| ORF_ID | e_value | Gene_name | EC_number | CAZy | COGs | Description |
|---|---|---|---|---|---|---|
| GOOPBAPK_00001 | 6.2e-276 | gnd | 1.1.1.343, 1.1.1.44 | H | Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH | |
| GOOPBAPK_00002 | 9.5e-31 | |||||
| GOOPBAPK_00003 | 0.0 | poxB | 1.2.3.3, 1.2.5.1 | EH | Belongs to the TPP enzyme family | |
| GOOPBAPK_00004 | 0.0 | gidA | D | NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 | ||
| GOOPBAPK_00005 | 2.1e-252 | mnmE | S | Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 | ||
| GOOPBAPK_00006 | 1.2e-144 | yidC | U | Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins | ||
| GOOPBAPK_00007 | 2.7e-61 | rnpA | 3.1.26.5 | J | RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme | |
| GOOPBAPK_00008 | 1.1e-15 | rpmH | J | Belongs to the bacterial ribosomal protein bL34 family | ||
| GOOPBAPK_00009 | 1.6e-244 | dnaA | L | it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids | ||
| GOOPBAPK_00010 | 4.2e-182 | dnaN | 2.7.7.7 | L | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria | |
| GOOPBAPK_00011 | 2.6e-35 | yaaA | S | S4 domain protein YaaA | ||
| GOOPBAPK_00012 | 1.1e-209 | recF | L | it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP | ||
| GOOPBAPK_00013 | 0.0 | gyrB | 5.99.1.3 | L | A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | |
| GOOPBAPK_00014 | 0.0 | gyrA | 5.99.1.3 | L | A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | |
| GOOPBAPK_00015 | 9.4e-49 | rpsF | J | Binds together with S18 to 16S ribosomal RNA | ||
| GOOPBAPK_00016 | 4.5e-78 | ssb | L | Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism | ||
| GOOPBAPK_00017 | 1.2e-35 | rpsR | J | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | ||
| GOOPBAPK_00018 | 7.9e-174 | K | helix_turn_helix, arabinose operon control protein | |||
| GOOPBAPK_00019 | 8.3e-157 | htpX | O | Belongs to the peptidase M48B family | ||
| GOOPBAPK_00020 | 5.1e-96 | lemA | S | LemA family | ||
| GOOPBAPK_00021 | 7.5e-192 | ybiR | P | Citrate transporter | ||
| GOOPBAPK_00022 | 2e-70 | S | Iron-sulphur cluster biosynthesis | |||
| GOOPBAPK_00023 | 1.9e-309 | glpQ | 3.1.4.46 | C | Membrane domain of glycerophosphoryl diester phosphodiesterase | |
| GOOPBAPK_00024 | 1.2e-17 | |||||
| GOOPBAPK_00025 | 9.7e-46 | oppA | E | ABC transporter substrate-binding protein | ||
| GOOPBAPK_00026 | 5.6e-132 | oppC | P | Binding-protein-dependent transport system inner membrane component | ||
| GOOPBAPK_00027 | 2.6e-172 | oppB | P | ABC transporter permease | ||
| GOOPBAPK_00028 | 1.5e-170 | oppF | P | Belongs to the ABC transporter superfamily | ||
| GOOPBAPK_00029 | 1.1e-192 | oppD | P | Belongs to the ABC transporter superfamily | ||
| GOOPBAPK_00030 | 4.9e-35 | acpP | IQ | Carrier of the growing fatty acid chain in fatty acid biosynthesis | ||
| GOOPBAPK_00031 | 3.7e-182 | plsX | 2.3.1.15 | I | Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA | |
| GOOPBAPK_00032 | 0.0 | recG | 3.6.4.12 | L | Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) | |
| GOOPBAPK_00033 | 7.6e-305 | yloV | S | DAK2 domain fusion protein YloV | ||
| GOOPBAPK_00034 | 4e-57 | asp | S | Asp23 family, cell envelope-related function | ||
| GOOPBAPK_00035 | 1.4e-26 | rpmB | J | Belongs to the bacterial ribosomal protein bL28 family | ||
| GOOPBAPK_00036 | 1.4e-30 | |||||
| GOOPBAPK_00037 | 4.1e-124 | thiN | 2.7.6.2 | H | thiamine pyrophosphokinase | |
| GOOPBAPK_00038 | 2.9e-119 | rpe | 5.1.3.1 | G | Belongs to the ribulose-phosphate 3-epimerase family | |
| GOOPBAPK_00039 | 4.5e-163 | rsgA | 3.1.3.100 | S | One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit | |
| GOOPBAPK_00040 | 0.0 | prkC | 2.7.11.1 | KLT | serine threonine protein kinase | |
| GOOPBAPK_00041 | 1.1e-138 | stp | 3.1.3.16 | T | phosphatase | |
| GOOPBAPK_00042 | 1.6e-244 | sun | 2.1.1.176 | J | Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA | |
| GOOPBAPK_00043 | 5.7e-172 | fmt | 2.1.2.9 | J | Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus | |
| GOOPBAPK_00044 | 0.0 | priA | L | Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA | ||
| GOOPBAPK_00045 | 1.1e-33 | rpoZ | 2.7.7.6 | K | Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | |
| GOOPBAPK_00046 | 2.1e-111 | gmk | 2.7.4.8, 4.1.1.23 | F | Essential for recycling GMP and indirectly, cGMP | |
| GOOPBAPK_00047 | 1.1e-77 | 6.3.3.2 | S | ASCH | ||
| GOOPBAPK_00048 | 2.6e-300 | recN | L | May be involved in recombinational repair of damaged DNA | ||
| GOOPBAPK_00049 | 2.3e-153 | rrmJ | 2.1.1.226, 2.1.1.227 | J | Ribosomal RNA large subunit methyltransferase J | |
| GOOPBAPK_00050 | 1e-159 | ispA | 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 | H | Belongs to the FPP GGPP synthase family | |
| GOOPBAPK_00051 | 3.7e-35 | xseB | 3.1.11.6 | L | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides | |
| GOOPBAPK_00052 | 2.9e-193 | xseA | 3.1.11.6 | L | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides | |
| GOOPBAPK_00053 | 6.7e-156 | folD | 1.5.1.5, 3.5.4.9 | F | Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate | |
| GOOPBAPK_00054 | 1.1e-63 | nusB | K | Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons | ||
| GOOPBAPK_00055 | 3.4e-71 | yqhY | S | Asp23 family, cell envelope-related function | ||
| GOOPBAPK_00056 | 4.9e-102 | efp | J | Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | ||
| GOOPBAPK_00057 | 1e-196 | pepP | 3.4.11.9, 3.4.13.9 | E | Creatinase/Prolidase N-terminal domain | |
| GOOPBAPK_00058 | 1.3e-47 | rpmA | J | Belongs to the bacterial ribosomal protein bL27 family | ||
| GOOPBAPK_00059 | 5.8e-49 | rplU | J | This protein binds to 23S rRNA in the presence of protein L20 | ||
| GOOPBAPK_00060 | 3.7e-151 | S | Uncharacterised 5xTM membrane BCR, YitT family COG1284 | |||
| GOOPBAPK_00061 | 7.8e-255 | S | Uncharacterized protein conserved in bacteria (DUF2325) | |||
| GOOPBAPK_00063 | 1.6e-27 | dmpI | 5.3.2.6 | G | Belongs to the 4-oxalocrotonate tautomerase family | |
| GOOPBAPK_00064 | 4.3e-298 | S | Predicted membrane protein (DUF2207) | |||
| GOOPBAPK_00065 | 1.2e-155 | cinI | S | Serine hydrolase (FSH1) | ||
| GOOPBAPK_00066 | 1e-205 | M | Glycosyl hydrolases family 25 | |||
| GOOPBAPK_00067 | 2e-18 | T | PemK-like, MazF-like toxin of type II toxin-antitoxin system | |||
| GOOPBAPK_00068 | 1e-12 | |||||
| GOOPBAPK_00070 | 1e-15 | S | Domain of Unknown Function with PDB structure (DUF3850) | |||
| GOOPBAPK_00071 | 5.5e-96 | D | CobQ CobB MinD ParA nucleotide binding domain protein | |||
| GOOPBAPK_00075 | 3.1e-23 | S | CAAX protease self-immunity | |||
| GOOPBAPK_00077 | 9.8e-134 | topA2 | 5.99.1.2 | L | This gene contains a nucleotide ambiguity which may be the result of a sequencing error | |
| GOOPBAPK_00079 | 7.4e-29 | |||||
| GOOPBAPK_00080 | 4.6e-37 | |||||
| GOOPBAPK_00081 | 1.9e-102 | |||||
| GOOPBAPK_00082 | 2.7e-46 | |||||
| GOOPBAPK_00083 | 3.8e-59 | M | LysM domain | |||
| GOOPBAPK_00084 | 1.5e-219 | 3.4.14.13 | M | Phage tail tape measure protein TP901 | ||
| GOOPBAPK_00086 | 2.9e-09 | |||||
| GOOPBAPK_00087 | 9.3e-29 | |||||
| GOOPBAPK_00088 | 3.5e-103 | Z012_02110 | S | Protein of unknown function (DUF3383) | ||
| GOOPBAPK_00089 | 3.3e-31 | |||||
| GOOPBAPK_00090 | 1.6e-25 | |||||
| GOOPBAPK_00091 | 1.1e-28 | |||||
| GOOPBAPK_00092 | 1.6e-19 | S | Protein of unknown function (DUF4054) | |||
| GOOPBAPK_00093 | 2.4e-93 | Z012_11565 | S | Uncharacterized protein conserved in bacteria (DUF2184) | ||
| GOOPBAPK_00094 | 4.1e-34 | |||||
| GOOPBAPK_00095 | 1.6e-57 | S | Uncharacterized protein conserved in bacteria (DUF2213) | |||
| GOOPBAPK_00096 | 5e-12 | S | Lysin motif | |||
| GOOPBAPK_00097 | 1.3e-47 | S | Phage Mu protein F like protein | |||
| GOOPBAPK_00098 | 6.2e-135 | S | Protein of unknown function (DUF1073) | |||
| GOOPBAPK_00099 | 1.1e-201 | S | Terminase-like family | |||
| GOOPBAPK_00100 | 3e-19 | ps333 | L | Terminase small subunit | ||
| GOOPBAPK_00103 | 3.3e-09 | arpU | S | Phage transcriptional regulator, ArpU family | ||
| GOOPBAPK_00106 | 3.8e-219 | XK27_11280 | S | Psort location CytoplasmicMembrane, score | ||
| GOOPBAPK_00114 | 1.2e-100 | L | Helix-turn-helix domain | |||
| GOOPBAPK_00115 | 5.3e-131 | S | ERF superfamily | |||
| GOOPBAPK_00116 | 3.9e-127 | S | Protein of unknown function (DUF1351) | |||
| GOOPBAPK_00117 | 4.6e-45 | |||||
| GOOPBAPK_00119 | 5.5e-18 | |||||
| GOOPBAPK_00120 | 1.8e-31 | S | Helix-turn-helix domain |
Showing 1 to 100 of 2,246 entries
eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)