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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	Description
DOMLJOKO_00001	3.8e-11
DOMLJOKO_00002	9.1e-91	kilA			K	BRO family, N-terminal domain
DOMLJOKO_00010	1.8e-20
DOMLJOKO_00012	1.1e-92				S	Bacteriophage Mu Gam like protein
DOMLJOKO_00013	1.5e-115				S	AAA domain
DOMLJOKO_00014	2e-83				S	Protein of unknown function (DUF669)
DOMLJOKO_00015	8.7e-130				S	Putative HNHc nuclease
DOMLJOKO_00016	5e-42				L	Helix-turn-helix domain
DOMLJOKO_00017	2.3e-45
DOMLJOKO_00018	3.7e-71				S	Transcriptional regulator, RinA family
DOMLJOKO_00024	1.2e-14				V	HNH nucleases
DOMLJOKO_00025	1.7e-85				L	HNH nucleases
DOMLJOKO_00026	1.6e-79				L	Phage terminase, small subunit
DOMLJOKO_00027	0.0				S	Phage Terminase
DOMLJOKO_00028	2.8e-25				S	Protein of unknown function (DUF1056)
DOMLJOKO_00029	1.8e-223				S	Phage portal protein
DOMLJOKO_00030	1.7e-126				S	Clp protease
DOMLJOKO_00031	1.8e-210				S	Phage capsid family
DOMLJOKO_00032	9.6e-50				S	Phage gp6-like head-tail connector protein
DOMLJOKO_00033	2.9e-57				S	Phage head-tail joining protein
DOMLJOKO_00034	2.8e-67				S	Bacteriophage HK97-gp10, putative tail-component
DOMLJOKO_00035	6.2e-61				S	Protein of unknown function (DUF806)
DOMLJOKO_00036	3.4e-107				S	Phage tail tube protein
DOMLJOKO_00037	5.3e-57				S	Phage tail assembly chaperone proteins, TAC
DOMLJOKO_00038	1.1e-18
DOMLJOKO_00039	0.0				M	Phage tail tape measure protein TP901
DOMLJOKO_00040	0.0				S	Phage tail protein
DOMLJOKO_00041	0.0				S	Phage minor structural protein
DOMLJOKO_00042	0.0
DOMLJOKO_00045	1.4e-55
DOMLJOKO_00046	2e-51				S	Phage tail protein
DOMLJOKO_00047	3e-191	lys			M	Glycosyl hydrolases family 25
DOMLJOKO_00048	1.3e-36				S	Haemolysin XhlA
DOMLJOKO_00049	3.2e-33	hol			S	Bacteriophage holin
DOMLJOKO_00051	4.5e-230	rodA			D	Cell cycle protein
DOMLJOKO_00052	0.0	opuAB			P	Binding-protein-dependent transport system inner membrane component
DOMLJOKO_00053	7.9e-143				P	ATPases associated with a variety of cellular activities
DOMLJOKO_00054	2.1e-221	lytR5			K	Cell envelope-related transcriptional attenuator domain
DOMLJOKO_00055	7.8e-100				L	Helix-turn-helix domain
DOMLJOKO_00056	9.9e-177	csbB	2.4.1.83	GT2	M	Glycosyltransferase like family 2
DOMLJOKO_00057	1.3e-66
DOMLJOKO_00058	1.1e-76
DOMLJOKO_00059	7.1e-217	mvaS	2.3.3.10		I	Hydroxymethylglutaryl-CoA synthase
DOMLJOKO_00060	5.4e-86
DOMLJOKO_00061	5.6e-115	lexA	3.4.21.88		K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DOMLJOKO_00062	2.9e-36	ynzC			S	UPF0291 protein
DOMLJOKO_00063	4.3e-33	yneF			S	Uncharacterised protein family (UPF0154)
DOMLJOKO_00064	6.4e-119	plsC	2.3.1.51		I	Acyltransferase
DOMLJOKO_00065	2.8e-137	yabB	2.1.1.223		L	Methyltransferase small domain
DOMLJOKO_00066	2e-49	yazA			L	GIY-YIG catalytic domain protein
DOMLJOKO_00067	2.3e-187	ldhA	1.1.1.28		CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DOMLJOKO_00068	4.7e-134				S	Haloacid dehalogenase-like hydrolase
DOMLJOKO_00069	6.5e-145	rpsB			J	Belongs to the universal ribosomal protein uS2 family
DOMLJOKO_00070	1.3e-151	tsf			J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DOMLJOKO_00071	2.2e-128	pyrH	2.7.4.22		F	Catalyzes the reversible phosphorylation of UMP to UDP
DOMLJOKO_00072	2.5e-82	frr			J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
DOMLJOKO_00073	1.8e-147	uppS	2.5.1.31		H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DOMLJOKO_00074	8.4e-137	cdsA	2.7.7.41		I	Belongs to the CDS family
DOMLJOKO_00075	9.5e-231	rseP	3.4.21.107, 3.4.21.116		M	zinc metalloprotease
DOMLJOKO_00076	0.0	proS	6.1.1.15		J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
DOMLJOKO_00077	0.0	polC	2.7.7.7		L	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DOMLJOKO_00078	4.2e-83	rimP			J	Required for maturation of 30S ribosomal subunits
DOMLJOKO_00079	3.3e-217	nusA			K	Participates in both transcription termination and antitermination
DOMLJOKO_00080	9.5e-49	ylxR			K	Protein of unknown function (DUF448)
DOMLJOKO_00081	1.1e-47	ylxQ			J	ribosomal protein
DOMLJOKO_00082	0.0	infB			J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DOMLJOKO_00083	4.6e-50	rbfA			J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DOMLJOKO_00084	1.4e-265	ydiN	5.4.99.5		G	Major Facilitator
DOMLJOKO_00085	9.3e-217	aroC	4.2.3.5		E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DOMLJOKO_00086	1e-93
DOMLJOKO_00087	2e-236	aroA	1.3.1.12, 1.3.1.43, 2.5.1.19		E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
DOMLJOKO_00088	1.9e-195	tyrA	1.3.1.12, 1.3.1.43		E	prephenate dehydrogenase
DOMLJOKO_00089	2.4e-87	aroK	1.1.1.25, 2.7.1.71, 4.2.1.10, 4.2.3.4		F	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DOMLJOKO_00090	9.4e-172	truB	5.4.99.25		J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DOMLJOKO_00091	1.2e-188	ribF	2.7.1.26, 2.7.7.2		H	Belongs to the ribF family
DOMLJOKO_00092	7.3e-132	budA	4.1.1.5		Q	Alpha-acetolactate decarboxylase
DOMLJOKO_00093	2.4e-195	hrcA			K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
DOMLJOKO_00094	1.5e-80	grpE			O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DOMLJOKO_00095	0.0	dnaK			O	Heat shock 70 kDa protein
DOMLJOKO_00096	1.2e-184	dnaJ			O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
DOMLJOKO_00097	4.4e-198	pbpX2			V	Beta-lactamase
DOMLJOKO_00098	8.8e-19	dltX			S	D-Ala-teichoic acid biosynthesis protein
DOMLJOKO_00099	7e-297	dltA	6.1.1.13		H	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
DOMLJOKO_00100	8.7e-234	dltB			M	MBOAT, membrane-bound O-acyltransferase family
DOMLJOKO_00101	2.4e-34	dltC	6.1.1.13		J	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
DOMLJOKO_00102	3e-245	dltD			M	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
DOMLJOKO_00103	0.0	lepA			M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
DOMLJOKO_00104	1.4e-49
DOMLJOKO_00105	1.4e-49
DOMLJOKO_00106	3.6e-114	mpg	3.2.2.21		L	Belongs to the DNA glycosylase MPG family
DOMLJOKO_00107	4.5e-177	prmA			J	Ribosomal protein L11 methyltransferase
DOMLJOKO_00108	2.9e-134	rsmE	2.1.1.193		J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
DOMLJOKO_00109	9.6e-58
DOMLJOKO_00110	0.0	relA	2.7.6.5		KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DOMLJOKO_00111	8.5e-78	dtd			J	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
DOMLJOKO_00112	1.8e-113		3.1.3.18		J	HAD-hyrolase-like
DOMLJOKO_00113	4.6e-165	yniA			G	Fructosamine kinase
DOMLJOKO_00114	1.9e-155	lytH	3.5.1.28		M	N-acetylmuramoyl-L-alanine amidase
DOMLJOKO_00115	2.2e-243	hisS	6.1.1.21		J	histidyl-tRNA synthetase
DOMLJOKO_00116	0.0	aspS	6.1.1.12		J	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)

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