ORF_ID e_value Gene_name EC_number CAZy COGs Description
DOJABADO_00001 1.3e-78 U Type IV secretory system Conjugative DNA transfer
DOJABADO_00002 7.2e-47 U Type IV secretory system Conjugative DNA transfer
DOJABADO_00003 1.3e-77 yxjG 2.1.1.14 E methionine synthase, vitamin-B12 independent
DOJABADO_00004 1.9e-79 S Protein of unknown function (DUF3114)
DOJABADO_00005 2.8e-49 S Protein of unknown function (DUF3290)
DOJABADO_00006 4.6e-85 yviA S Protein of unknown function (DUF421)
DOJABADO_00007 3.4e-173 nrnB S DHHA1 domain
DOJABADO_00008 2.2e-155 S Uncharacterized protein conserved in bacteria (DUF2325)
DOJABADO_00009 1.3e-214 brnQ U Component of the transport system for branched-chain amino acids
DOJABADO_00010 3.1e-67 NU mannosyl-glycoprotein
DOJABADO_00011 7.1e-104 S Putative ABC-transporter type IV
DOJABADO_00012 7.1e-273 S ABC transporter, ATP-binding protein
DOJABADO_00013 1.2e-46 M PFAM NLP P60 protein
DOJABADO_00014 3.6e-153 ABC-SBP S ABC transporter
DOJABADO_00015 1.3e-128 XK27_08840 U Belongs to the binding-protein-dependent transport system permease family
DOJABADO_00016 4.6e-124 XK27_08845 S ABC transporter, ATP-binding protein
DOJABADO_00018 1.2e-44 trxA O Belongs to the thioredoxin family
DOJABADO_00019 6e-116 terC P membrane
DOJABADO_00020 5.6e-116 rluA 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
DOJABADO_00021 2.8e-150 pacA 3.5.1.24 M Linear amide C-N hydrolase, choloylglycine hydrolase family protein
DOJABADO_00022 9.3e-98 corA P CorA-like Mg2+ transporter protein
DOJABADO_00023 1.2e-86 4.2.1.6 M Mandelate racemase muconate lactonizing enzyme
DOJABADO_00024 9.9e-92 6.3.1.20 H Lipoate-protein ligase
DOJABADO_00025 9.2e-88 S Protein of unknown function (DUF2974)
DOJABADO_00026 6e-112 rssA S Phospholipase, patatin family
DOJABADO_00027 3.2e-34 S Peptidase propeptide and YPEB domain
DOJABADO_00028 9e-245 asnS 6.1.1.22 J Asparaginyl-tRNA synthetase
DOJABADO_00029 3.1e-184 asnA 6.3.1.1 F aspartate--ammonia ligase
DOJABADO_00030 7.8e-73 folT S ECF transporter, substrate-specific component
DOJABADO_00031 1.3e-102 3.5.1.28 M N-acetylmuramoyl-L-alanine amidase
DOJABADO_00032 2.4e-161 gldA 1.1.1.6 C dehydrogenase
DOJABADO_00033 0.0 pepN 3.4.11.2 E aminopeptidase
DOJABADO_00034 2.4e-122 mleP3 S Membrane transport protein
DOJABADO_00035 2.1e-105 aroD S Serine hydrolase (FSH1)
DOJABADO_00036 4.1e-68 S Membrane
DOJABADO_00037 2.1e-177 L PFAM Integrase catalytic region
DOJABADO_00038 7.6e-209 pgaC GT2 M Glycosyl transferase
DOJABADO_00039 2.5e-54
DOJABADO_00040 4.4e-98 2.7.7.65 T GGDEF domain
DOJABADO_00041 2.8e-94 yhjH 3.1.4.52 T Putative diguanylate phosphodiesterase
DOJABADO_00042 7.5e-82 fat 3.1.2.21 I Acyl-ACP thioesterase
DOJABADO_00043 2.6e-131 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DOJABADO_00044 2.1e-39 yabA L Involved in initiation control of chromosome replication
DOJABADO_00045 1.2e-127 holB 2.7.7.7 L DNA polymerase III
DOJABADO_00046 9e-45 yaaQ S Cyclic-di-AMP receptor
DOJABADO_00047 8.8e-92 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DOJABADO_00048 6.2e-25 S Protein of unknown function (DUF2508)
DOJABADO_00049 1.6e-103 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DOJABADO_00050 1.5e-41 yaaK S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DOJABADO_00051 1.1e-227 dnaX 2.7.7.7 L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DOJABADO_00052 2.1e-72 tadA 3.5.4.33 F Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
DOJABADO_00053 1.1e-30 nrdH O Glutaredoxin
DOJABADO_00054 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DOJABADO_00055 1.8e-184 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DOJABADO_00056 1.3e-60 M domain protein
DOJABADO_00058 4.9e-63 mreD M rod shape-determining protein MreD
DOJABADO_00059 5.3e-89 glnP P ABC transporter permease
DOJABADO_00060 6.4e-101 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
DOJABADO_00061 1e-58 aatB ET ABC transporter substrate-binding protein
DOJABADO_00062 0.0 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
DOJABADO_00063 1.3e-106 dprA LU DNA protecting protein DprA
DOJABADO_00064 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DOJABADO_00065 1.6e-112 lacX 5.1.3.3 G Aldose 1-epimerase
DOJABADO_00066 1.1e-91 plsY 2.3.1.15, 3.5.1.104 I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
DOJABADO_00067 0.0 parE 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
DOJABADO_00068 0.0 parC 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
DOJABADO_00069 4.1e-33 racA K Domain of unknown function (DUF1836)
DOJABADO_00070 2.2e-57 F NUDIX domain
DOJABADO_00071 1.2e-161 ppaC 3.6.1.1 C inorganic pyrophosphatase
DOJABADO_00072 2e-213 pipD E Dipeptidase
DOJABADO_00073 8.3e-31
DOJABADO_00074 1.6e-19 EGP Major facilitator Superfamily
DOJABADO_00075 2.6e-56 EGP Major facilitator Superfamily
DOJABADO_00076 1.1e-192 EGP Major facilitator Superfamily
DOJABADO_00077 5.3e-52 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
DOJABADO_00078 2.5e-54 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
DOJABADO_00079 5.3e-139 gtf1 2.4.1.52 GT4 M An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
DOJABADO_00080 1.1e-224 argH 4.3.2.1 E argininosuccinate lyase
DOJABADO_00081 2e-214 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
DOJABADO_00083 9.1e-237 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DOJABADO_00084 1.5e-172 panE 1.1.1.169 H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DOJABADO_00085 0.0 xfp 4.1.2.22, 4.1.2.9 G Phosphoketolase
DOJABADO_00086 9.7e-75 T GHKL domain
DOJABADO_00087 1.6e-101 lexA 3.4.21.88 K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DOJABADO_00088 3.6e-33 ynzC S UPF0291 protein
DOJABADO_00089 4.6e-27 yneF S Uncharacterised protein family (UPF0154)
DOJABADO_00090 1.9e-99 plsC 2.3.1.51 I Acyltransferase
DOJABADO_00091 1.5e-114 yabB 2.1.1.223 L Methyltransferase small domain
DOJABADO_00092 2.2e-32 yazA L GIY-YIG catalytic domain protein
DOJABADO_00093 6.9e-139 rpsB J Belongs to the universal ribosomal protein uS2 family
DOJABADO_00094 1.3e-143 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DOJABADO_00095 4.7e-126 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
DOJABADO_00096 1.1e-85 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
DOJABADO_00097 4.7e-116 uppS 2.5.1.31 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DOJABADO_00098 7.4e-125 cdsA 2.7.7.41 I Belongs to the CDS family
DOJABADO_00099 7.1e-194 rseP 3.4.21.107, 3.4.21.116 M zinc metalloprotease
DOJABADO_00100 6e-297 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
DOJABADO_00101 0.0 polC 2.7.7.7 L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DOJABADO_00103 9.4e-110 rfbP 2.7.8.6 M Bacterial sugar transferase
DOJABADO_00104 2.3e-157 yfdH 2.4.2.53 GT2 M Glycosyltransferase, group 2 family protein
DOJABADO_00105 1.1e-43 cps1D M Domain of unknown function (DUF4422)
DOJABADO_00106 2.8e-16 M PFAM S-layer homology domain
DOJABADO_00107 1.8e-17 M Protein of unknown function (DUF3737)
DOJABADO_00108 1e-175 4.4.1.8 E Aminotransferase, class I
DOJABADO_00109 3.3e-147 mnaA 5.1.3.14 M UDP-N-acetylglucosamine 2-epimerase
DOJABADO_00110 2.1e-197 rlmL 2.1.1.173, 2.1.1.264 L Belongs to the methyltransferase superfamily
DOJABADO_00111 1e-121 C Aldo keto reductase
DOJABADO_00112 5.8e-14 gpsB D Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
DOJABADO_00113 2.8e-95 recX 2.4.1.337 GT4 S Regulatory protein RecX
DOJABADO_00114 2.7e-13
DOJABADO_00115 8.8e-18 S Protein of unknown function (DUF2922)
DOJABADO_00116 2.5e-113 yihY S Belongs to the UPF0761 family
DOJABADO_00117 4.3e-240 cysS 6.1.1.16, 6.3.1.13 J Belongs to the class-I aminoacyl-tRNA synthetase family
DOJABADO_00118 1.5e-65 mrnC J Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
DOJABADO_00119 1.3e-131 rlmB 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DOJABADO_00120 1.1e-54 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DOJABADO_00121 1.8e-84 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DOJABADO_00122 3.8e-24 rpmD J Ribosomal protein L30
DOJABADO_00123 8.4e-62 rplO J Binds to the 23S rRNA
DOJABADO_00124 1.4e-255 ybeC E amino acid
DOJABADO_00125 0.0 ydaO E amino acid
DOJABADO_00126 5.4e-24
DOJABADO_00127 2.2e-82 yvyE 3.4.13.9 S YigZ family
DOJABADO_00128 1.8e-48 comFA L Helicase C-terminal domain protein
DOJABADO_00129 4.3e-104 comFA L Helicase C-terminal domain protein
DOJABADO_00130 1.1e-65 comFC S Competence protein
DOJABADO_00131 7.4e-92 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DOJABADO_00132 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
DOJABADO_00133 1.9e-184 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DOJABADO_00134 2.4e-08 KT PspC domain protein
DOJABADO_00135 1.8e-38 yvlD S Mycobacterial 4 TMS phage holin, superfamily IV
DOJABADO_00136 1.5e-156 hprK F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
DOJABADO_00137 5.5e-123 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DOJABADO_00138 1.9e-157 gpsA 1.1.1.94 I Glycerol-3-phosphate dehydrogenase
DOJABADO_00139 5.1e-122 UW LPXTG-motif cell wall anchor domain protein
DOJABADO_00141 1.2e-275 2.7.7.6 M Peptidase family M23
DOJABADO_00142 7e-70 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DOJABADO_00143 1.9e-31 rpsJ J Involved in the binding of tRNA to the ribosomes
DOJABADO_00144 2e-185 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DOJABADO_00145 1.4e-25 S Addiction module antitoxin, RelB DinJ family
DOJABADO_00146 1.7e-42 ybaZ L 6-O-methylguanine DNA methyltransferase, DNA binding domain
DOJABADO_00147 3.8e-184 yxiO S Vacuole effluxer Atg22 like
DOJABADO_00148 2.1e-214 npp S type I phosphodiesterase nucleotide pyrophosphatase
DOJABADO_00149 8.9e-147 potE E amino acid
DOJABADO_00150 1e-214 E amino acid
DOJABADO_00151 1.9e-208 pipD E Dipeptidase
DOJABADO_00152 4e-188 yxjG_1 E methionine synthase, vitamin-B12 independent
DOJABADO_00153 5.6e-39 S Cytochrome B5
DOJABADO_00154 3.8e-96 1.1.1.193, 3.5.4.26 H RibD C-terminal domain
DOJABADO_00155 1.8e-47 yqkB S Belongs to the HesB IscA family
DOJABADO_00156 3.8e-101 K Transcriptional regulator
DOJABADO_00157 3.3e-40 lacA S transferase hexapeptide repeat
DOJABADO_00158 7.3e-143 S Hydrolases of the alpha beta superfamily
DOJABADO_00159 4.2e-105 S Alpha beta hydrolase
DOJABADO_00160 3e-139 brpA K Cell envelope-like function transcriptional attenuator common domain protein
DOJABADO_00161 6.1e-38 K Transcriptional regulator, HxlR family
DOJABADO_00162 3.4e-31
DOJABADO_00163 6.2e-147 L Transposase and inactivated derivatives IS30 family
DOJABADO_00164 3.9e-81
DOJABADO_00165 3.5e-109 dck 2.7.1.74 F deoxynucleoside kinase
DOJABADO_00166 7.6e-67 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
DOJABADO_00167 1.1e-70 GM NAD(P)H-binding
DOJABADO_00168 4.3e-142 akr5f 1.1.1.346 S reductase
DOJABADO_00169 4.7e-27 K Transcriptional regulator
DOJABADO_00170 6.7e-53 K Transcriptional regulator
DOJABADO_00171 1e-72 ydeN S Serine hydrolase
DOJABADO_00172 2e-189 lmrB EGP Major facilitator Superfamily
DOJABADO_00174 9.2e-48
DOJABADO_00175 9.9e-148 prmA J Ribosomal protein L11 methyltransferase
DOJABADO_00176 1.8e-91 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
DOJABADO_00177 2.6e-116 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
DOJABADO_00178 8.9e-32 purS 6.3.2.6, 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DOJABADO_00179 2.5e-113 purQ 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DOJABADO_00180 0.0 purL 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DOJABADO_00181 2.5e-259 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DOJABADO_00182 8.4e-153 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
DOJABADO_00183 1.5e-87 purN 2.1.2.2 F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DOJABADO_00184 1.9e-278 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
DOJABADO_00185 5.4e-202 purD 6.3.4.13 F Belongs to the GARS family
DOJABADO_00186 9.7e-09 S Domain of unknown function (DUF1707)
DOJABADO_00187 3.9e-130 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DOJABADO_00188 7.5e-125
DOJABADO_00189 3.5e-230 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DOJABADO_00190 1.7e-63 L Helix-turn-helix domain
DOJABADO_00191 6.4e-107 deoR K sugar-binding domain protein
DOJABADO_00192 1e-103 deoC 4.1.2.4, 5.4.2.8 F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DOJABADO_00193 4.9e-180 potD P ABC transporter
DOJABADO_00194 3.1e-118 potC P ABC transporter permease
DOJABADO_00195 3.8e-132 potB P ABC transporter permease
DOJABADO_00196 4.4e-184 potA 3.6.3.30, 3.6.3.31 P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
DOJABADO_00197 0.0 pepX 3.4.14.11 E Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
DOJABADO_00198 5.5e-164 pip 3.4.11.5 E Releases the N-terminal proline from various substrates
DOJABADO_00199 0.0 pacL 3.6.3.8 P P-type ATPase
DOJABADO_00200 1.3e-82 gph 3.1.3.18 S HAD hydrolase, family IA, variant
DOJABADO_00201 9.5e-148 L Transposase and inactivated derivatives IS30 family
DOJABADO_00202 9.3e-58 sufD O Uncharacterized protein family (UPF0051)
DOJABADO_00203 8.3e-105 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DOJABADO_00204 1.9e-11 M hydrolase, family 25
DOJABADO_00205 0.0 nrdD 1.1.98.6 F Ribonucleoside-triphosphate reductase
DOJABADO_00206 2.3e-213 pyrP F Permease
DOJABADO_00207 2.8e-123 atpB C it plays a direct role in the translocation of protons across the membrane
DOJABADO_00208 5.5e-72 tdh 1.1.1.14 C Zinc-binding dehydrogenase
DOJABADO_00209 9.3e-71 4.4.1.5 E Glyoxalase
DOJABADO_00210 2.3e-94 L Integrase
DOJABADO_00211 6.6e-129 rpsA 1.17.7.4 J Ribosomal protein S1
DOJABADO_00212 8.5e-235 der 1.1.1.399, 1.1.1.95 S GTPase that plays an essential role in the late steps of ribosome biogenesis
DOJABADO_00213 3.2e-91 S Calcineurin-like phosphoesterase superfamily domain
DOJABADO_00214 9.5e-71 yutD S Protein of unknown function (DUF1027)
DOJABADO_00215 1.9e-109 nagD 2.7.1.25, 3.1.3.41 G Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
DOJABADO_00216 2.1e-242 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DOJABADO_00217 1.1e-51 ylxM S Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
DOJABADO_00218 1.2e-161 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
DOJABADO_00219 3.1e-287 smc D Required for chromosome condensation and partitioning
DOJABADO_00220 8.6e-117 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
DOJABADO_00221 1.8e-32 acpP IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
DOJABADO_00222 2.2e-161 plsX 2.3.1.15 I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
DOJABADO_00223 0.0 recG 3.6.4.12 L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DOJABADO_00224 3.4e-268 yloV S DAK2 domain fusion protein YloV
DOJABADO_00225 2e-53 asp S Asp23 family, cell envelope-related function
DOJABADO_00226 4e-78 carB 6.3.5.5 F Belongs to the CarB family
DOJABADO_00227 5.6e-40 carB 6.3.5.5 F Belongs to the CarB family
DOJABADO_00228 2.2e-160 carA 6.3.5.5 F Belongs to the CarA family
DOJABADO_00229 4.2e-84 S Papain-like cysteine protease AvrRpt2
DOJABADO_00230 6.1e-105 glpF U Major intrinsic protein
DOJABADO_00231 2.3e-195 ydaM M Glycosyl transferase
DOJABADO_00233 3.1e-137 L hmm pf00665
DOJABADO_00234 2e-45 L Helix-turn-helix domain
DOJABADO_00236 3e-62 ribH 2.5.1.78 H Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
DOJABADO_00237 4.7e-184 ribBA 3.5.4.25, 4.1.99.12 H Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
DOJABADO_00238 3.1e-67 ribE 2.5.1.9, 3.5.4.25, 4.1.99.12 H Riboflavin synthase
DOJABADO_00239 3.7e-116 ribD 1.1.1.193, 3.5.4.26 H Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DOJABADO_00240 4.3e-75 proW P ABC transporter, permease protein
DOJABADO_00241 1.3e-113 proV E ABC transporter, ATP-binding protein
DOJABADO_00242 1.6e-93 proWZ P ABC transporter permease
DOJABADO_00243 1.1e-121 proX M ABC transporter, substrate-binding protein, QAT family
DOJABADO_00244 1.4e-56 K Transcriptional regulator
DOJABADO_00245 1.8e-124 1.6.5.2 GM NAD(P)H-binding
DOJABADO_00246 1.5e-83 lysR5 K LysR substrate binding domain
DOJABADO_00247 3.4e-109 brpA K Cell envelope-like function transcriptional attenuator common domain protein
DOJABADO_00248 2.5e-133 ypuA S Protein of unknown function (DUF1002)
DOJABADO_00249 4e-63 S PAS domain
DOJABADO_00250 6.4e-134 1.1.1.28 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DOJABADO_00251 1.9e-130 V domain protein
DOJABADO_00252 1.3e-67 K Transcriptional regulator (TetR family)
DOJABADO_00253 2.6e-149 galM 5.1.3.3 G Catalyzes the interconversion of alpha and beta anomers of maltose
DOJABADO_00254 3.6e-19 pspC KT PspC domain
DOJABADO_00255 2.1e-225 fucP G Major Facilitator Superfamily
DOJABADO_00256 6.4e-61 rbsD 5.4.99.62 G Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose
DOJABADO_00257 1.1e-102
DOJABADO_00258 7.7e-11 3.2.1.14 GH18
DOJABADO_00259 8e-60 zur P Belongs to the Fur family
DOJABADO_00260 2e-71 gmk2 2.7.4.8 F Guanylate kinase
DOJABADO_00261 1.3e-67 apfA 2.7.7.72, 3.6.1.61 F Nudix hydrolase
DOJABADO_00262 1.7e-217 yfnA E Amino Acid
DOJABADO_00263 2.4e-148 acm2 3.2.1.17 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
DOJABADO_00264 1.8e-11
DOJABADO_00265 2.5e-188 glyA 2.1.2.1 E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DOJABADO_00266 5.6e-95 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DOJABADO_00267 1.2e-161 yfeX P Peroxidase
DOJABADO_00268 1.7e-20 lsa S ABC transporter
DOJABADO_00269 4.1e-132 lsa S ABC transporter
DOJABADO_00270 7.4e-42 elaA S GNAT family
DOJABADO_00271 5.5e-95 I alpha/beta hydrolase fold
DOJABADO_00272 1.2e-156 MA20_14895 S Conserved hypothetical protein 698
DOJABADO_00273 5.6e-83 yeaE S Aldo/keto reductase family
DOJABADO_00274 6.8e-58 Q Methyltransferase
DOJABADO_00275 8.2e-101 ktrA P domain protein
DOJABADO_00276 5.5e-197 ktrB P Potassium uptake protein
DOJABADO_00277 0.0 mycA 4.2.1.53 S Myosin-crossreactive antigen
DOJABADO_00278 5.2e-55 S Alpha beta hydrolase
DOJABADO_00279 6.8e-102 S Type IV secretion-system coupling protein DNA-binding domain
DOJABADO_00280 2.8e-07
DOJABADO_00281 6.1e-41 L Terminase small subunit
DOJABADO_00282 4.6e-236 L Phage terminase, large subunit, PBSX family
DOJABADO_00283 3.4e-81 4.1.1.37 H Uroporphyrinogen decarboxylase (URO-D)
DOJABADO_00284 2.7e-52 3.6.3.21 E ABC transporter
DOJABADO_00285 8.3e-45 U Binding-protein-dependent transport system inner membrane component
DOJABADO_00286 1.7e-08 U ABC transporter, permease protein
DOJABADO_00287 1.8e-166 cycA E Amino acid permease
DOJABADO_00288 3.6e-20 K Bacterial regulatory proteins, tetR family
DOJABADO_00289 4.8e-100 lepB 3.4.21.89 U Belongs to the peptidase S26 family
DOJABADO_00290 6.9e-252 murE 6.3.2.13, 6.3.2.7 M Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DOJABADO_00291 0.0 asnB 6.3.5.4 E Asparagine synthase
DOJABADO_00292 0.0 gidA D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
DOJABADO_00293 8.7e-230 mnmE S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DOJABADO_00294 5.8e-69 jag S R3H domain protein
DOJABADO_00295 1.1e-118 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
DOJABADO_00296 2.1e-52 rnpA 3.1.26.5 J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
DOJABADO_00297 3.4e-14 rpmH J Belongs to the bacterial ribosomal protein bL34 family
DOJABADO_00298 1.9e-205 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DOJABADO_00299 4.5e-100 ahpC 1.11.1.15 O Peroxiredoxin
DOJABADO_00300 1.4e-258 trxB2 1.8.1.9 C Thioredoxin domain
DOJABADO_00301 1.1e-24
DOJABADO_00303 7.8e-88 yciB M ErfK YbiS YcfS YnhG
DOJABADO_00304 2.5e-146 yumC 1.18.1.2, 1.19.1.1, 1.8.1.9 C Ferredoxin--NADP reductase
DOJABADO_00305 6.2e-166 iunH2 3.2.2.1 F nucleoside hydrolase
DOJABADO_00306 1e-39 ygfC K transcriptional regulator (TetR family)
DOJABADO_00307 4.5e-90 S membrane transporter protein
DOJABADO_00308 3.5e-81 S ABC-type cobalt transport system, permease component
DOJABADO_00309 7.4e-136 cbiO1 S ABC transporter, ATP-binding protein
DOJABADO_00310 3.9e-71 P Cobalt transport protein
DOJABADO_00311 3.8e-38 yvlA
DOJABADO_00312 6e-240 yjcE P Sodium proton antiporter
DOJABADO_00313 3.1e-30 ypaA S Protein of unknown function (DUF1304)
DOJABADO_00314 2.4e-133 D Alpha beta
DOJABADO_00315 4.5e-65 K Transcriptional regulator
DOJABADO_00316 1.2e-133
DOJABADO_00317 8.2e-189 EGP Major facilitator Superfamily
DOJABADO_00318 8.1e-15
DOJABADO_00319 9.1e-50
DOJABADO_00320 2.3e-179 lplA 6.3.1.20 H Lipoate-protein ligase
DOJABADO_00321 6.1e-55 uspA T universal stress protein
DOJABADO_00322 6.6e-260 tetP J elongation factor G
DOJABADO_00324 2.5e-82 ybjI 3.1.3.102, 3.1.3.104, 3.1.3.23 G Sucrose-6F-phosphate phosphohydrolase
DOJABADO_00325 6.1e-123 GK ROK family
DOJABADO_00326 2.9e-169 brnQ U Component of the transport system for branched-chain amino acids
DOJABADO_00327 4.8e-69 ymdB S Macro domain protein
DOJABADO_00328 0.0 pepO 3.4.24.71 O Peptidase family M13
DOJABADO_00329 2.9e-34
DOJABADO_00330 4.5e-124 S Putative metallopeptidase domain
DOJABADO_00331 6.3e-141 3.1.3.1 S associated with various cellular activities
DOJABADO_00332 3.7e-95 mpg 3.2.2.21 L Belongs to the DNA glycosylase MPG family
DOJABADO_00333 2.7e-45 yeaO S Protein of unknown function, DUF488
DOJABADO_00334 8.3e-43
DOJABADO_00335 1.1e-94 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
DOJABADO_00336 2.2e-227 hisS 6.1.1.21 J histidyl-tRNA synthetase
DOJABADO_00337 2.7e-163 yttB EGP Major facilitator Superfamily
DOJABADO_00338 5.7e-72
DOJABADO_00339 1.5e-20
DOJABADO_00340 6.9e-90 scrR K Transcriptional regulator, LacI family
DOJABADO_00341 7.9e-19 spxA 1.20.4.1 K Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
DOJABADO_00342 1.9e-71 mecA NOT Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
DOJABADO_00343 5.2e-84 coiA 3.6.4.12 S Competence protein
DOJABADO_00344 5.6e-68 gmk 2.7.4.8 F Essential for recycling GMP and indirectly, cGMP
DOJABADO_00345 2.5e-30 rpoZ 2.7.7.6 K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
DOJABADO_00346 1.9e-148 coaBC 4.1.1.36, 6.3.2.5 H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DOJABADO_00347 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DOJABADO_00348 2.4e-146 fmt 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DOJABADO_00349 2.7e-175 sun 2.1.1.176 J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DOJABADO_00350 3.2e-98 stp 3.1.3.16 T phosphatase
DOJABADO_00351 1.5e-259 KLT serine threonine protein kinase
DOJABADO_00352 2.2e-133 rsgA 3.1.3.100 S One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
DOJABADO_00353 4.5e-112 rpe 5.1.3.1 G Belongs to the ribulose-phosphate 3-epimerase family
DOJABADO_00354 3.1e-81 thiN 2.7.6.2 H thiamine pyrophosphokinase
DOJABADO_00355 1.4e-157 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
DOJABADO_00356 1.2e-43
DOJABADO_00357 5.2e-20 yrvD S Pfam:DUF1049
DOJABADO_00358 7e-193 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
DOJABADO_00359 5.9e-33 gcvH E glycine cleavage
DOJABADO_00360 4.1e-212 rodA D Belongs to the SEDS family
DOJABADO_00361 2.6e-27 S Protein of unknown function (DUF2969)
DOJABADO_00362 9.6e-28 yidD S Could be involved in insertion of integral membrane proteins into the membrane
DOJABADO_00363 3.7e-166 mbl D Cell shape determining protein MreB Mrl
DOJABADO_00364 1.5e-186 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DOJABADO_00365 1.1e-25 ywzB S Protein of unknown function (DUF1146)
DOJABADO_00366 2.4e-53 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
DOJABADO_00367 1.7e-257 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DOJABADO_00368 2.2e-139 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DOJABADO_00369 2.2e-274 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DOJABADO_00370 7.7e-81 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DOJABADO_00371 4.5e-46 atpF C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DOJABADO_00372 5.4e-15 azlD E Branched-chain amino acid transport
DOJABADO_00373 1.2e-08 azlD E Branched-chain amino acid transport
DOJABADO_00374 1.8e-37 azlC E azaleucine resistance protein AzlC
DOJABADO_00375 5.8e-39 azlC E azaleucine resistance protein AzlC
DOJABADO_00376 4.8e-98 L transposase, IS605 OrfB family
DOJABADO_00377 1.6e-270 aspT P Predicted Permease Membrane Region
DOJABADO_00378 4.2e-119 racD 5.1.1.13 M Belongs to the aspartate glutamate racemases family
DOJABADO_00379 5.4e-111 gntR1 K UbiC transcription regulator-associated domain protein
DOJABADO_00380 5.4e-254 pncB 6.3.4.21 F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DOJABADO_00381 1.3e-127 nadE 6.3.1.5 F Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
DOJABADO_00382 0.0 yhgF K Tex-like protein N-terminal domain protein
DOJABADO_00383 1.3e-62 ydcK S Belongs to the SprT family
DOJABADO_00385 0.0 lacL 3.2.1.23 G Belongs to the glycosyl hydrolase 2 family
DOJABADO_00386 1.6e-142 lacM 3.2.1.23, 3.2.1.35, 3.2.1.51, 3.2.1.97 GH101,GH29 G beta-galactosidase
DOJABADO_00387 7.8e-129 C Zinc-binding dehydrogenase
DOJABADO_00388 4.1e-151 L Transposase
DOJABADO_00389 4.1e-224 S Bacterial membrane protein, YfhO
DOJABADO_00390 2.9e-55 C Flavodoxin
DOJABADO_00391 3.1e-116 K LysR substrate binding domain protein
DOJABADO_00392 6.4e-33
DOJABADO_00393 2.2e-150 L Helix-turn-helix domain
DOJABADO_00394 7.8e-53 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
DOJABADO_00395 2.8e-77 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DOJABADO_00396 6e-167 mdlB V ABC transporter
DOJABADO_00397 1.6e-172 mdlA V ABC transporter
DOJABADO_00398 1.2e-200 aadAT EK Aminotransferase, class I
DOJABADO_00399 1.2e-110 pepI 3.4.11.5, 3.5.1.101 E Releases the N-terminal proline from various substrates
DOJABADO_00400 6.3e-120 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
DOJABADO_00401 5.3e-69 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DOJABADO_00402 2.7e-94 nusG K Participates in transcription elongation, termination and antitermination
DOJABADO_00403 1.2e-11 secE U Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
DOJABADO_00404 7.9e-20 rpmG J Belongs to the bacterial ribosomal protein bL33 family
DOJABADO_00405 1.1e-43 yvrI K RNA polymerase sigma factor, sigma-70 family
DOJABADO_00406 1.5e-17 K Transcriptional regulator, HxlR family
DOJABADO_00407 2.8e-244 oppD EP Psort location Cytoplasmic, score
DOJABADO_00408 3.2e-96 murI 3.6.1.66, 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
DOJABADO_00409 6.9e-83 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DOJABADO_00410 2.7e-51 S Phosphoesterase
DOJABADO_00411 9.2e-59 ykuL S CBS domain
DOJABADO_00412 2.6e-112 3.1.3.102, 3.1.3.104, 3.1.3.23 S haloacid dehalogenase-like hydrolase
DOJABADO_00413 5.9e-115 ykuT M mechanosensitive ion channel
DOJABADO_00414 2.8e-12 WQ51_05790 S protein containing a divergent version of the methyl-accepting chemotaxis-like domain
DOJABADO_00415 1.5e-21
DOJABADO_00416 1.5e-138 ccpA K catabolite control protein A
DOJABADO_00417 2.8e-45
DOJABADO_00418 5.4e-117 yebC K Transcriptional regulatory protein
DOJABADO_00421 1.4e-21
DOJABADO_00423 8e-139 ytxK 2.1.1.72 L N-6 DNA Methylase
DOJABADO_00424 1.4e-34 ackA 2.7.2.1 F Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DOJABADO_00425 4.6e-218 nhaC C Na H antiporter NhaC
DOJABADO_00426 0.0 lacZ 3.2.1.23 G -beta-galactosidase
DOJABADO_00427 1.2e-296 lacS G Transporter
DOJABADO_00428 1.8e-131 lacR K Transcriptional regulator
DOJABADO_00429 1.2e-128 ltrA S Bacterial low temperature requirement A protein (LtrA)
DOJABADO_00430 7e-182 S FRG
DOJABADO_00431 3.6e-172 yrvN L AAA C-terminal domain
DOJABADO_00432 5.3e-164 mvaS 2.3.3.10 I Hydroxymethylglutaryl-CoA synthase
DOJABADO_00433 3e-85 rnhA 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DOJABADO_00434 6.1e-108 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DOJABADO_00435 2.3e-143 ylqF S Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
DOJABADO_00436 4.3e-30 yozE S Belongs to the UPF0346 family
DOJABADO_00437 1.4e-84 K helix_turn_helix, arabinose operon control protein
DOJABADO_00438 1.4e-81 S Membrane
DOJABADO_00439 2.3e-29 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DOJABADO_00440 4.9e-64 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DOJABADO_00441 1.1e-184 ftsA D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
DOJABADO_00442 1.3e-79 divIB D Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
DOJABADO_00443 1.9e-182 murG 2.4.1.227, 6.3.2.8 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DOJABADO_00444 5.8e-234 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DOJABADO_00445 6.2e-158 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DOJABADO_00446 4e-298 ftsI 3.4.16.4 M Penicillin-binding Protein
DOJABADO_00447 2.9e-28 ftsL D Cell division protein FtsL
DOJABADO_00448 8.3e-139 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
DOJABADO_00449 4.2e-58 mraZ K Belongs to the MraZ family
DOJABADO_00450 2e-166 tagE4 2.4.1.52 GT4 M Glycosyl transferases group 1
DOJABADO_00451 1.7e-123 scrR3 K Transcriptional regulator, LacI family
DOJABADO_00452 5.8e-30 S Sugar efflux transporter for intercellular exchange
DOJABADO_00453 7e-105 udk 2.7.1.48 F Cytidine monophosphokinase
DOJABADO_00454 5.6e-32 mltG S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DOJABADO_00456 2.4e-80 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DOJABADO_00457 5.1e-181 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DOJABADO_00458 6.9e-115 proB 2.7.2.11 F Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DOJABADO_00459 3.5e-277 uup S ABC transporter, ATP-binding protein
DOJABADO_00460 1.3e-100 rex K Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DOJABADO_00461 3.3e-43 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DOJABADO_00462 2.9e-285 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
DOJABADO_00463 2.6e-97 L Helix-turn-helix domain
DOJABADO_00464 1e-120 L hmm pf00665
DOJABADO_00465 2e-236 recN L May be involved in recombinational repair of damaged DNA
DOJABADO_00466 6.7e-54 argR K Regulates arginine biosynthesis genes
DOJABADO_00467 5.5e-102 rrmJ 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
DOJABADO_00468 0.0 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
DOJABADO_00469 8.1e-188 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DOJABADO_00470 2.7e-47 yodB K Transcriptional regulator, HxlR family
DOJABADO_00471 3.7e-85 XK27_09705 6.1.1.14 S Metal dependent phosphohydrolases with conserved 'HD' motif.
DOJABADO_00472 2.9e-118 spoU 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DOJABADO_00473 2.4e-22 acyP 3.6.1.7 C Belongs to the acylphosphatase family
DOJABADO_00474 2.6e-140 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
DOJABADO_00475 5.1e-45 def_1 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
DOJABADO_00476 7.6e-183 V MatE
DOJABADO_00477 8.8e-189 yjeM E Amino Acid
DOJABADO_00478 2.9e-74 ykhA 3.1.2.20 I Thioesterase superfamily
DOJABADO_00479 8.6e-62 lytE M LysM domain protein
DOJABADO_00480 3.8e-71 hsp O Belongs to the small heat shock protein (HSP20) family
DOJABADO_00481 1.3e-61 S Short repeat of unknown function (DUF308)
DOJABADO_00482 4.6e-16
DOJABADO_00483 8.3e-161 phoH T phosphate starvation-inducible protein PhoH
DOJABADO_00484 5.2e-65 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DOJABADO_00485 2.7e-46 dgkA 2.7.1.107, 2.7.1.66 M Diacylglycerol kinase
DOJABADO_00486 3.1e-159 era S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DOJABADO_00487 2.1e-111 recO L Involved in DNA repair and RecF pathway recombination
DOJABADO_00488 5.8e-175 glyQ 6.1.1.14 J glycyl-tRNA synthetase alpha subunit
DOJABADO_00489 0.0 glyS 6.1.1.14 J Glycyl-tRNA synthetase beta subunit
DOJABADO_00490 2.1e-239 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
DOJABADO_00491 1e-199 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
DOJABADO_00492 3.2e-133 IQ reductase
DOJABADO_00493 4.4e-88 acmC 3.2.1.96 NU mannosyl-glycoprotein
DOJABADO_00494 1.1e-90 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
DOJABADO_00495 4.2e-177 purK2 6.3.4.18 F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
DOJABADO_00496 1.4e-189 mepA V MATE efflux family protein
DOJABADO_00497 0.0 pcrA 3.6.4.12 L ATP-dependent DNA helicase
DOJABADO_00498 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DOJABADO_00499 2.6e-163 camS S sex pheromone
DOJABADO_00520 2.3e-181 S Tetratricopeptide repeat protein
DOJABADO_00521 1.4e-102 xerD L Phage integrase, N-terminal SAM-like domain
DOJABADO_00522 1.4e-170 cca 2.7.7.19, 2.7.7.72 J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
DOJABADO_00523 9e-302 yfmR S ABC transporter, ATP-binding protein
DOJABADO_00524 1.5e-175 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DOJABADO_00525 1.2e-56 folA 1.5.1.3 H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DOJABADO_00526 8.8e-91 hlyIII S protein, hemolysin III
DOJABADO_00527 1.2e-128 DegV S EDD domain protein, DegV family
DOJABADO_00528 6.5e-104 ypmR E lipolytic protein G-D-S-L family
DOJABADO_00529 2.8e-211 E Arginine ornithine antiporter
DOJABADO_00531 1.5e-121 cobQ S CobB/CobQ-like glutamine amidotransferase domain
DOJABADO_00532 4.5e-239 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Mur ligase, middle domain
DOJABADO_00533 1.7e-102 tdk 2.7.1.21 F thymidine kinase
DOJABADO_00534 3.8e-188 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DOJABADO_00535 1.8e-116 prmB 2.1.1.297, 2.1.1.298 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
DOJABADO_00536 1.1e-173 ywlC 2.7.7.87, 3.1.3.48 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
DOJABADO_00537 1.1e-113 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DOJABADO_00538 1e-140 yibE S overlaps another CDS with the same product name
DOJABADO_00539 1.9e-277 yfiC V ABC transporter
DOJABADO_00540 2.4e-272 lmrA V ABC transporter, ATP-binding protein
DOJABADO_00541 1.2e-26 K Winged helix DNA-binding domain
DOJABADO_00542 1.1e-31
DOJABADO_00544 1.9e-37
DOJABADO_00546 1.8e-44
DOJABADO_00547 1.5e-58 XK27_08875 O PFAM peptidase M10A and M12B, matrixin and adamalysin
DOJABADO_00548 1.1e-132 EG EamA-like transporter family
DOJABADO_00549 5.1e-131 arcC 2.7.2.2 E Belongs to the carbamate kinase family
DOJABADO_00550 6.5e-265 prfC J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DOJABADO_00551 6.6e-302 M NlpC/P60 family
DOJABADO_00552 5.2e-213
DOJABADO_00554 5.2e-10 G Peptidase family M23
DOJABADO_00555 1.8e-70 lacA 2.3.1.18, 2.3.1.79 S Maltose acetyltransferase
DOJABADO_00556 1.1e-94 ylbE GM NAD dependent epimerase dehydratase family protein
DOJABADO_00557 4.4e-239 pepC 3.4.22.40 E aminopeptidase
DOJABADO_00558 1.2e-106 mco Q Multicopper oxidase
DOJABADO_00559 1.2e-160 mco Q Multicopper oxidase
DOJABADO_00560 4.4e-39 K Transcriptional regulator
DOJABADO_00561 8.4e-181 EGP Major facilitator Superfamily
DOJABADO_00562 7.3e-66 K Transcriptional regulator, HxlR family
DOJABADO_00563 1.7e-103 GM NmrA-like family
DOJABADO_00564 2.1e-47 elaA S Gnat family
DOJABADO_00565 7.8e-80 6.1.1.7 J Threonine alanine tRNA ligase second additional domain protein
DOJABADO_00567 3.3e-199 uhpT EGP Major facilitator Superfamily
DOJABADO_00568 2.3e-160 scrR3 K Transcriptional regulator, LacI family
DOJABADO_00569 2.5e-213 gabT 2.6.1.19 E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DOJABADO_00570 9.7e-240 yfnA E amino acid
DOJABADO_00571 4.5e-88 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DOJABADO_00572 2.4e-76 S membrane transporter protein
DOJABADO_00573 3.8e-93 norA EGP Major facilitator Superfamily
DOJABADO_00574 1.2e-78 norA EGP Major facilitator Superfamily
DOJABADO_00575 7.4e-148 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
DOJABADO_00576 3.9e-28 cspA K Cold shock protein
DOJABADO_00577 9.2e-82 nudF 3.6.1.13 L ADP-ribose pyrophosphatase
DOJABADO_00579 5.7e-113 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DOJABADO_00580 6.3e-189 iscS 2.8.1.7 E Aminotransferase class V
DOJABADO_00581 8.6e-46 XK27_04120 S Putative amino acid metabolism
DOJABADO_00582 6.9e-217 mnmA 2.8.1.13 J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
DOJABADO_00583 1.8e-100 pgm6 5.4.2.11, 5.4.2.12 G phosphoglycerate mutase
DOJABADO_00584 2.3e-98 S Repeat protein
DOJABADO_00585 0.0 recD2 3.1.11.5 L DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
DOJABADO_00586 2.8e-150 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DOJABADO_00587 1.5e-174 yeaN P Transporter, major facilitator family protein
DOJABADO_00588 3.9e-51 S 3-demethylubiquinone-9 3-methyltransferase
DOJABADO_00589 5.6e-64 nrdI F Belongs to the NrdI family
DOJABADO_00590 1.5e-91 ypdB V (ABC) transporter
DOJABADO_00591 1.2e-49 1.14.14.47 GM epimerase
DOJABADO_00592 1.1e-50 M1-874 K Domain of unknown function (DUF1836)
DOJABADO_00593 1.5e-66 yybA 2.3.1.57 K Transcriptional regulator
DOJABADO_00594 5.6e-103 XK27_07210 6.1.1.6 S B3 4 domain
DOJABADO_00595 1.4e-17 T pyridoxamine 5'-phosphate
DOJABADO_00596 9.4e-118 S AI-2E family transporter
DOJABADO_00597 3.4e-120 3.2.1.52 GH20 G Xylose isomerase domain protein TIM barrel
DOJABADO_00598 5.8e-25
DOJABADO_00599 3.9e-126 nupG F Nucleoside transporter
DOJABADO_00600 2.9e-165 rihC 3.2.2.1 F Nucleoside
DOJABADO_00601 7e-132 fadB4 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase
DOJABADO_00602 1e-143 fadB4 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase
DOJABADO_00603 7.1e-106 rsmG 2.1.1.170 J Specifically methylates the N7 position of a guanine in 16S rRNA
DOJABADO_00604 6.6e-112 noc K Belongs to the ParB family
DOJABADO_00605 1.7e-118 soj D Sporulation initiation inhibitor
DOJABADO_00606 2e-123 spo0J K Belongs to the ParB family
DOJABADO_00607 1.6e-28 yyzM S Bacterial protein of unknown function (DUF951)
DOJABADO_00608 3.6e-194 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
DOJABADO_00609 4.5e-90 XK27_01040 S Protein of unknown function (DUF1129)
DOJABADO_00610 1.7e-32 pilD 3.4.23.43 NOU Bacterial Peptidase A24 N-terminal domain
DOJABADO_00611 2.7e-147 ykiI
DOJABADO_00612 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DOJABADO_00613 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DOJABADO_00614 0.0 relA 2.7.6.5 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DOJABADO_00615 1.4e-69 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
DOJABADO_00616 2.5e-134 yniA G Phosphotransferase enzyme family
DOJABADO_00617 0.0 aspS 6.1.1.12 J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
DOJABADO_00618 6.9e-132 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
DOJABADO_00619 2.4e-117 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
DOJABADO_00620 2.7e-216 glnPH2 P ABC transporter permease
DOJABADO_00621 1.1e-176 tsaD 2.3.1.234 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DOJABADO_00622 1.9e-74 rimI 2.3.1.128 K Ribosomal-protein-alanine acetyltransferase
DOJABADO_00623 1.1e-109 yeaZ 2.3.1.234 O Universal bacterial protein YeaZ
DOJABADO_00624 1.2e-34 fic D Fic/DOC family
DOJABADO_00626 2e-188 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
DOJABADO_00627 1.5e-127 ppx 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
DOJABADO_00628 0.0 ppk 2.7.4.1 P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DOJABADO_00629 4e-204 ppx3 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
DOJABADO_00630 3e-182 asd 1.2.1.11 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DOJABADO_00631 5.4e-112 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
DOJABADO_00632 2.8e-131 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DOJABADO_00633 1.3e-186 hipO 3.5.1.47 E Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
DOJABADO_00634 4.9e-59 dapD 2.3.1.117, 2.3.1.89 E Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
DOJABADO_00635 2.2e-214 lysA 4.1.1.19, 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
DOJABADO_00636 4.1e-216 lysC 2.7.2.4 E Belongs to the aspartokinase family
DOJABADO_00637 1.2e-135 dapF 5.1.1.7 E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DOJABADO_00638 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
DOJABADO_00639 3.2e-226 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DOJABADO_00640 5e-152 rnz 3.1.26.11 J Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
DOJABADO_00641 2e-128 XK27_05435 1.1.1.100 S Belongs to the short-chain dehydrogenases reductases (SDR) family
DOJABADO_00642 2e-271 recJ L Single-stranded-DNA-specific exonuclease RecJ
DOJABADO_00643 8.4e-85 apt 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DOJABADO_00644 6e-61
DOJABADO_00646 7.8e-42 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DOJABADO_00647 2.2e-122 T Calcineurin-like phosphoesterase superfamily domain
DOJABADO_00648 1.9e-189 EGP Major facilitator Superfamily
DOJABADO_00649 3.6e-187 mdtG EGP Major facilitator Superfamily
DOJABADO_00651 7.1e-200 yagE E amino acid
DOJABADO_00652 5.8e-13 gcvH E glycine cleavage
DOJABADO_00653 1.8e-154 L Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
DOJABADO_00654 2.4e-95 typA T GTP-binding protein TypA
DOJABADO_00655 1.8e-91 suhB 3.1.3.25 G Belongs to the inositol monophosphatase superfamily
DOJABADO_00656 3e-31 yktA S Belongs to the UPF0223 family
DOJABADO_00657 3.8e-244 lpdA 1.8.1.4 C Dehydrogenase
DOJABADO_00658 5.1e-187 pdhC 2.3.1.12 C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
DOJABADO_00659 5e-171 pdhB 1.2.4.1 C Transketolase, C-terminal domain protein
DOJABADO_00660 2e-203 pdhA 1.2.4.1, 1.2.4.4 C Dehydrogenase E1 component
DOJABADO_00661 2.5e-90 def 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
DOJABADO_00662 1.2e-160 yacL S domain protein
DOJABADO_00663 1.2e-239 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DOJABADO_00664 2.7e-86 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F dUTP diphosphatase
DOJABADO_00665 3.3e-36 HA62_12640 S GCN5-related N-acetyl-transferase
DOJABADO_00666 3.1e-111 rpiA 2.7.1.12, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DOJABADO_00667 6.2e-233 pepC 3.4.22.40 E Peptidase C1-like family
DOJABADO_00668 2.3e-127 I alpha/beta hydrolase fold
DOJABADO_00669 2.8e-112 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DOJABADO_00670 1.3e-152 mleP2 S Transporter, auxin efflux carrier (AEC) family protein
DOJABADO_00671 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
DOJABADO_00672 1.8e-199 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DOJABADO_00673 1.2e-65 tag 3.2.2.20 L glycosylase
DOJABADO_00674 7.4e-216 EGP Major facilitator Superfamily
DOJABADO_00675 3.8e-73 perR P Belongs to the Fur family
DOJABADO_00676 3e-206 cycA E Amino acid permease
DOJABADO_00677 7.4e-135 ribF 2.7.1.26, 2.7.7.2 H Belongs to the ribF family
DOJABADO_00678 1.1e-119 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DOJABADO_00679 5.9e-53 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DOJABADO_00680 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DOJABADO_00681 1.7e-35 ylxQ J ribosomal protein
DOJABADO_00682 9.1e-41 ylxR K Protein of unknown function (DUF448)
DOJABADO_00683 9.9e-185 nusA K Participates in both transcription termination and antitermination
DOJABADO_00684 6.1e-74 rimP J Required for maturation of 30S ribosomal subunits
DOJABADO_00685 7.7e-248 dtpT U amino acid peptide transporter
DOJABADO_00688 1.9e-296 ydgH S the current gene model (or a revised gene model) may contain a premature stop
DOJABADO_00689 4.4e-59
DOJABADO_00690 3.2e-139 EGP Major facilitator Superfamily
DOJABADO_00691 1.6e-28 EGP Major facilitator Superfamily
DOJABADO_00692 1.1e-210 yxbA 6.3.1.12 S ATP-grasp enzyme
DOJABADO_00693 4.8e-35 IQ KR domain
DOJABADO_00694 5.7e-43
DOJABADO_00695 3.7e-172 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
DOJABADO_00696 2.1e-60 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DOJABADO_00697 0.0 dnaK O Heat shock 70 kDa protein
DOJABADO_00698 2.4e-156 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
DOJABADO_00699 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
DOJABADO_00700 2.4e-161 recQ1 3.6.4.12 L ATP-dependent DNA helicase RecQ
DOJABADO_00701 2e-90 ypbB 5.1.3.1 S Helix-turn-helix domain
DOJABADO_00702 4e-75 U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
DOJABADO_00703 1.6e-105 rluB 5.4.99.19, 5.4.99.21, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
DOJABADO_00704 2e-77 scpB D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DOJABADO_00705 5.4e-83 scpA D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DOJABADO_00706 5.6e-40 ribT K COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
DOJABADO_00707 1.3e-88 xerD D recombinase XerD
DOJABADO_00708 7.2e-108 cvfB S S1 domain
DOJABADO_00709 4.7e-155 coaA 2.7.1.33 F Pantothenic acid kinase
DOJABADO_00710 3.3e-68 S cog cog1373
DOJABADO_00711 7.1e-97 tal 2.2.1.2 F Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DOJABADO_00712 1.1e-23 tpiA 2.7.2.3, 5.3.1.1 G Triosephosphate isomerase
DOJABADO_00713 5.5e-35 tkt 2.2.1.1 H Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DOJABADO_00714 1.2e-227 tkt 2.2.1.1 H Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DOJABADO_00716 6.4e-290 guaA 2.3.1.128, 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
DOJABADO_00717 1.3e-299 dxs 2.2.1.7 H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DOJABADO_00718 3.8e-200 N Uncharacterized conserved protein (DUF2075)
DOJABADO_00719 3.6e-83 S SNARE associated Golgi protein
DOJABADO_00720 3.2e-139 xth 3.1.11.2 L exodeoxyribonuclease III
DOJABADO_00721 2e-44 S Mazg nucleotide pyrophosphohydrolase
DOJABADO_00722 0.0 uvrA3 L excinuclease ABC, A subunit
DOJABADO_00723 1.6e-42 3.6.4.12 L Represses a number of genes involved in the response to DNA damage (SOS response)
DOJABADO_00725 5.3e-43 S Macro domain
DOJABADO_00726 3.5e-14 S Domain of unknown function (DUF4433)
DOJABADO_00727 2.7e-23 S Domain of unknown function (DUF4767)
DOJABADO_00730 1.6e-83 K Acetyltransferase (GNAT) domain
DOJABADO_00731 3.5e-109 S Alpha beta hydrolase
DOJABADO_00732 5.7e-75 magIII L Base excision DNA repair protein, HhH-GPD family
DOJABADO_00733 9.7e-120 gspA M family 8
DOJABADO_00734 1.1e-92 ypgQ S Metal dependent phosphohydrolases with conserved 'HD' motif.
DOJABADO_00736 6.9e-132 degV S EDD domain protein, DegV family
DOJABADO_00737 2.4e-274 FbpA K Fibronectin-binding protein
DOJABADO_00738 0.0 dinG 2.7.7.7, 3.6.4.12 L helicase involved in DNA repair and perhaps also replication
DOJABADO_00739 2.4e-114 mvk 1.1.1.88, 2.3.3.10, 2.7.1.36 I mevalonate kinase
DOJABADO_00740 4e-128 mvaD 4.1.1.33 I diphosphomevalonate decarboxylase
DOJABADO_00741 3.2e-190 mvaK2 2.7.1.36, 2.7.1.43, 2.7.4.2 I phosphomevalonate kinase
DOJABADO_00742 2.7e-127 fni 1.1.1.88, 5.3.3.2 C Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
DOJABADO_00743 6.5e-30 K DNA-templated transcription, initiation
DOJABADO_00744 2.8e-19
DOJABADO_00745 4.1e-49 thiE 2.5.1.3, 2.7.6.2, 5.4.2.6 S Haloacid dehalogenase-like hydrolase
DOJABADO_00746 5.6e-20
DOJABADO_00747 1.2e-264 glpK 2.7.1.30 F Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DOJABADO_00748 1.1e-23 dmpI 5.3.2.6 G Belongs to the 4-oxalocrotonate tautomerase family
DOJABADO_00749 2.6e-250 yjbQ P TrkA C-terminal domain protein
DOJABADO_00750 2.4e-251 pipD E Dipeptidase
DOJABADO_00751 2.7e-90
DOJABADO_00752 7.7e-96 yjjH S Calcineurin-like phosphoesterase
DOJABADO_00753 0.0 carB 6.3.5.5 F Carbamoyl-phosphate synthase
DOJABADO_00754 9.5e-179 carA 6.3.5.5 F Belongs to the CarA family
DOJABADO_00755 2.5e-148 rluD 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
DOJABADO_00756 5.1e-20 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DOJABADO_00757 2.5e-199 comEC S Competence protein ComEC
DOJABADO_00758 6.3e-116 holA 2.7.7.7 L DNA polymerase III delta subunit
DOJABADO_00759 2.8e-33 rpsT J Binds directly to 16S ribosomal RNA
DOJABADO_00760 3.5e-42 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DOJABADO_00761 6.6e-294 rnjB J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DOJABADO_00762 3.1e-58 S Tetratricopeptide repeat
DOJABADO_00763 7.9e-199 rsmF 2.1.1.176, 2.1.1.178 J NOL1 NOP2 sun family protein
DOJABADO_00764 1.3e-130 f42a O Band 7 protein
DOJABADO_00765 2.1e-236 lytS 2.7.13.3 T LytS YhcK-type transmembrane receptor domain protein
DOJABADO_00766 3.8e-83 lytT K response regulator receiver
DOJABADO_00767 4.5e-49 lrgA S LrgA family
DOJABADO_00768 3.2e-114 lrgB M LrgB-like family
DOJABADO_00769 2e-140 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
DOJABADO_00770 5.9e-158 glk 2.7.1.2 G Glucokinase
DOJABADO_00771 2.6e-57 yqhL P Rhodanese-like protein
DOJABADO_00772 4.8e-16 S Protein of unknown function (DUF3042)
DOJABADO_00773 5.6e-124 miaA 2.5.1.75 F Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DOJABADO_00774 5.3e-240 glnA 6.3.1.2 E glutamine synthetase
DOJABADO_00775 6.2e-282 gltX 6.1.1.17, 6.1.1.24 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DOJABADO_00776 1.3e-173 patA 2.6.1.1, 2.6.1.57 E Aminotransferase
DOJABADO_00777 1.7e-279 yhcA V ABC transporter, ATP-binding protein
DOJABADO_00778 2.7e-83 devA 3.6.3.25 V ABC transporter, ATP-binding protein
DOJABADO_00779 9.1e-118 hrtB V ABC transporter permease
DOJABADO_00780 2.3e-203 XK27_08315 M Sulfatase
DOJABADO_00781 0.0 S Bacterial membrane protein YfhO
DOJABADO_00782 5.3e-72 T Ion transport 2 domain protein
DOJABADO_00784 1.5e-29
DOJABADO_00785 8e-196 steT E amino acid
DOJABADO_00786 3.9e-19 pgi 5.3.1.9 G Belongs to the GPI family
DOJABADO_00787 1.2e-168 scrK 2.7.1.2, 2.7.1.4 GK ROK family
DOJABADO_00788 3.1e-74 4.4.1.5 E Glyoxalase
DOJABADO_00789 5.9e-191 tdh 1.1.1.14 C Zinc-binding dehydrogenase
DOJABADO_00791 1.2e-189 clcA P chloride
DOJABADO_00792 6.3e-173 napA P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
DOJABADO_00793 0.0 helD 3.6.4.12 L DNA helicase
DOJABADO_00794 6.5e-78 ndk 2.7.4.6 F Belongs to the NDK family
DOJABADO_00795 0.0 rafA 3.2.1.22 G alpha-galactosidase
DOJABADO_00797 8.2e-34 S Psort location Cytoplasmic, score
DOJABADO_00798 1.4e-209 dinB 2.7.7.7 L impB/mucB/samB family C-terminal domain
DOJABADO_00799 4.5e-183 trpS 6.1.1.2 J Belongs to the class-I aminoacyl-tRNA synthetase family
DOJABADO_00800 7.6e-153 ppx 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
DOJABADO_00801 7e-162 mvaA 1.1.1.34, 1.1.1.88, 2.3.1.9 C Belongs to the HMG-CoA reductase family
DOJABADO_00802 3.6e-150
DOJABADO_00803 2.6e-113 cobB K SIR2 family
DOJABADO_00804 2.9e-103 ET Bacterial periplasmic substrate-binding proteins
DOJABADO_00805 3e-101 yxeN U ABC transporter, permease protein
DOJABADO_00806 9.5e-89 P Binding-protein-dependent transport system inner membrane component
DOJABADO_00807 8.9e-96 tcyN 3.6.3.21 E ABC transporter
DOJABADO_00808 3.1e-136 4.1.1.37 H Uroporphyrinogen decarboxylase (URO-D)
DOJABADO_00810 3.4e-128 yunF F Protein of unknown function DUF72
DOJABADO_00811 0.0 metG 6.1.1.10 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DOJABADO_00812 3.2e-115 tatD L hydrolase, TatD family
DOJABADO_00813 4.2e-74 rnmV 3.1.26.8 J Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DOJABADO_00814 7e-140 ksgA 2.1.1.182 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
DOJABADO_00815 3.8e-21 veg S Biofilm formation stimulator VEG
DOJABADO_00816 1.2e-144 ispE 2.1.1.182, 2.7.1.148 F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DOJABADO_00817 1.3e-112 znuA P Belongs to the bacterial solute-binding protein 9 family
DOJABADO_00818 1.4e-89 fhuC P ABC transporter
DOJABADO_00819 7.8e-90 znuB U ABC 3 transport family
DOJABADO_00820 5.7e-136 purR 2.4.2.22, 2.4.2.7 F pur operon repressor
DOJABADO_00821 3.1e-219 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DOJABADO_00822 2.8e-166 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DOJABADO_00823 1.1e-34
DOJABADO_00824 1.9e-84 pva3 3.5.1.24 M Linear amide C-N hydrolase, choloylglycine hydrolase family protein
DOJABADO_00825 4.1e-118 yxeH S hydrolase
DOJABADO_00826 1.6e-239 ywfO S HD domain protein
DOJABADO_00827 2.3e-105 lipL 2.3.1.200, 2.3.1.204 H biotin lipoate A B protein ligase
DOJABADO_00828 2.6e-35 ywiB S Domain of unknown function (DUF1934)
DOJABADO_00829 7.6e-38 rpoE K Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
DOJABADO_00830 2.7e-299 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
DOJABADO_00831 9.9e-220 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DOJABADO_00832 2.7e-41 rpmE2 J Ribosomal protein L31
DOJABADO_00833 2.2e-113 pts13C G The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
DOJABADO_00834 1.7e-114 S Alpha/beta hydrolase of unknown function (DUF915)
DOJABADO_00835 1e-101 srtA 3.4.22.70 M sortase family
DOJABADO_00836 3e-57 ptpA 3.1.3.48 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DOJABADO_00837 3.9e-72 lemA S LemA family
DOJABADO_00838 1.8e-122 htpX O Belongs to the peptidase M48B family
DOJABADO_00839 4.1e-211 murF 6.3.2.10, 6.3.2.13 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
DOJABADO_00840 2.6e-235 cshA 3.6.4.13 F DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
DOJABADO_00841 2.5e-202 dltD M Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
DOJABADO_00842 9.1e-34 dltC 6.1.1.13 J Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
DOJABADO_00843 1.8e-202 dltB M MBOAT, membrane-bound O-acyltransferase family
DOJABADO_00844 4.5e-235 dltA 6.1.1.13 H Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
DOJABADO_00845 2.3e-44 acpS 2.7.6.3, 2.7.8.7, 5.1.1.1 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
DOJABADO_00846 9.4e-166 alr 5.1.1.1 E Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DOJABADO_00847 1.6e-220 U Belongs to the purine-cytosine permease (2.A.39) family
DOJABADO_00848 3.4e-225 codA 3.5.4.1 F cytosine deaminase
DOJABADO_00849 8.4e-121 G Belongs to the glycosyl hydrolase family 6
DOJABADO_00850 4.3e-99 S (CBS) domain
DOJABADO_00851 9.3e-98 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
DOJABADO_00852 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DOJABADO_00853 2e-34 yabO J S4 domain protein
DOJABADO_00854 5.2e-30 divIC D Septum formation initiator
DOJABADO_00855 2e-54 yabR J RNA binding
DOJABADO_00856 2.2e-132 tilS 2.4.2.8, 6.3.4.19 J Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
DOJABADO_00857 6.3e-75 hpt 2.4.2.8 F Belongs to the purine pyrimidine phosphoribosyltransferase family
DOJABADO_00858 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DOJABADO_00859 2.4e-154 hslO O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DOJABADO_00860 7.1e-181 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DOJABADO_00861 3.1e-273 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
DOJABADO_00862 0.0 dnaE 2.7.7.7 L DNA polymerase
DOJABADO_00863 4.6e-16 S Protein of unknown function (DUF2929)
DOJABADO_00864 3.1e-202 pepT 3.4.11.4 E Cleaves the N-terminal amino acid of tripeptides
DOJABADO_00865 5.4e-126 yqfO 3.5.4.16 S Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DOJABADO_00866 1.3e-76 trmK 2.1.1.217 S SAM-dependent methyltransferase
DOJABADO_00867 1.4e-123 ytbE 1.1.1.346 S Aldo keto reductase
DOJABADO_00868 4.1e-199 uhpT EGP Major facilitator Superfamily
DOJABADO_00869 3.3e-264 gtfA 2.4.1.7 GH13 G Sucrose glucosyltransferase
DOJABADO_00870 1.4e-237 ytjP 3.5.1.18 E Dipeptidase
DOJABADO_00871 1.5e-245 arcD S C4-dicarboxylate anaerobic carrier
DOJABADO_00872 6.8e-103 hipB K Helix-turn-helix
DOJABADO_00873 1e-43 yitW S Iron-sulfur cluster assembly protein
DOJABADO_00874 3.3e-261 sufB O assembly protein SufB
DOJABADO_00875 2.2e-68 nifU C SUF system FeS assembly protein, NifU family
DOJABADO_00876 3.3e-204 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DOJABADO_00877 2.3e-200 sufD O FeS assembly protein SufD
DOJABADO_00878 1e-137 sufC O FeS assembly ATPase SufC
DOJABADO_00879 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
DOJABADO_00880 2.7e-188 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
DOJABADO_00881 2.6e-51 radC L DNA repair protein
DOJABADO_00882 6e-172 mreB D cell shape determining protein MreB
DOJABADO_00883 7.4e-203 arcT 2.6.1.1 E Aminotransferase
DOJABADO_00884 5.1e-233 E Arginine ornithine antiporter
DOJABADO_00885 1.6e-109 pgm3 G phosphoglycerate mutase family
DOJABADO_00886 4.3e-29
DOJABADO_00887 0.0 ltaS 2.7.8.20 M Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
DOJABADO_00888 5e-53 2.3.1.128 K acetyltransferase
DOJABADO_00889 1e-177 S Putative peptidoglycan binding domain
DOJABADO_00890 3.8e-66 uspA T Belongs to the universal stress protein A family
DOJABADO_00891 2e-234 pepV 3.5.1.18 E dipeptidase PepV
DOJABADO_00892 1.7e-127 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DOJABADO_00893 3.3e-244 ytgP S Polysaccharide biosynthesis protein
DOJABADO_00894 1.9e-32
DOJABADO_00895 1.4e-22
DOJABADO_00896 3e-09 S Protein of unknown function (DUF4044)
DOJABADO_00897 4.3e-282 ftsK D Belongs to the FtsK SpoIIIE SftA family
DOJABADO_00898 2.2e-90 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
DOJABADO_00899 3.2e-113 rrmA 2.1.1.187 H Methyltransferase
DOJABADO_00900 1.8e-163 pgl 3.1.1.31 G Lactonase, 7-bladed beta-propeller
DOJABADO_00901 2.8e-20
DOJABADO_00902 3.5e-215 nhaC C Na H antiporter NhaC
DOJABADO_00903 2.1e-209 pbuX F xanthine permease
DOJABADO_00904 5.5e-240 pipD E Dipeptidase
DOJABADO_00905 9.5e-149 P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DOJABADO_00906 5.4e-165 galR K Transcriptional regulator
DOJABADO_00907 9e-78 dedA 3.1.3.1 S SNARE associated Golgi protein
DOJABADO_00908 2e-221 S amidohydrolase
DOJABADO_00909 2.1e-209 gltP U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
DOJABADO_00910 1.4e-70 K AsnC family
DOJABADO_00911 1.7e-73 uspA T universal stress protein
DOJABADO_00912 6.4e-150 iolS C Aldo keto reductase
DOJABADO_00913 5e-198 cycA E Amino acid permease
DOJABADO_00914 6.7e-128 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
DOJABADO_00915 3.4e-232 glnP P ABC transporter
DOJABADO_00916 2.1e-46 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DOJABADO_00917 4.7e-258 gatA 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
DOJABADO_00918 6.4e-260 gatB 6.1.1.12, 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DOJABADO_00919 8.7e-171 yegS 2.7.1.107 G Lipid kinase
DOJABADO_00920 6e-247 rumA 2.1.1.190 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DOJABADO_00921 1.1e-125
DOJABADO_00922 3.1e-37 S Uncharacterised protein conserved in bacteria (DUF2313)
DOJABADO_00923 9.8e-100 xkdT S Baseplate J-like protein
DOJABADO_00924 3.5e-30 S Protein of unknown function (DUF2634)
DOJABADO_00925 3e-23 S Protein of unknown function (DUF2577)
DOJABADO_00926 1.5e-100 G PFAM Phage late control gene D protein (GPD)
DOJABADO_00927 1.7e-46 3.1.3.6, 3.1.4.16 S Lysin motif
DOJABADO_00928 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
DOJABADO_00929 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
DOJABADO_00930 6.3e-59 ybbK S Protein of unknown function (DUF523)
DOJABADO_00931 4.6e-301 lacS G Transporter
DOJABADO_00932 6.4e-268 gnd 1.1.1.343, 1.1.1.44 H Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
DOJABADO_00933 2e-277 zwf 1.1.1.363, 1.1.1.49 G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DOJABADO_00934 7.8e-170 S peptidoglycan catabolic process
DOJABADO_00935 2.8e-27
DOJABADO_00936 4.9e-38 S Pfam:Phage_TAC_12
DOJABADO_00937 7.8e-79 S Phage major tail protein 2
DOJABADO_00938 1.5e-46
DOJABADO_00939 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DOJABADO_00940 1.7e-54 divIVA D DivIVA domain protein
DOJABADO_00941 1.3e-105 ylmH S S4 domain protein
DOJABADO_00942 1.5e-29 yggT S YGGT family
DOJABADO_00943 3.6e-38 sepF D Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
DOJABADO_00944 6.3e-29
DOJABADO_00945 8.5e-219 rarA L recombination factor protein RarA
DOJABADO_00946 9.6e-57 yueI S Protein of unknown function (DUF1694)
DOJABADO_00947 6.7e-128 S Membrane
DOJABADO_00948 5e-99 S Belongs to the UPF0246 family
DOJABADO_00949 5.7e-109 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DOJABADO_00950 0.0 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
DOJABADO_00951 1.5e-237 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DOJABADO_00952 4.9e-85 ybbR S YbbR-like protein
DOJABADO_00953 5.3e-137 dacA 2.7.7.85 S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DOJABADO_00954 3.1e-84 S Protein of unknown function (DUF1361)
DOJABADO_00955 1.1e-138 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DOJABADO_00956 7.7e-139 murB 1.3.1.98 M Cell wall formation
DOJABADO_00957 4.4e-89 dnaQ 2.7.7.7 L DNA polymerase III
DOJABADO_00958 1.4e-57 K Acetyltransferase (GNAT) domain
DOJABADO_00959 4.7e-71 ydiB 2.7.1.221, 5.1.1.1 O Hydrolase, P-loop family
DOJABADO_00960 6e-17
DOJABADO_00961 7.9e-161 pta 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
DOJABADO_00962 5.6e-124 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DOJABADO_00963 7.3e-74 yxjI
DOJABADO_00964 4.8e-79 smpB J the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
DOJABADO_00965 0.0 rnr J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
DOJABADO_00966 1.6e-95 est 3.1.1.1 S Serine aminopeptidase, S33
DOJABADO_00967 5.3e-34 secG U Preprotein translocase
DOJABADO_00968 3.5e-224 clcA P chloride
DOJABADO_00969 6.9e-235 yifK E Amino acid permease
DOJABADO_00970 3.5e-228 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DOJABADO_00971 2.2e-246 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
DOJABADO_00972 3.6e-113 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
DOJABADO_00973 3e-218 pgk 2.7.2.3, 5.3.1.1 F Belongs to the phosphoglycerate kinase family
DOJABADO_00974 4.5e-106 gap 1.2.1.12 G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
DOJABADO_00977 2.2e-154 sbcD L SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
DOJABADO_00978 1.2e-191 sbcC L Putative exonuclease SbcCD, C subunit
DOJABADO_00980 4.9e-14 P Belongs to the nlpA lipoprotein family
DOJABADO_00981 0.0 helD 3.6.4.12 L DNA helicase
DOJABADO_00982 8e-85 dedA S SNARE associated Golgi protein
DOJABADO_00983 7.6e-91 3.1.3.73 G phosphoglycerate mutase
DOJABADO_00984 3.3e-207 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DOJABADO_00985 1.7e-41 K LytTr DNA-binding domain
DOJABADO_00986 3.1e-20 S Protein of unknown function (DUF3021)
DOJABADO_00987 5.3e-127 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 G Responsible for synthesis of pseudouridine from uracil
DOJABADO_00988 1.5e-136 nadK 2.7.1.23 F Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DOJABADO_00989 5.3e-103 yjbM 2.7.6.5 S RelA SpoT domain protein
DOJABADO_00990 6e-69 yjbH Q Thioredoxin
DOJABADO_00991 1.4e-85 dnaD L DnaD domain protein
DOJABADO_00992 2.1e-131 EG EamA-like transporter family
DOJABADO_00993 5.2e-304 ponA 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein 1A
DOJABADO_00994 1.2e-101 recU L Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
DOJABADO_00995 1.2e-234 3.2.1.17 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
DOJABADO_00996 9.5e-158 rfbA 2.7.7.24 H Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DOJABADO_00997 5.7e-106 rfbC 5.1.3.13 M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
DOJABADO_00998 9.6e-189 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
DOJABADO_00999 2e-136 rfbD 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
DOJABADO_01000 1.4e-102 nfrA 1.5.1.38, 1.5.1.39 C nitroreductase
DOJABADO_01001 1.5e-137 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
DOJABADO_01002 1.8e-178 XK27_09615 S reductase
DOJABADO_01003 1.6e-79 nqr 1.5.1.36 S reductase
DOJABADO_01004 8.2e-228 rumA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DOJABADO_01005 3.6e-32 yneR
DOJABADO_01006 4.1e-274 malL 3.2.1.10 GH13 G Alpha amylase, catalytic domain protein
DOJABADO_01007 1.2e-179 tagE2 2.4.1.52 GT4 M Poly(Glycerol-phosphate) alpha-glucosyltransferase
DOJABADO_01008 4.4e-214 tagE3 2.4.1.52 GT4 M Glycosyl transferases group 1
DOJABADO_01009 2.6e-65
DOJABADO_01010 2.9e-88 pyrR 2.4.2.9 F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DOJABADO_01011 1.5e-53
DOJABADO_01012 5.2e-245 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DOJABADO_01013 5.4e-178 guaC 1.1.1.205, 1.7.1.7 F Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
DOJABADO_01014 1.2e-186 glpQ 3.1.4.46 C Membrane domain of glycerophosphoryl diester phosphodiesterase
DOJABADO_01015 6e-144 yvgN C Aldo keto reductase
DOJABADO_01016 6.5e-114 pgmB 2.4.1.64, 3.1.3.12, 3.2.1.28, 5.4.2.6 GH37,GH65 S beta-phosphoglucomutase
DOJABADO_01017 0.0 mapA 2.4.1.8 GH65 G hydrolase, family 65, central catalytic
DOJABADO_01018 9.3e-237 malT G Major Facilitator
DOJABADO_01019 1.4e-156 phbA 2.3.1.9 I Belongs to the thiolase family
DOJABADO_01020 1.3e-115 malR K Transcriptional regulator, LacI family
DOJABADO_01021 0.0 addA 3.6.4.12 L ATP-dependent helicase nuclease subunit A
DOJABADO_01022 0.0 rexB 3.1.21.3, 3.6.4.12 L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
DOJABADO_01023 6.8e-233 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DOJABADO_01024 1.8e-54 wecD3 K PFAM GCN5-related N-acetyltransferase
DOJABADO_01025 0.0 clpL O associated with various cellular activities
DOJABADO_01026 7.3e-31
DOJABADO_01027 7.6e-166 patA 2.6.1.1 E Aminotransferase
DOJABADO_01028 1.6e-148 ldhD 1.1.1.28 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DOJABADO_01029 3.1e-61 osmC O OsmC-like protein
DOJABADO_01030 1.3e-223 dhaT 1.1.1.1, 1.1.1.202 C Dehydrogenase
DOJABADO_01031 2.9e-72 S reductase
DOJABADO_01032 5.2e-81 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DOJABADO_01033 2.8e-56 pgpA 3.1.3.27 I Phosphatidylglycerophosphatase A
DOJABADO_01034 3.2e-178 htrA 3.4.21.107 O serine protease
DOJABADO_01035 2.4e-139 vicX 3.1.26.11 S domain protein
DOJABADO_01036 7.7e-88 yycI S YycH protein
DOJABADO_01037 1.5e-143 yycH S YycH protein
DOJABADO_01038 0.0 vicK 2.7.13.3 T Histidine kinase
DOJABADO_01039 2.1e-126 K response regulator
DOJABADO_01042 5.2e-93 K Transcriptional regulatory protein, C-terminal domain protein
DOJABADO_01043 1.3e-117 pstS P Phosphate
DOJABADO_01044 2.2e-125 pstC P probably responsible for the translocation of the substrate across the membrane
DOJABADO_01045 1.4e-140 pstA P Phosphate transport system permease protein PstA
DOJABADO_01046 5.8e-127 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
DOJABADO_01047 4e-106 phoU P Plays a role in the regulation of phosphate uptake
DOJABADO_01048 1.8e-127 S Polyphosphate nucleotide phosphotransferase, PPK2 family
DOJABADO_01049 1.4e-42
DOJABADO_01050 6.3e-160 yttB EGP Major facilitator Superfamily
DOJABADO_01051 1.3e-193 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
DOJABADO_01052 2.5e-61 rplI J Binds to the 23S rRNA
DOJABADO_01053 8.9e-308 yybT T signaling protein consisting of a modified GGDEF domain and a DHH domain
DOJABADO_01054 6.1e-148 S Amidohydrolase
DOJABADO_01055 2.1e-35 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DOJABADO_01056 3.7e-60 ssb L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
DOJABADO_01057 6.8e-47 rpsF J Binds together with S18 to 16S ribosomal RNA
DOJABADO_01058 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DOJABADO_01059 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DOJABADO_01060 6.9e-177 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DOJABADO_01061 3.8e-26 yaaA S S4 domain protein YaaA
DOJABADO_01062 2.3e-154 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
DOJABADO_01063 3.1e-216 rarA L recombination factor protein RarA
DOJABADO_01064 6.2e-129 I Alpha beta
DOJABADO_01065 1.2e-84 thiJ 2.7.11.1, 3.5.1.124 S DJ-1/PfpI family
DOJABADO_01066 4e-141 1.1.1.26 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DOJABADO_01067 0.0 mprF 2.3.2.3 S Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
DOJABADO_01069 1.9e-129 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
DOJABADO_01070 3e-72 S Domain of unknown function (DUF4811)
DOJABADO_01071 2.2e-239 lmrB EGP Major facilitator Superfamily
DOJABADO_01072 8.7e-38 merR K MerR HTH family regulatory protein
DOJABADO_01073 2e-29
DOJABADO_01074 0.0 rnjA J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DOJABADO_01075 1.5e-158 S CAAX protease self-immunity
DOJABADO_01076 1.2e-101 glnP P ABC transporter permease
DOJABADO_01077 5.8e-96 gluC P ABC transporter permease
DOJABADO_01078 1.8e-134 glnH ET ABC transporter
DOJABADO_01079 3.2e-122 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
DOJABADO_01080 3.3e-80 usp1 T Belongs to the universal stress protein A family
DOJABADO_01081 2e-94 S VIT family
DOJABADO_01082 3.8e-101 S membrane
DOJABADO_01083 1.3e-136 czcD P cation diffusion facilitator family transporter
DOJABADO_01084 3.2e-108 sirR K iron dependent repressor
DOJABADO_01085 4.5e-95 thrE S Putative threonine/serine exporter
DOJABADO_01086 7.6e-61 S Threonine/Serine exporter, ThrE
DOJABADO_01087 2.4e-100 lssY 3.6.1.27 I phosphatase
DOJABADO_01088 3.7e-09 2.3.1.128 J Acetyltransferase (GNAT) domain
DOJABADO_01089 6.3e-234 lysP E amino acid
DOJABADO_01090 2.5e-102 dak 2.7.1.74, 2.7.1.76 F deoxynucleoside kinase
DOJABADO_01096 1.8e-83 IQ reductase
DOJABADO_01097 1.5e-26
DOJABADO_01099 9.7e-70 thiE 2.5.1.3 H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
DOJABADO_01100 5.6e-120 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
DOJABADO_01101 3.7e-63 thiM 2.7.1.50 H Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
DOJABADO_01102 5.1e-122 C Oxidoreductase
DOJABADO_01103 1.6e-39 K Transcriptional regulator, HxlR family
DOJABADO_01104 1.7e-114 endA F DNA RNA non-specific endonuclease
DOJABADO_01105 1.2e-234 yifK E Amino acid permease
DOJABADO_01106 3e-152 Z012_10445 M tape measure
DOJABADO_01107 1.1e-47 S Phage XkdN-like tail assembly chaperone protein, TAC
DOJABADO_01108 1.4e-70 xkdM S Phage tail tube protein
DOJABADO_01109 4.4e-146 xkdK S Phage tail sheath protein beta-sandwich domain
DOJABADO_01110 2.8e-10
DOJABADO_01111 4.5e-160 map 3.4.11.18 E Methionine Aminopeptidase
DOJABADO_01112 3.7e-68 fld C Flavodoxin
DOJABADO_01113 1.2e-55 gtcA S Teichoic acid glycosylation protein
DOJABADO_01114 7e-145 mnaA 5.1.3.14 G Belongs to the UDP-N-acetylglucosamine 2-epimerase family
DOJABADO_01116 2.9e-190 yfmL 3.6.4.13 L DEAD DEAH box helicase
DOJABADO_01117 4.5e-18 mocA S Oxidoreductase
DOJABADO_01118 9.7e-136 mocA S Oxidoreductase
DOJABADO_01119 4.1e-54 S Domain of unknown function (DUF4828)
DOJABADO_01120 2.2e-62 yvdD 3.2.2.10 S Belongs to the LOG family
DOJABADO_01121 2.5e-111 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
DOJABADO_01122 6.5e-223 gshF 6.3.2.2 H Belongs to the glutamate--cysteine ligase type 1 family
DOJABADO_01123 1.5e-51 comEA L Competence protein ComEA
DOJABADO_01124 9.4e-168 ylbL T Belongs to the peptidase S16 family
DOJABADO_01125 8.2e-80 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DOJABADO_01126 2.6e-76 rsmD 2.1.1.171 L RNA methyltransferase, RsmD family
DOJABADO_01127 2.5e-30 ylbG S Uncharacterized protein conserved in bacteria (DUF2129)
DOJABADO_01128 3.3e-150 ftsW D Belongs to the SEDS family
DOJABADO_01129 5.4e-48 yceD S Uncharacterized ACR, COG1399
DOJABADO_01130 1.6e-22 rpmF J Belongs to the bacterial ribosomal protein bL32 family
DOJABADO_01131 1.1e-119 K response regulator
DOJABADO_01132 8.4e-207 arlS 2.7.13.3 T Histidine kinase
DOJABADO_01133 1.3e-242 yjeM E Amino Acid
DOJABADO_01134 0.0 ltaS 2.7.8.20 M Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
DOJABADO_01135 8.5e-47 silP 1.9.3.1, 3.6.3.54 S Cupredoxin-like domain
DOJABADO_01136 3e-22 silP 1.9.3.1, 3.6.3.54 S Cupredoxin-like domain
DOJABADO_01137 6.2e-266 copA 3.6.3.54 P P-type ATPase
DOJABADO_01138 7.3e-177 L Transposase IS66 family
DOJABADO_01140 7.9e-70 UW LPXTG-motif cell wall anchor domain protein
DOJABADO_01141 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DOJABADO_01143 3.2e-276 mntH P H( )-stimulated, divalent metal cation uptake system
DOJABADO_01144 3e-136 galU 2.7.7.9 M UTP-glucose-1-phosphate uridylyltransferase
DOJABADO_01145 7.3e-148 trxB 1.8.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
DOJABADO_01146 1.1e-102 3.6.4.12 S PD-(D/E)XK nuclease family transposase
DOJABADO_01147 0.0 pgm 5.4.2.2, 5.4.2.8 G Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
DOJABADO_01148 2e-178 adh 1.1.1.1, 1.1.1.14 E alcohol dehydrogenase
DOJABADO_01149 3.4e-113 K response regulator
DOJABADO_01150 7e-201 yclK 2.7.13.3 T Histidine kinase
DOJABADO_01151 6.2e-125 glcU U sugar transport
DOJABADO_01152 1.1e-163 cpoA GT4 M Glycosyltransferase, group 1 family protein
DOJABADO_01153 2.1e-184 mgs 2.4.1.337 GT4 M Glycosyltransferase, group 1 family protein
DOJABADO_01154 1.7e-235 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DOJABADO_01155 2.6e-160 L hmm pf00665
DOJABADO_01156 4.4e-100 L Helix-turn-helix domain
DOJABADO_01157 9.8e-75 XK27_08850 J Aminoacyl-tRNA editing domain
DOJABADO_01158 2.9e-138 S Oxidoreductase, aldo keto reductase family protein
DOJABADO_01159 8.3e-149 akr5f 1.1.1.346 S reductase
DOJABADO_01160 2.5e-97 K Transcriptional regulator
DOJABADO_01161 4.6e-148 ansA 3.5.1.1 EJ L-asparaginase, type I
DOJABADO_01162 1.6e-153 ezrA D modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
DOJABADO_01163 4e-196 iscS2 2.8.1.7 E Aminotransferase class V
DOJABADO_01164 1.9e-212 thiI 2.8.1.4 H Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DOJABADO_01165 0.0 S Peptidase, M23
DOJABADO_01166 3.3e-151 ymfF S Peptidase M16 inactive domain protein
DOJABADO_01167 1.4e-210 ymfH S Peptidase M16
DOJABADO_01168 3.2e-107 ymfM S Helix-turn-helix domain
DOJABADO_01169 3.8e-94 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DOJABADO_01170 3.3e-143 cinA 3.5.1.42 S Belongs to the CinA family
DOJABADO_01171 1.1e-174 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DOJABADO_01172 2e-190 rny S Endoribonuclease that initiates mRNA decay
DOJABADO_01173 0.0 mutS L that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DOJABADO_01174 4.1e-305 mutL L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DOJABADO_01175 3e-70 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
DOJABADO_01176 2.8e-169 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
DOJABADO_01177 5e-84 tgt_1 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
DOJABADO_01178 3.3e-19 yajC U Preprotein translocase
DOJABADO_01179 6.3e-160 gnd 1.1.1.343, 1.1.1.44 G Dehydrogenase
DOJABADO_01180 1.7e-160 nrnA 3.1.13.3, 3.1.3.7 S DHHA1 domain protein
DOJABADO_01181 4.2e-200 cshB 3.6.4.13 JKL DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
DOJABADO_01182 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DOJABADO_01183 1.7e-70 yqgF J Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DOJABADO_01184 3.5e-43 yrzB S Belongs to the UPF0473 family
DOJABADO_01185 1.3e-53 cvpA S Colicin V production protein
DOJABADO_01186 0.0 mutS2 L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
DOJABADO_01187 3e-45 trxA O Belongs to the thioredoxin family
DOJABADO_01188 6.2e-62 yslB S Protein of unknown function (DUF2507)
DOJABADO_01189 0.0 pbp2A 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
DOJABADO_01190 1.6e-67 hpt 2.4.2.8 F Belongs to the purine pyrimidine phosphoribosyltransferase family
DOJABADO_01191 8.6e-104 hemH 4.99.1.1, 4.99.1.9 H Catalyzes the ferrous insertion into protoporphyrin IX
DOJABADO_01192 1.6e-258 pipD E Dipeptidase
DOJABADO_01193 1.4e-76 ybaK J Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DOJABADO_01194 8.1e-118 gntR K UbiC transcription regulator-associated domain protein
DOJABADO_01195 2e-147 I transferase activity, transferring acyl groups other than amino-acyl groups
DOJABADO_01196 8.6e-152 dacA 3.4.16.4 M Belongs to the peptidase S11 family
DOJABADO_01197 1.3e-194 pipD M Peptidase family C69
DOJABADO_01198 4.6e-167 galM 5.1.3.3 G Catalyzes the interconversion of alpha and beta anomers of maltose
DOJABADO_01199 1.6e-08
DOJABADO_01200 1.6e-194 S Uncharacterized protein conserved in bacteria (DUF2252)
DOJABADO_01201 1.8e-146 L PFAM plasmid pRiA4b ORF-3 family protein
DOJABADO_01202 6.5e-185 adhA 1.1.1.1 C Zinc-binding alcohol dehydrogenase family protein
DOJABADO_01203 8e-92 ppiB 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DOJABADO_01204 1e-111 mleR K LysR family
DOJABADO_01205 3.4e-257 sfcA 1.1.1.38, 4.1.1.101 C Malic enzyme
DOJABADO_01206 6.4e-249 fumC 4.2.1.2 C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
DOJABADO_01207 7.6e-242 frdC 1.3.5.4 C FAD binding domain
DOJABADO_01208 5e-249 yflS P Sodium:sulfate symporter transmembrane region
DOJABADO_01209 4e-119 mleR K LysR family transcriptional regulator
DOJABADO_01210 1.9e-216 yjjP S Putative threonine/serine exporter
DOJABADO_01211 6.5e-90 ung2 3.2.2.27 L Uracil-DNA glycosylase
DOJABADO_01212 1.8e-228 emrY EGP Major facilitator Superfamily
DOJABADO_01213 1.6e-85 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
DOJABADO_01214 8.7e-119 metQ_4 P Belongs to the nlpA lipoprotein family
DOJABADO_01215 3e-141 EGP Major facilitator Superfamily
DOJABADO_01216 3.6e-25 rmaI K Transcriptional regulator
DOJABADO_01217 1.9e-12
DOJABADO_01218 3.8e-35 Z012_10445 S tape measure
DOJABADO_01219 1.5e-121 Z012_10445 S tape measure
DOJABADO_01220 5.5e-50 S Phage XkdN-like tail assembly chaperone protein, TAC
DOJABADO_01221 8.8e-73 xkdM S Phage tail tube protein
DOJABADO_01222 6.1e-148 xkdK S Phage tail sheath C-terminal domain
DOJABADO_01223 1e-52 yhdP S Transporter associated domain
DOJABADO_01224 2e-207 ubiB S ABC1 family
DOJABADO_01225 3.3e-57 E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
DOJABADO_01226 8.7e-31 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DOJABADO_01227 1.6e-31 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DOJABADO_01228 1.8e-262 galT 2.7.7.12 G UDP-glucose--hexose-1-phosphate uridylyltransferase
DOJABADO_01229 8.8e-215 galK 2.7.1.6 F Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DOJABADO_01230 6.1e-105 celE 3.2.1.4 GH5,GH9 E GDSL-like Lipase/Acylhydrolase family
DOJABADO_01231 5.2e-67 ptp3 3.1.3.48 T Tyrosine phosphatase family
DOJABADO_01232 1.2e-07 ptp3 3.1.3.48 T Tyrosine phosphatase family
DOJABADO_01233 7.7e-75 yxkA S Phosphatidylethanolamine-binding protein
DOJABADO_01234 1.4e-28
DOJABADO_01235 6.1e-71 ddaH 3.5.3.18 E Amidinotransferase
DOJABADO_01236 6.7e-27
DOJABADO_01237 7.2e-129
DOJABADO_01238 2.9e-66 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
DOJABADO_01239 3.9e-123 pnuC H nicotinamide mononucleotide transporter
DOJABADO_01240 2.8e-67 K response regulator
DOJABADO_01241 1.1e-84 T PhoQ Sensor
DOJABADO_01242 2e-111 macB2 V ABC transporter, ATP-binding protein
DOJABADO_01243 6e-221 ysaB V FtsX-like permease family
DOJABADO_01244 1.7e-100 metAA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to
DOJABADO_01245 7.5e-153 cysK 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
DOJABADO_01246 1.5e-227 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DOJABADO_01247 1.5e-35 XK27_08850 S Aminoacyl-tRNA editing domain
DOJABADO_01248 3.2e-159 bacI V MacB-like periplasmic core domain
DOJABADO_01249 1e-101 V ABC transporter
DOJABADO_01250 2.1e-77 bacG M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DOJABADO_01251 5.3e-43 S Sugar efflux transporter for intercellular exchange
DOJABADO_01252 4.4e-292 argS 6.1.1.19 J Arginyl-tRNA synthetase
DOJABADO_01253 5.1e-116 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
DOJABADO_01254 6.9e-130 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
DOJABADO_01255 3.1e-117 ecsA V ABC transporter, ATP-binding protein
DOJABADO_01256 3.4e-137 ecsB U ABC transporter
DOJABADO_01257 1.4e-105 trmB 2.1.1.297, 2.1.1.33 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
DOJABADO_01258 4.2e-45 ytzB S Small secreted protein
DOJABADO_01259 6.4e-43 ytpP 2.7.1.180, 5.3.4.1 CO Thioredoxin
DOJABADO_01260 9.7e-99 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
DOJABADO_01261 3e-232 mpl 6.3.2.4, 6.3.2.45, 6.3.2.8 M Belongs to the MurCDEF family
DOJABADO_01262 3.1e-98 ybhL S Belongs to the BI1 family
DOJABADO_01263 1.1e-79 yoaK S Protein of unknown function (DUF1275)
DOJABADO_01264 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DOJABADO_01265 9.2e-142 fpg 3.2.2.23, 4.2.99.18 L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
DOJABADO_01266 1.3e-57 coaE 2.7.1.24 F Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
DOJABADO_01267 1.7e-76 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DOJABADO_01268 1e-118 dnaB L replication initiation and membrane attachment
DOJABADO_01269 1.3e-120 dnaI L Primosomal protein DnaI
DOJABADO_01270 1.2e-83 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DOJABADO_01271 1.8e-27 rpmI J Belongs to the bacterial ribosomal protein bL35 family
DOJABADO_01272 2.2e-52 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DOJABADO_01273 1e-69 yqeG S HAD phosphatase, family IIIA
DOJABADO_01274 5.8e-184 yqeH S Ribosome biogenesis GTPase YqeH
DOJABADO_01275 7.6e-41 yhbY J RNA-binding protein
DOJABADO_01276 9.7e-83 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DOJABADO_01277 1e-92 nadD 2.7.6.3, 2.7.7.18 H Hydrolase, HD family
DOJABADO_01278 1.1e-54 rsfS J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
DOJABADO_01279 2.3e-91 yqeM Q Methyltransferase
DOJABADO_01280 1.7e-151 ylbM S Belongs to the UPF0348 family
DOJABADO_01281 3.4e-216 cadA 3.6.3.3, 3.6.3.5 P E1-E2 ATPase
DOJABADO_01282 4.6e-27 copZ P PFAM Heavy metal transport detoxification protein
DOJABADO_01283 3.6e-78 dps P Belongs to the Dps family
DOJABADO_01284 5.5e-78 rcfA 4.1.99.16, 4.2.3.22, 4.2.3.75 K Transcriptional regulator, Crp Fnr family
DOJABADO_01286 7.7e-73 infB UW LPXTG-motif cell wall anchor domain protein
DOJABADO_01287 7.4e-39 ysxB J Cysteine protease Prp
DOJABADO_01288 1.8e-44 rpmA J Belongs to the bacterial ribosomal protein bL27 family
DOJABADO_01289 1.4e-158 pepP 3.4.11.9, 3.4.13.9 E Creatinase/Prolidase N-terminal domain
DOJABADO_01290 3.4e-54 J 2'-5' RNA ligase superfamily
DOJABADO_01291 9.5e-53 yqhY S Asp23 family, cell envelope-related function
DOJABADO_01292 6.9e-14 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DOJABADO_01293 6.9e-108 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DOJABADO_01294 1.5e-165 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
DOJABADO_01295 1.4e-33 xseB 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
DOJABADO_01296 2.6e-123 ispA 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 H Belongs to the FPP GGPP synthase family
DOJABADO_01297 6.9e-26 gdh 1.4.1.4 S conserved protein
DOJABADO_01298 6.7e-43 ctsR K Belongs to the CtsR family
DOJABADO_01299 0.0 clpC O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
DOJABADO_01300 3.6e-79 K Bacterial regulatory proteins, tetR family
DOJABADO_01301 1.2e-55 lytE M Lysin motif
DOJABADO_01302 5.3e-118 XK27_02985 S Cof-like hydrolase
DOJABADO_01303 1.6e-45 K Transcriptional regulator
DOJABADO_01304 6.8e-171 oatA I Acyltransferase
DOJABADO_01305 1.4e-61 mltD CBM50 M NlpC P60 family protein
DOJABADO_01306 2.5e-16
DOJABADO_01307 2e-89 ytlR 2.7.1.91 I Diacylglycerol kinase catalytic
DOJABADO_01308 4.6e-29 ykzG S Belongs to the UPF0356 family
DOJABADO_01309 4.6e-46
DOJABADO_01310 1.3e-122 metQ1 P Belongs to the nlpA lipoprotein family
DOJABADO_01311 6.2e-167 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DOJABADO_01312 4.2e-92 metI P ABC transporter permease
DOJABADO_01313 1.6e-160 argE 3.5.1.18 E succinyl-diaminopimelate desuccinylase
DOJABADO_01314 9.3e-165 ldhA 1.1.1.28 C Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DOJABADO_01315 1.2e-11
DOJABADO_01316 7.3e-28 S NADPH-dependent FMN reductase
DOJABADO_01317 1.9e-248 cadA P P-type ATPase
DOJABADO_01318 4.6e-36 K Bacterial transcriptional regulator
DOJABADO_01319 2.4e-18 IQ Enoyl-(Acyl carrier protein) reductase
DOJABADO_01320 9.9e-47 IQ Dehydrogenase reductase
DOJABADO_01321 6.6e-56
DOJABADO_01322 6.8e-16
DOJABADO_01323 8.6e-53 asp S Asp23 family, cell envelope-related function
DOJABADO_01324 1.4e-61
DOJABADO_01325 9.1e-108 V ABC transporter, ATP-binding protein
DOJABADO_01326 7.7e-51 gntR1 K Transcriptional regulator, GntR family
DOJABADO_01327 1.6e-68 IQ Dehydrogenase
DOJABADO_01328 3.1e-23 MA20_42555 K Crp-like helix-turn-helix domain
DOJABADO_01329 0.0 L Helicase C-terminal domain protein
DOJABADO_01330 1.1e-39 3.1.3.27, 3.1.3.4, 3.1.3.81, 3.6.1.27 I PAP2 superfamily
DOJABADO_01331 1.1e-154 S Aldo keto reductase
DOJABADO_01332 2e-113 yicL EG EamA-like transporter family
DOJABADO_01333 4.1e-88 ycgJ Q ubiE/COQ5 methyltransferase family
DOJABADO_01334 7.1e-213 F Permease
DOJABADO_01335 3.1e-160 guaD 3.5.4.3 F Amidohydrolase family
DOJABADO_01337 2e-46 MA20_27270 S mazG nucleotide pyrophosphohydrolase
DOJABADO_01338 3.4e-90 engB D Necessary for normal cell division and for the maintenance of normal septation
DOJABADO_01339 2.7e-214 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DOJABADO_01340 5.2e-205 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
DOJABADO_01341 2.8e-48 yneR S Belongs to the HesB IscA family
DOJABADO_01342 0.0 S membrane
DOJABADO_01343 3.4e-17
DOJABADO_01344 0.0 clpE O Belongs to the ClpA ClpB family
DOJABADO_01345 2.2e-73 S Pfam:DUF3816
DOJABADO_01346 1.2e-73 K Acetyltransferase (GNAT) domain
DOJABADO_01347 1.4e-123 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
DOJABADO_01351 9.4e-143 deoR K sugar-binding domain protein
DOJABADO_01352 4.1e-201 guaB 1.1.1.205 F Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
DOJABADO_01354 2.8e-120 K response regulator
DOJABADO_01355 5e-183 hpk31 2.7.13.3 T Histidine kinase
DOJABADO_01356 1.5e-123 azlC E AzlC protein
DOJABADO_01357 1.6e-53 azlD S branched-chain amino acid
DOJABADO_01358 1.8e-141 hpaIM 2.1.1.72 L Belongs to the N(4) N(6)-methyltransferase family
DOJABADO_01359 8.1e-147 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
DOJABADO_01360 5.3e-189 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
DOJABADO_01361 1.1e-140 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
DOJABADO_01362 2.2e-107 pyrF 4.1.1.23 F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
DOJABADO_01363 3e-95 pyrE 2.4.2.10, 4.1.1.23 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DOJABADO_01364 4.8e-213 cfa 2.1.1.317, 2.1.1.79 M cyclopropane-fatty-acyl-phospholipid synthase
DOJABADO_01365 5.1e-129 K AI-2E family transporter
DOJABADO_01366 9.6e-300 fhs 6.3.4.3 F Belongs to the formate--tetrahydrofolate ligase family
DOJABADO_01367 2.3e-76 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DOJABADO_01368 1.8e-196 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DOJABADO_01369 3.4e-244 purB 4.3.2.2 F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DOJABADO_01370 8.5e-74 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DOJABADO_01371 3.1e-128 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
DOJABADO_01372 5.5e-243 yfnA E amino acid
DOJABADO_01373 3.1e-57 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
DOJABADO_01374 7e-34 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
DOJABADO_01375 6.6e-22 S Putative adhesin
DOJABADO_01376 5.1e-57 XK27_06920 S Protein of unknown function (DUF1700)
DOJABADO_01377 1.5e-42 K transcriptional regulator PadR family
DOJABADO_01378 1.1e-36
DOJABADO_01379 4.1e-176 adhP 1.1.1.1 C alcohol dehydrogenase
DOJABADO_01380 6.6e-102 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
DOJABADO_01381 1.2e-153 whiA K May be required for sporulation
DOJABADO_01382 8.8e-168 ybhK S Required for morphogenesis under gluconeogenic growth conditions
DOJABADO_01383 7.3e-134 rapZ S Displays ATPase and GTPase activities
DOJABADO_01384 4.6e-77 rarA L recombination factor protein RarA
DOJABADO_01385 2.7e-24 P nitrite transmembrane transporter activity
DOJABADO_01386 9.5e-85 EGP Major facilitator Superfamily
DOJABADO_01388 1.1e-48 UW LPXTG-motif cell wall anchor domain protein
DOJABADO_01389 7.4e-44 EGP Major facilitator Superfamily
DOJABADO_01390 1.2e-250 recQ 3.6.4.12 L ATP-dependent DNA helicase RecQ
DOJABADO_01391 1.3e-115 ytlR 2.7.1.91 I Diacylglycerol kinase catalytic
DOJABADO_01394 3.7e-78 E GDSL-like Lipase/Acylhydrolase family
DOJABADO_01395 1.6e-155 glsA 3.5.1.2 E Belongs to the glutaminase family
DOJABADO_01396 1.7e-63 C Flavodoxin
DOJABADO_01398 3e-18
DOJABADO_01400 2.4e-55 dut S Protein conserved in bacteria
DOJABADO_01401 1.4e-113
DOJABADO_01402 1.9e-113
DOJABADO_01403 6.7e-12
DOJABADO_01404 8.4e-126 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
DOJABADO_01405 4.8e-103 ecfT U Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DOJABADO_01406 1.1e-94 ecfA2 3.6.3.55 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DOJABADO_01407 1.6e-93 cbiO P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DOJABADO_01408 9.6e-58 kptA J Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
DOJABADO_01410 2.9e-50 hmpT S ECF-type riboflavin transporter, S component
DOJABADO_01411 3.6e-76 ywlG S Belongs to the UPF0340 family
DOJABADO_01412 2e-20

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)