D Belongs to the 'phage' integrase family. XerC subfamily
COODHJFA_01543 6.4e-148 V ABC transporter, ATP-binding protein
COODHJFA_01544 0.0 MV MacB-like periplasmic core domain
COODHJFA_01545 2.9e-41
COODHJFA_01546 6.5e-190 tyrA 1.3.1.12, 1.3.1.43 E Prephenate dehydrogenase
COODHJFA_01547 1.3e-187 pheA 1.3.1.12, 4.2.1.51, 5.4.99.5 E Prephenate dehydratase
COODHJFA_01548 5.2e-78
COODHJFA_01549 0.0 typA T Elongation factor G C-terminus
COODHJFA_01550 7e-107 K Virulence activator alpha C-term
COODHJFA_01551 4.8e-137 V ATPases associated with a variety of cellular activities
COODHJFA_01552 0.0 V FtsX-like permease family
COODHJFA_01553 5.9e-19 naiP U Sugar (and other) transporter
COODHJFA_01554 6.7e-240 iscS1 2.8.1.7 E Aminotransferase class-V
COODHJFA_01555 3.8e-162 nadC 1.4.3.16, 2.4.2.19 H Quinolinate phosphoribosyl transferase, N-terminal domain
COODHJFA_01556 1.1e-295 nadB 1.3.5.4, 1.4.3.16, 2.4.2.19 H Catalyzes the oxidation of L-aspartate to iminoaspartate
COODHJFA_01557 6.3e-251 nadA 2.5.1.72 H Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
COODHJFA_01558 3.4e-160 nrtR 3.6.1.55 F NUDIX hydrolase
COODHJFA_01559 3.1e-116 scpB D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
COODHJFA_01560 8.5e-151 scpA D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
COODHJFA_01561 1.5e-151 soj D CobQ CobB MinD ParA nucleotide binding domain protein
COODHJFA_01562 2.7e-158 xerD D recombinase XerD
COODHJFA_01563 6.6e-215 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
COODHJFA_01564 1.8e-60 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
COODHJFA_01565 6.2e-25 rpmI J Ribosomal protein L35
COODHJFA_01566 1.1e-112 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
COODHJFA_01567 2e-55 S Spermine/spermidine synthase domain
COODHJFA_01568 4.2e-135 2.7.6.2 H Thiamin pyrophosphokinase, vitamin B1 binding domain
COODHJFA_01569 1.3e-196 gap 1.2.1.12 G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
COODHJFA_01570 4.2e-89 ybaK J Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
COODHJFA_01571 7.5e-183 ispH 1.17.7.4, 2.7.4.25 IM Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
COODHJFA_01572 4.2e-191 galM 5.1.3.3 G Aldose 1-epimerase
COODHJFA_01573 1.1e-188 galM 5.1.3.3 G Aldose 1-epimerase
COODHJFA_01574 3.3e-52
COODHJFA_01575 1.8e-136 sigH K Belongs to the sigma-70 factor family. ECF subfamily
COODHJFA_01576 7.1e-297 murE 6.3.2.13, 6.3.2.7 M Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
COODHJFA_01577 2.3e-195 V Acetyltransferase (GNAT) domain
COODHJFA_01578 3.3e-80 V Acetyltransferase (GNAT) domain
COODHJFA_01579 0.0 smc D Required for chromosome condensation and partitioning
COODHJFA_01580 4e-303 folC 6.3.2.12, 6.3.2.17 H Mur ligase middle domain
COODHJFA_01581 0.0 pepP 3.4.11.9 E Aminopeptidase P, N-terminal domain
COODHJFA_01582 6.6e-98 3.6.1.55 F NUDIX domain
COODHJFA_01583 6.5e-248 nagA 3.5.1.25 G Amidohydrolase family
COODHJFA_01584 6.2e-151 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
COODHJFA_01585 3.6e-210 GK ROK family
COODHJFA_01586 2.2e-165 2.7.1.2 GK ROK family
COODHJFA_01587 2.3e-226 GK ROK family
COODHJFA_01588 1.2e-168 2.7.1.4 G pfkB family carbohydrate kinase
COODHJFA_01589 6.4e-43 G Major Facilitator Superfamily
COODHJFA_01590 4.3e-77 G Major Facilitator Superfamily
COODHJFA_01591 3.2e-86 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
COODHJFA_01592 6.4e-130 int8 L Phage integrase family
COODHJFA_01593 1.7e-09
COODHJFA_01594 2.8e-11
COODHJFA_01595 1.4e-27 K Transcriptional regulator
COODHJFA_01596 6.9e-53
COODHJFA_01597 3.8e-15
COODHJFA_01598 8.4e-76 V Ami_2
COODHJFA_01605 2.3e-37
COODHJFA_01607 0.0 ebh 2.1.1.80, 3.1.1.61 S cellulase activity
COODHJFA_01609 1e-83 NT phage tail tape measure protein
COODHJFA_01611 1.4e-29
COODHJFA_01613 1.4e-43
COODHJFA_01614 5.8e-31
COODHJFA_01615 5.4e-25
COODHJFA_01616 1.8e-31
COODHJFA_01617 1.6e-19
COODHJFA_01619 1.7e-112 xkdG S Phage capsid family
COODHJFA_01620 3.7e-33 xkdG S Phage capsid family
COODHJFA_01621 1.3e-68 S Phage portal protein
COODHJFA_01622 6.2e-304 S Terminase
COODHJFA_01623 3.3e-43
COODHJFA_01625 5.1e-50 L HNH nucleases
COODHJFA_01626 8e-121
COODHJFA_01627 4.3e-15
COODHJFA_01631 9.8e-09
COODHJFA_01632 4.2e-75
COODHJFA_01633 6e-21 S DNA N-6-adenine-methyltransferase (Dam)
COODHJFA_01638 1e-50
COODHJFA_01639 3.4e-62
COODHJFA_01640 1.2e-48 ssb1 L Single-strand binding protein family
COODHJFA_01642 3.2e-73 recT L RecT family
COODHJFA_01643 6.3e-86 yqaJ L YqaJ-like viral recombinase domain
COODHJFA_01647 5.4e-104 K BRO family, N-terminal domain
COODHJFA_01648 1.3e-69 2.1.1.37 L C-5 cytosine-specific DNA methylase
COODHJFA_01649 2.6e-08
COODHJFA_01650 2.1e-50 Q methyltransferase
COODHJFA_01652 1.2e-07
COODHJFA_01655 1.3e-47
COODHJFA_01657 3.5e-64
COODHJFA_01658 7.7e-14
COODHJFA_01659 2.1e-172 ftsQ 6.3.2.4 D Cell division protein FtsQ
COODHJFA_01660 2.5e-286 murC 6.3.2.8 M Belongs to the MurCDEF family
COODHJFA_01661 1.2e-219 murG 2.4.1.227, 6.3.2.8 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
COODHJFA_01662 2.5e-225 ftsW 2.4.1.227 GT28 D Belongs to the SEDS family
COODHJFA_01663 5.1e-273 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
COODHJFA_01664 1.2e-205 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
COODHJFA_01665 7.4e-240 murF 6.3.2.10 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
COODHJFA_01666 2e-155 yqeC 6.3.2.10, 6.3.2.13 M Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
COODHJFA_01667 0.0 ftsI 3.4.16.4 M Penicillin-binding protein, transpeptidase domain protein
COODHJFA_01668 6.9e-67 ftsL D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
COODHJFA_01669 8.7e-190 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
COODHJFA_01670 1.3e-93 mraZ K Belongs to the MraZ family
COODHJFA_01671 0.0 L DNA helicase
COODHJFA_01672 1.3e-229 serA 1.1.1.399, 1.1.1.95 EH D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
COODHJFA_01673 8.4e-78 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
COODHJFA_01674 3e-47 M Lysin motif
COODHJFA_01675 6.9e-130 lexA 3.4.21.88 K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
COODHJFA_01676 1.4e-162 czcD P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
COODHJFA_01677 1.7e-176 ldh 1.1.1.27, 1.1.1.37 C Belongs to the LDH MDH superfamily. LDH family
COODHJFA_01678 4.6e-272 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
COODHJFA_01679 3.4e-123 rsmC 2.1.1.172 J Ribosomal protein L11 methyltransferase (PrmA)
COODHJFA_01680 0.0 hrpA 3.6.4.13 L Helicase associated domain (HA2) Add an annotation
COODHJFA_01681 1.1e-217 EGP Major facilitator Superfamily
COODHJFA_01682 2.1e-265 glnA2 6.3.1.2 E glutamine synthetase
COODHJFA_01683 8.9e-278 S Uncharacterized protein conserved in bacteria (DUF2252)
COODHJFA_01684 1.4e-130 hisA 5.3.1.16, 5.3.1.24 E Histidine biosynthesis protein
COODHJFA_01685 1.4e-121 hisH E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
COODHJFA_01686 5e-99
COODHJFA_01687 4.6e-111 hisB 1.1.1.23, 2.6.1.9, 3.1.3.15, 4.2.1.19 E Imidazoleglycerol-phosphate dehydratase
COODHJFA_01688 1.8e-220 hisC 2.6.1.9 E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
COODHJFA_01689 1.9e-253 hisD 1.1.1.23, 1.1.1.308 E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
COODHJFA_01690 1.1e-53 acyP 3.6.1.7 C Acylphosphatase
COODHJFA_01691 7.7e-157 yvgN 1.1.1.346 S Aldo/keto reductase family
COODHJFA_01692 0.0 2.4.1.230, 3.2.1.51 GH65,GH95 G Glycosyl hydrolase family 65, N-terminal domain
COODHJFA_01693 7.5e-166 dapA 4.1.2.28, 4.3.3.7 EM Dihydrodipicolinate synthetase family
COODHJFA_01694 2.5e-152 S Amidohydrolase
COODHJFA_01695 5.1e-142 IQ KR domain
COODHJFA_01696 9e-167 4.2.1.68 M Enolase C-terminal domain-like
COODHJFA_01697 7.1e-188 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
COODHJFA_01698 1.1e-71 I Sterol carrier protein
COODHJFA_01699 3.7e-220 EGP Major Facilitator Superfamily
COODHJFA_01700 1.3e-207 2.7.13.3 T Histidine kinase
COODHJFA_01701 3.6e-112 K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
COODHJFA_01702 1.2e-38 S Protein of unknown function (DUF3073)
COODHJFA_01703 5.5e-203 trpS 6.1.1.2 J Belongs to the class-I aminoacyl-tRNA synthetase family
COODHJFA_01704 9.3e-300 S Amidohydrolase family
COODHJFA_01705 1.3e-166 gmk 1.1.1.23, 2.7.4.8 S Protein conserved in bacteria
COODHJFA_01706 1.8e-298 putP E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
COODHJFA_01707 0.0 yjjP S Threonine/Serine exporter, ThrE
COODHJFA_01708 0.0 ppc 4.1.1.31 H Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
COODHJFA_01710 2.3e-311 3.6.4.12 K Putative ATP-dependent DNA helicase recG C-terminal
COODHJFA_01711 1e-125 S AAA domain
COODHJFA_01712 0.0 yliE T Putative diguanylate phosphodiesterase
COODHJFA_01713 4.2e-110 S Domain of unknown function (DUF4956)
COODHJFA_01714 4.1e-158 P VTC domain
COODHJFA_01715 0.0 cotH M CotH kinase protein
COODHJFA_01716 1.2e-280 pelG S Putative exopolysaccharide Exporter (EPS-E)
COODHJFA_01717 1.6e-279 pelF GT4 M Domain of unknown function (DUF3492)
COODHJFA_01718 8.4e-210 S Uncharacterised protein conserved in bacteria (DUF2194)
COODHJFA_01719 1.4e-102 S Uncharacterised protein conserved in bacteria (DUF2194)
COODHJFA_01720 8.5e-165
COODHJFA_01721 0.0 5.1.3.2 GM ADP-glyceromanno-heptose 6-epimerase activity
COODHJFA_01722 0.0 trxB2 1.8.1.9 C Thioredoxin domain
COODHJFA_01723 1e-107 ahpC 1.11.1.15 O C-terminal domain of 1-Cys peroxiredoxin
COODHJFA_01724 6.6e-122 cah 4.2.1.1 P Reversible hydration of carbon dioxide
COODHJFA_01725 9.7e-211 S AAA ATPase domain
COODHJFA_01726 2.7e-236 ytfL P Transporter associated domain
COODHJFA_01727 2.1e-82 dps P Belongs to the Dps family
COODHJFA_01728 2e-255 S Domain of unknown function (DUF4143)
COODHJFA_01730 3.8e-122 S Protein of unknown function DUF45
COODHJFA_01733 5.3e-197 S Psort location CytoplasmicMembrane, score
COODHJFA_01734 4.3e-258 gdhA 1.4.1.4 E Belongs to the Glu Leu Phe Val dehydrogenases family
COODHJFA_01735 3.5e-206 V VanZ like family
COODHJFA_01736 0.0 lacL 3.2.1.23 G Psort location Cytoplasmic, score 8.87
COODHJFA_01737 2.3e-13 lacS G Psort location CytoplasmicMembrane, score 10.00
COODHJFA_01738 1e-182 lacR K Transcriptional regulator, LacI family
COODHJFA_01739 2.4e-50 S Transmembrane domain of unknown function (DUF3566)
COODHJFA_01740 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COODHJFA_01741 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COODHJFA_01742 4.2e-83 S Protein of unknown function (DUF721)
COODHJFA_01743 2.2e-202 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
COODHJFA_01744 1.9e-206 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
COODHJFA_01745 3.3e-280 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
COODHJFA_01746 2.6e-14 rpmH J Belongs to the bacterial ribosomal protein bL34 family
COODHJFA_01747 1.6e-55 rnpA 3.1.26.5 J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
COODHJFA_01748 5.8e-183 yidC U Membrane protein insertase, YidC Oxa1 family
COODHJFA_01749 6.6e-93 jag S Putative single-stranded nucleic acids-binding domain
COODHJFA_01750 1.2e-123 rsmG 2.1.1.170 J Specifically methylates the N7 position of a guanine in 16S rRNA
COODHJFA_01751 9.6e-175 parA D CobQ CobB MinD ParA nucleotide binding domain protein
COODHJFA_01752 1.6e-222 parB K Belongs to the ParB family
COODHJFA_01753 7e-176 trxB 1.8.1.9, 4.3.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
COODHJFA_01754 0.0 murJ KLT MviN-like protein
COODHJFA_01755 0.0
COODHJFA_01756 2.8e-166 deoC 3.6.1.13, 3.6.1.17, 3.6.1.55, 3.6.1.61 L Belongs to the Nudix hydrolase family
COODHJFA_01757 9.2e-283 cca 2.7.7.19, 2.7.7.72 J Probable RNA and SrmB- binding site of polymerase A
COODHJFA_01758 8.3e-111 S LytR cell envelope-related transcriptional attenuator
COODHJFA_01759 1.5e-177 ispE 2.1.1.182, 2.7.1.148 F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
COODHJFA_01760 4.4e-169 ksgA 2.1.1.182, 2.1.1.184 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
COODHJFA_01761 4.5e-216 S G5
COODHJFA_01763 9.4e-138 O Thioredoxin
COODHJFA_01764 0.0 KLT Protein tyrosine kinase
COODHJFA_01765 0.0 3.2.1.21 GH3 G Fibronectin type III-like domain
COODHJFA_01766 7e-71 kcsA U Ion channel
COODHJFA_01767 2.6e-126 S Protein of unknown function (DUF3990)
COODHJFA_01768 5.3e-121 K Helix-turn-helix XRE-family like proteins
COODHJFA_01769 0.0 3.2.1.21 GH3 G Glycosyl hydrolase family 3 N-terminal domain protein
COODHJFA_01770 9.8e-123 S Psort location CytoplasmicMembrane, score
COODHJFA_01771 2e-42 nrdH O Glutaredoxin
COODHJFA_01772 2.1e-88 nrdI F Probably involved in ribonucleotide reductase function
COODHJFA_01773 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
COODHJFA_01775 1.3e-190 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
COODHJFA_01776 3.2e-229 T GHKL domain
COODHJFA_01777 5.1e-142 K LytTr DNA-binding domain
COODHJFA_01778 3.6e-221 2.4.1.166 GT2 M Glycosyltransferase like family 2
COODHJFA_01779 2.1e-73 2.7.1.194, 2.7.1.202 G Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
COODHJFA_01780 3.7e-45 ulaB 2.7.1.194 G PTS system, Lactose/Cellobiose specific IIB subunit
COODHJFA_01781 2.2e-241 ulaA 2.7.1.194 S PTS system sugar-specific permease component
COODHJFA_01782 1e-75 K UTRA domain
COODHJFA_01783 4.3e-211 ugpC E Belongs to the ABC transporter superfamily
COODHJFA_01784 6.2e-48 S LPXTG-motif cell wall anchor domain protein
COODHJFA_01785 3e-145 tnp3514b L Winged helix-turn helix
COODHJFA_01786 1e-185
COODHJFA_01787 5e-142 U Branched-chain amino acid transport system / permease component
COODHJFA_01788 8.7e-178 3.6.3.17 G ATPases associated with a variety of cellular activities
COODHJFA_01789 4.2e-146 G Periplasmic binding protein domain
COODHJFA_01790 1.1e-131 K helix_turn _helix lactose operon repressor
COODHJFA_01791 7.6e-18 tnp7109-21 L Integrase core domain
COODHJFA_01792 4.4e-155
COODHJFA_01793 1.1e-269 KLT Domain of unknown function (DUF4032)
COODHJFA_01794 4.2e-302 galT 2.7.7.12 G UDP-glucose--hexose-1-phosphate uridylyltransferase
COODHJFA_01795 5.9e-168 yeaD 4.2.1.9, 5.1.3.15 G Aldose 1-epimerase
COODHJFA_01796 1.2e-175 rlmB 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
COODHJFA_01797 6.3e-200 EGP Major facilitator Superfamily
COODHJFA_01798 1.6e-288 nagE 2.7.1.193, 2.7.1.199 G phosphotransferase system, EIIB
COODHJFA_01799 7.5e-86 2.7.1.208 G phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
COODHJFA_01800 2e-16 K helix_turn _helix lactose operon repressor
COODHJFA_01801 0.0 pacL2 3.6.3.8 P Cation transporter/ATPase, N-terminus
COODHJFA_01802 1e-36
COODHJFA_01803 9e-112 dcd 3.5.4.13 F Belongs to the dCTP deaminase family
COODHJFA_01804 3.7e-154
COODHJFA_01805 7.3e-146 ypfH S Phospholipase/Carboxylesterase
COODHJFA_01806 2.5e-120 S membrane transporter protein
COODHJFA_01807 0.0 yjcE P Sodium/hydrogen exchanger family
COODHJFA_01808 2.6e-79 tadA 3.5.4.1, 3.5.4.33, 3.8.1.5, 6.3.4.19 FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
COODHJFA_01809 0.0 3.2.1.22 G Glycosyl hydrolase family 36 N-terminal domain
COODHJFA_01810 3.8e-229 nagC GK ROK family
COODHJFA_01811 8.9e-245 msmE7 G Bacterial extracellular solute-binding protein
COODHJFA_01812 1.1e-143 malC G Binding-protein-dependent transport system inner membrane component
COODHJFA_01813 2.9e-154 G Binding-protein-dependent transport system inner membrane component
COODHJFA_01814 0.0 3.2.1.10 GH13 G Alpha amylase, catalytic domain protein
COODHJFA_01815 5.5e-231 tdcB 4.3.1.19 E Pyridoxal-phosphate dependent enzyme
COODHJFA_01816 4.9e-142 cobB2 K Sir2 family
COODHJFA_01817 1.2e-25 L Transposase, Mutator family
COODHJFA_01818 3.9e-07
COODHJFA_01820 1.4e-10 L HTH-like domain
COODHJFA_01821 5e-21 L PFAM Integrase catalytic
COODHJFA_01822 1.4e-86
COODHJFA_01823 6.8e-67
COODHJFA_01824 1.5e-55 L Transposase, Mutator family
COODHJFA_01825 5.7e-84 2.7.7.49 L Transposase, Mutator family
COODHJFA_01826 3.9e-30 L Transposase
COODHJFA_01827 4.9e-275 L PFAM Integrase catalytic
COODHJFA_01828 4.8e-45 S AAA ATPase domain
COODHJFA_01829 7.1e-103 K Transposase IS116 IS110 IS902
COODHJFA_01830 1.9e-261 S Psort location CytoplasmicMembrane, score 9.99
COODHJFA_01831 3.2e-69
COODHJFA_01832 1.9e-235 wcoI DM Psort location CytoplasmicMembrane, score
COODHJFA_01833 9.5e-152
COODHJFA_01834 8.5e-171 S G5
COODHJFA_01835 1.9e-59 trxA 1.8.1.8, 1.8.1.9 O Belongs to the thioredoxin family
COODHJFA_01836 7.8e-120 F Domain of unknown function (DUF4916)
COODHJFA_01837 2.4e-158 mhpC I Alpha/beta hydrolase family
COODHJFA_01838 6.3e-211 nudC 1.3.7.1, 3.6.1.22 L NADH pyrophosphatase zinc ribbon domain
COODHJFA_01839 5.9e-70 gcvH E The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein
COODHJFA_01840 2.5e-225 S Uncharacterized conserved protein (DUF2183)
COODHJFA_01841 0.0 ptrB 3.4.21.83 E Peptidase, S9A B C family, catalytic domain protein
COODHJFA_01842 4.4e-123 ptrB 3.4.21.83 E Peptidase, S9A B C family, catalytic domain protein
COODHJFA_01843 5.4e-192 leuB 1.1.1.85 CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
COODHJFA_01844 3.1e-215 lplA 6.3.1.20 H Biotin/lipoate A/B protein ligase family
COODHJFA_01845 2.1e-134 glxR K helix_turn_helix, cAMP Regulatory protein
COODHJFA_01846 0.0 pon1 2.4.1.129, 3.4.16.4 GT51 M Transglycosylase
COODHJFA_01847 4.1e-229 namA 1.6.99.1 C NADH:flavin oxidoreductase / NADH oxidase family
COODHJFA_01848 1.8e-228 pyrD 1.3.1.14, 1.3.5.2, 1.3.98.1 F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
COODHJFA_01849 2.8e-123 glpR K DeoR C terminal sensor domain
COODHJFA_01850 6.6e-253 galT 2.7.7.12 C Galactose-1-phosphate uridyl transferase, N-terminal domain
COODHJFA_01851 2e-233 galK 2.7.1.6, 2.7.7.12 G Belongs to the GHMP kinase family. GalK subfamily
COODHJFA_01852 3.2e-43 gcvR T Belongs to the UPF0237 family
COODHJFA_01853 4.7e-252 S UPF0210 protein
COODHJFA_01854 7.6e-115 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
COODHJFA_01855 3.1e-186 mutY 2.1.1.37, 2.1.3.15, 6.4.1.2 L FES
COODHJFA_01856 1.9e-101
COODHJFA_01857 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COODHJFA_01858 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COODHJFA_01859 0.0 E Transglutaminase-like superfamily
COODHJFA_01860 2.5e-239 S Protein of unknown function DUF58
COODHJFA_01861 0.0 S Fibronectin type 3 domain
COODHJFA_01862 1.6e-221 KLT Protein tyrosine kinase
COODHJFA_01863 0.0 uvrD 3.6.4.12 L PD-(D/E)XK nuclease superfamily
COODHJFA_01864 0.0 uvrD2 3.6.4.12 L Belongs to the helicase family. UvrD subfamily
COODHJFA_01865 1.7e-235 G Major Facilitator Superfamily
COODHJFA_01866 1.7e-134 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
COODHJFA_01867 1.7e-162 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
COODHJFA_01868 0.0 rnj J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
COODHJFA_01869 0.0 pepN 3.4.11.2 E Peptidase family M1 domain
COODHJFA_01870 5.8e-258 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
COODHJFA_01871 7.5e-123 def 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
COODHJFA_01872 3.2e-267 recE 2.7.7.7, 3.6.4.12 L Psort location Cytoplasmic, score
COODHJFA_01873 1.6e-205 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
COODHJFA_01874 1.3e-205 ftsE D Cell division ATP-binding protein FtsE
COODHJFA_01875 9.8e-161 ftsX D Part of the ABC transporter FtsEX involved in cellular division
COODHJFA_01876 4e-147 usp 3.5.1.28 CBM50 D CHAP domain protein
COODHJFA_01877 6.3e-79 smpB J the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
COODHJFA_01878 5.6e-143 pknD ET ABC transporter, substrate-binding protein, family 3
COODHJFA_01879 3.4e-169 pknD ET ABC transporter, substrate-binding protein, family 3
COODHJFA_01880 4.7e-153 yecS E Binding-protein-dependent transport system inner membrane component
COODHJFA_01881 1.4e-150 tcyC 3.6.3.21 E ATPases associated with a variety of cellular activities
COODHJFA_01882 0.0 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
COODHJFA_01883 3.6e-142 rluA 5.4.99.28, 5.4.99.29 J RNA pseudouridylate synthase
COODHJFA_01884 4.3e-186 K Periplasmic binding protein domain
COODHJFA_01885 4.2e-45 5.3.1.27 G sugar phosphate isomerase involved in capsule formation
COODHJFA_01886 2e-59 G Branched-chain amino acid transport system / permease component
COODHJFA_01887 2.9e-73 P branched-chain amino acid ABC transporter, permease protein
COODHJFA_01888 6.3e-120 G ATPases associated with a variety of cellular activities
COODHJFA_01889 1.3e-81 G ABC-type sugar transport system periplasmic component
COODHJFA_01890 8.6e-167 xylB 1.1.1.57, 2.7.1.17 G Belongs to the FGGY kinase family
COODHJFA_01891 2.3e-75 xylR GK ROK family
COODHJFA_01892 8.7e-37
COODHJFA_01893 3.8e-201 M Glycosyltransferase like family 2
COODHJFA_01894 7.8e-183 S Predicted membrane protein (DUF2142)
COODHJFA_01895 0.0 XK27_08315 M Psort location CytoplasmicMembrane, score 9.26
COODHJFA_01896 0.0 GT2,GT4 M Glycosyl transferase family 2
COODHJFA_01897 1.1e-164 rgpD 3.6.3.38 GM ABC transporter, ATP-binding protein
COODHJFA_01898 1.4e-118 rgpC U Transport permease protein
COODHJFA_01899 7.2e-169 rfbA 2.7.7.24 H Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
COODHJFA_01900 2.4e-286 rmlC 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
COODHJFA_01901 5.5e-205 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
COODHJFA_01902 0.0
COODHJFA_01903 7e-138 rfbJ M Glycosyl transferase family 2
COODHJFA_01904 4.8e-22 M nuclease
COODHJFA_01905 2.9e-67 M L,D-transpeptidase catalytic domain
COODHJFA_01906 6.7e-166 lytC 3.1.4.46, 3.2.1.17, 3.2.1.96 M Glycosyl hydrolases family 25
COODHJFA_01907 3.8e-225 K Cell envelope-related transcriptional attenuator domain
COODHJFA_01908 7.5e-256 V ABC transporter permease
COODHJFA_01909 8.1e-184 V ABC transporter
COODHJFA_01910 9.9e-143 T HD domain
COODHJFA_01911 5.5e-161 S Glutamine amidotransferase domain
COODHJFA_01912 0.0 kup P Transport of potassium into the cell
COODHJFA_01913 9.1e-186 tatD L TatD related DNase
COODHJFA_01914 0.0 yknV V ABC transporter
COODHJFA_01915 0.0 mdlA2 V ABC transporter
COODHJFA_01916 2.3e-23 S ATPase domain predominantly from Archaea
COODHJFA_01917 2e-252 S Domain of unknown function (DUF4143)
COODHJFA_01918 1.1e-42 G Glycosyl hydrolases family 43
COODHJFA_01919 2.3e-69 oppA E Bacterial extracellular solute-binding proteins, family 5 Middle
COODHJFA_01920 2.5e-65 oppA E Bacterial extracellular solute-binding proteins, family 5 Middle
COODHJFA_01921 2.5e-85 pepC 3.4.22.40 E Peptidase C1-like family
COODHJFA_01922 1.5e-46
COODHJFA_01923 0.0 metG 6.1.1.10 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
COODHJFA_01924 2.3e-119
COODHJFA_01925 3.1e-184 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
COODHJFA_01927 2.3e-257 G MFS/sugar transport protein
COODHJFA_01928 2.3e-181 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
COODHJFA_01929 0.0 lmrA2 V ABC transporter transmembrane region
COODHJFA_01930 0.0 lmrA1 V ABC transporter, ATP-binding protein
COODHJFA_01931 3.9e-90 ydgJ K helix_turn_helix multiple antibiotic resistance protein
COODHJFA_01932 2.2e-279 cycA E Amino acid permease
COODHJFA_01933 0.0 V FtsX-like permease family
COODHJFA_01934 7.5e-129 V ABC transporter
COODHJFA_01935 2.3e-268 aroP E aromatic amino acid transport protein AroP K03293
COODHJFA_01936 1.7e-105 S Protein of unknown function, DUF624
COODHJFA_01937 6.8e-153 rafG G ABC transporter permease
COODHJFA_01938 4.4e-147 malC G Binding-protein-dependent transport system inner membrane component
COODHJFA_01939 1.4e-184 K Psort location Cytoplasmic, score
COODHJFA_01940 4.5e-252 amyE G Bacterial extracellular solute-binding protein
COODHJFA_01941 3.6e-102 G Phosphoglycerate mutase family
COODHJFA_01942 4.4e-59 S Protein of unknown function (DUF4235)
COODHJFA_01943 4.2e-141 nfrA 1.5.1.38, 1.5.1.39 C Nitroreductase family
COODHJFA_01944 0.0 pip S YhgE Pip domain protein
COODHJFA_01945 7e-280 pip S YhgE Pip domain protein
COODHJFA_01946 1.8e-40
COODHJFA_01947 0.0 bga1 3.2.1.23 G Psort location Cytoplasmic, score 8.87
COODHJFA_01948 8.8e-190 K helix_turn _helix lactose operon repressor
COODHJFA_01949 3.8e-88 dkgA 1.1.1.346 S Oxidoreductase, aldo keto reductase family protein
COODHJFA_01950 4.9e-142 L Protein of unknown function (DUF1524)
COODHJFA_01951 4.6e-236 mntH P H( )-stimulated, divalent metal cation uptake system
COODHJFA_01952 2.7e-283 EGP Major facilitator Superfamily
COODHJFA_01953 7.7e-311 2.1.1.107, 2.1.1.294, 2.7.1.181, 2.7.11.1 H Protein of unknown function (DUF4012)
COODHJFA_01954 5.1e-235 rfbP 2.7.8.6 M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COODHJFA_01955 6.3e-108 3.1.3.48 T Low molecular weight phosphatase family
COODHJFA_01956 4.6e-114 S Psort location CytoplasmicMembrane, score 9.99
COODHJFA_01958 9.5e-187 L Transposase and inactivated derivatives IS30 family
COODHJFA_01959 2e-139 M Psort location Cytoplasmic, score 8.87
COODHJFA_01960 1.7e-52 GT4 M Psort location Cytoplasmic, score 8.87
COODHJFA_01961 1.2e-07
COODHJFA_01962 8.9e-63 C Polysaccharide pyruvyl transferase
COODHJFA_01963 2.9e-119 S Psort location CytoplasmicMembrane, score 9.99
COODHJFA_01964 1.3e-46 M Glycosyltransferase like family 2
COODHJFA_01965 1.2e-178 menD 2.2.1.9 H Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
COODHJFA_01966 1e-51 S Appr-1'-p processing enzyme
COODHJFA_01967 6e-74 S von Willebrand factor (vWF) type A domain
COODHJFA_01968 6e-85 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
COODHJFA_01969 0.0 3.2.1.24 GH38 G Alpha mannosidase, middle domain
COODHJFA_01970 0.0 3.2.1.24 GH38 G Alpha mannosidase, middle domain
COODHJFA_01971 1.4e-175 srrA1 G Bacterial extracellular solute-binding protein
COODHJFA_01972 1.3e-123 G Binding-protein-dependent transport system inner membrane component
COODHJFA_01973 5.9e-125 lacG G Binding-protein-dependent transport system inner membrane component
COODHJFA_01974 1.8e-221 G Belongs to the glycosyl hydrolase 5 (cellulase A) family
COODHJFA_01975 4.2e-139 K helix_turn _helix lactose operon repressor
COODHJFA_01976 9.2e-10
COODHJFA_01977 4e-93 pptA 6.3.2.14 Q 4'-phosphopantetheinyl transferase superfamily
COODHJFA_01978 1.9e-115 K WHG domain
COODHJFA_01979 2.4e-49 H Beta-ketoacyl synthase, C-terminal domain
COODHJFA_01980 5.5e-17 L Psort location Cytoplasmic, score 8.87
COODHJFA_01981 4.5e-267 EGP Major Facilitator Superfamily
COODHJFA_01982 7.8e-149 malC G Binding-protein-dependent transport system inner membrane component
COODHJFA_01983 8.5e-57 G ABC transporter permease
COODHJFA_01984 5.7e-21 G ABC transporter permease
COODHJFA_01985 2.6e-67 L PFAM Integrase catalytic
COODHJFA_01986 4.6e-134 L PFAM Integrase catalytic
COODHJFA_01987 1.9e-61 L Integrase core domain

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)