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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	Description
PAKALCKH_00001	1.1e-119				K	Peptidase S24-like
PAKALCKH_00002	1e-156				E	IrrE N-terminal-like domain
PAKALCKH_00003	1.5e-28
PAKALCKH_00004	7.9e-164
PAKALCKH_00005	3.1e-66	pdxH			S	pyridoxamine 5'-phosphate oxidase
PAKALCKH_00006	1.9e-53				K	sequence-specific DNA binding
PAKALCKH_00008	1.5e-49
PAKALCKH_00009	2.1e-79
PAKALCKH_00010	0.0	ydcQ			D	Ftsk spoiiie family protein
PAKALCKH_00011	1e-242				K	Replication initiation factor
PAKALCKH_00012	5.9e-38
PAKALCKH_00013	9.6e-95
PAKALCKH_00014	1.2e-175				S	Conjugative transposon protein TcpC
PAKALCKH_00015	6.5e-34
PAKALCKH_00016	1.7e-72				S	TcpE family
PAKALCKH_00017	0.0	yddE			S	AAA-like domain
PAKALCKH_00018	0.0
PAKALCKH_00019	7.2e-33
PAKALCKH_00020	2.2e-207	isp2			S	pathogenesis
PAKALCKH_00021	1.5e-37				S	MerR HTH family regulatory protein
PAKALCKH_00022	1.4e-234	sip			L	Phage integrase, N-terminal SAM-like domain
PAKALCKH_00023	7e-139				KLT	Protein tyrosine kinase
PAKALCKH_00024	1.7e-57				KLT	Protein tyrosine kinase
PAKALCKH_00025	3.4e-94	tnp*			L	An automated process has identified a potential problem with this gene model
PAKALCKH_00026	3.7e-125	ribD	1.1.1.193, 3.5.4.26		L	Transposase DDE domain
PAKALCKH_00027	8.4e-60	fruR			K	transcriptional
PAKALCKH_00028	2.2e-35	pfkB	2.7.1.11, 2.7.1.56		H	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PAKALCKH_00029	5.4e-162				T	Diguanylate cyclase
PAKALCKH_00031	1.1e-147		2.4.1.83	GT2	M	COG0463, glycosyltransferases involved in cell wall biogenesis
PAKALCKH_00032	0.0	bcsA	2.4.1.12	GT2	M	COG1215 Glycosyltransferases, probably involved in cell wall biogenesis
PAKALCKH_00033	0.0
PAKALCKH_00038	7e-115	nudL			L	hydrolase
PAKALCKH_00039	6.3e-54				K	transcriptional regulator, PadR family
PAKALCKH_00040	8.6e-62	XK27_06920			S	Protein of unknown function (DUF1700)
PAKALCKH_00041	4.4e-107				S	Putative adhesin
PAKALCKH_00042	7.3e-160	XK27_06930			V	domain protein
PAKALCKH_00043	2.4e-95	XK27_06935			K	transcriptional regulator
PAKALCKH_00044	2e-53	ypaA			M	Membrane
PAKALCKH_00045	1.9e-10
PAKALCKH_00046	1.7e-108	rpsD			J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PAKALCKH_00047	1.8e-47	veg			S	Biofilm formation stimulator VEG
PAKALCKH_00048	6.5e-246	dnaB	3.6.4.12		L	Participates in initiation and elongation during chromosome replication
PAKALCKH_00049	2.2e-73	rplI			J	binds to the 23S rRNA
PAKALCKH_00050	0.0	yybT			T	signaling protein consisting of a modified GGDEF domain and a DHH domain
PAKALCKH_00051	0.0	gidA			D	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
PAKALCKH_00052	2.1e-98	yvbG			U	UPF0056 membrane protein
PAKALCKH_00053	2.1e-218	mnmA	2.8.1.13		J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
PAKALCKH_00054	2.4e-311				S	Bacterial membrane protein, YfhO
PAKALCKH_00055	1.5e-65	isaA		GH23	M	Immunodominant staphylococcal antigen A
PAKALCKH_00056	1.2e-60	lytE			M	LysM domain protein
PAKALCKH_00057	4.8e-132	ecfT			P	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAKALCKH_00058	8.4e-151	ecfA2	3.6.3.55		P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAKALCKH_00059	2.7e-149	ecfA1			P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAKALCKH_00060	2.6e-89	pgsA	2.7.8.41, 2.7.8.5		I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PAKALCKH_00061	7.8e-128				S	sequence-specific DNA binding
PAKALCKH_00062	2e-233	ymfH			S	Peptidase M16
PAKALCKH_00063	7.4e-228	ymfF			S	Peptidase M16
PAKALCKH_00064	6.4e-58	yaaA			S	S4 domain protein YaaA
PAKALCKH_00065	7.5e-200	recF			L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PAKALCKH_00066	1.1e-273	guaB	1.1.1.205		F	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
PAKALCKH_00067	0.0	lpdA	1.8.1.4		C	Dehydrogenase
PAKALCKH_00068	2.7e-207	acoC	2.3.1.12		C	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
PAKALCKH_00069	1.9e-181	acoB	1.2.4.1, 1.2.4.4		C	COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
PAKALCKH_00070	6.6e-184	acoA	1.2.4.1, 1.2.4.4		C	Dehydrogenase E1 component
PAKALCKH_00071	4.2e-207	hpk9	2.7.13.3		T	protein histidine kinase activity
PAKALCKH_00072	1.8e-224		2.7.13.3		T	protein histidine kinase activity
PAKALCKH_00073	3.3e-166				S	the current gene model (or a revised gene model) may contain a frame shift
PAKALCKH_00074	9.1e-234	pyrC	3.5.2.3		F	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
PAKALCKH_00075	3.5e-120	ung	3.2.2.27		L	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PAKALCKH_00076	7.3e-217	yeaB			K	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PAKALCKH_00077	7.4e-250	dacA1	3.4.16.4		M	Belongs to the peptidase S11 family
PAKALCKH_00078	5e-182	dacA1	3.4.16.4		M	Belongs to the peptidase S11 family
PAKALCKH_00079	2.3e-156	rssA			S	Phospholipase, patatin family
PAKALCKH_00080	1.1e-99	estA			E	Lysophospholipase L1 and related esterases
PAKALCKH_00081	1.8e-287				S	unusual protein kinase
PAKALCKH_00082	4.9e-39				S	granule-associated protein
PAKALCKH_00083	2e-285	bglH	3.2.1.86	GT1	G	Belongs to the glycosyl hydrolase 1 family
PAKALCKH_00084	8.8e-196				S	hmm pf01594
PAKALCKH_00085	2.6e-106				G	Belongs to the phosphoglycerate mutase family
PAKALCKH_00086	1.8e-107				G	Belongs to the phosphoglycerate mutase family
PAKALCKH_00087	4.8e-108	pgm			G	Belongs to the phosphoglycerate mutase family
PAKALCKH_00088	9.4e-139	supH	3.1.3.102, 3.1.3.104		S	Sucrose-6F-phosphate phosphohydrolase
PAKALCKH_00090	1.9e-176	wbbI			M	transferase activity, transferring glycosyl groups
PAKALCKH_00091	2.7e-185	sacB		GT2,GT4	M	Stealth protein CR2, conserved region 2
PAKALCKH_00092	7.4e-216	glf	5.4.99.9		M	UDP-galactopyranose mutase
PAKALCKH_00093	8.3e-244	epsU			S	Polysaccharide biosynthesis protein
PAKALCKH_00094	1.2e-126	cps3F
PAKALCKH_00095	3.5e-170				M	Glycosyltransferase like family 2
PAKALCKH_00096	4e-165
PAKALCKH_00097	3.4e-120	Z012_10770			M	Domain of unknown function (DUF1919)
PAKALCKH_00098	4.4e-211	wcoF			M	Glycosyltransferase, group 1 family protein
PAKALCKH_00099	9e-220	rgpAc		GT4	M	group 1 family protein
PAKALCKH_00100	4.2e-253	cpsE			M	Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
PAKALCKH_00101	5.9e-116	cpsD			D	COG0489 ATPases involved in chromosome partitioning
PAKALCKH_00102	3.5e-110	cps4C			M	biosynthesis protein
PAKALCKH_00103	6.8e-133	cpsB	3.1.3.48		GM	Capsular polysaccharide biosynthesis protein
PAKALCKH_00104	9.4e-251	cps4A			K	Cell envelope-like function transcriptional attenuator common domain protein
PAKALCKH_00105	4e-130	deoD	2.4.2.1, 2.4.2.28		F	purine nucleoside phosphorylase
PAKALCKH_00106	6.7e-133	yfeJ	6.3.5.2		F	glutamine amidotransferase
PAKALCKH_00107	3.1e-170	clcA_2			P	Chloride transporter, ClC family
PAKALCKH_00108	7.5e-149	punA	2.4.2.1		F	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PAKALCKH_00109	1.4e-95				S	Protein of unknown function (DUF1697)
PAKALCKH_00110	2.1e-232	deoB	5.4.2.7		G	Phosphotransfer between the C1 and C5 carbon atoms of pentose
PAKALCKH_00111	5.6e-121	rpiA	2.7.1.12, 2.7.1.15, 5.3.1.6		G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PAKALCKH_00112	8.2e-252				V	Glucan-binding protein C
PAKALCKH_00113	4.2e-226				V	Glucan-binding protein C
PAKALCKH_00114	1.3e-79	hmpT			S	cog cog4720
PAKALCKH_00115	5.3e-136	thiD	2.7.1.35, 2.7.1.49, 2.7.4.7		H	phosphomethylpyrimidine kinase
PAKALCKH_00116	2.2e-139	truA	5.4.99.12		J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
PAKALCKH_00117	4.2e-193	dnaJ			O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
PAKALCKH_00118	1.1e-301	dnaK			O	Heat shock 70 kDa protein
PAKALCKH_00119	6.3e-64	grpE			O	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PAKALCKH_00120	1.4e-184	hrcA			K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
PAKALCKH_00121	7.2e-101	acmA	3.2.1.17, 3.4.17.14, 3.5.1.28		NU	Muramidase (Flagellum-specific)
PAKALCKH_00122	1e-137	vanY	3.4.17.14		M	D-alanyl-D-alanine carboxypeptidase
PAKALCKH_00123	7.3e-132	ais			G	Phosphoglycerate mutase
PAKALCKH_00124	2.8e-241	XK27_08635			S	UPF0210 protein
PAKALCKH_00125	8e-39	gcvR			T	UPF0237 protein
PAKALCKH_00126	5.7e-233	capA			M	Bacterial capsule synthesis protein
PAKALCKH_00127	8.6e-148	srtB	3.4.22.70		S	Sortase family
PAKALCKH_00129	1.5e-29				K	Helix-turn-helix domain
PAKALCKH_00130	3.8e-17
PAKALCKH_00131	9.6e-16				S	Protein of unknown function (DUF1211)
PAKALCKH_00133	9.9e-51	frnE			Q	DSBA-like thioredoxin domain
PAKALCKH_00135	7.5e-144	trxB	1.8.1.9		C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PAKALCKH_00137	5.5e-47	trxA			O	Belongs to the thioredoxin family
PAKALCKH_00138	2.2e-98	M1-798			K	Rhodanese Homology Domain
PAKALCKH_00139	4.7e-29	int			L	Belongs to the 'phage' integrase family
PAKALCKH_00140	1.2e-64	rpsI			J	Belongs to the universal ribosomal protein uS9 family
PAKALCKH_00141	2e-79	rplM			J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PAKALCKH_00142	5.1e-22				K	Transcriptional
PAKALCKH_00144	1.3e-151	degV			S	DegV family
PAKALCKH_00145	6e-91	yacP			S	RNA-binding protein containing a PIN domain
PAKALCKH_00146	9.7e-135	trmH	2.1.1.185		J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAKALCKH_00148	2.7e-67	mrnC			J	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PAKALCKH_00149	8.1e-257	cysS	6.1.1.16, 6.3.1.13		J	Belongs to the class-I aminoacyl-tRNA synthetase family
PAKALCKH_00151	3.3e-112	cysE	2.3.1.30		E	serine acetyltransferase
PAKALCKH_00152	5.1e-139				S	SseB protein N-terminal domain
PAKALCKH_00153	0.0	pnp	2.7.7.8		J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
PAKALCKH_00154	1.4e-226	dacA	3.4.16.4		M	Belongs to the peptidase S11 family
PAKALCKH_00155	2.1e-230	dacA	3.4.16.4		M	Belongs to the peptidase S11 family
PAKALCKH_00156	0.0	clpC			O	Belongs to the ClpA ClpB family
PAKALCKH_00157	1.8e-75	ctsR			K	Belongs to the CtsR family
PAKALCKH_00158	1.6e-82				S	Putative small multi-drug export protein
PAKALCKH_00159	1e-182	tsf			J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PAKALCKH_00160	2.2e-137	rpsB			J	Belongs to the universal ribosomal protein uS2 family
PAKALCKH_00161	1.1e-106	ahpC	1.11.1.15		O	alkyl hydroperoxide reductase
PAKALCKH_00162	1.3e-287	ahpF			O	alkyl hydroperoxide reductase
PAKALCKH_00164	3.2e-95				S	reductase
PAKALCKH_00165	3.9e-72	badR			K	Transcriptional regulator, marr family
PAKALCKH_00166	1.2e-35	XK27_02060			S	Transglycosylase associated protein
PAKALCKH_00167	8.6e-237	pepS			E	COG2309 Leucyl aminopeptidase (aminopeptidase T)
PAKALCKH_00168	0.0	polC	2.7.7.7		L	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAKALCKH_00173	1.9e-07
PAKALCKH_00175	1.2e-157	yvgN			C	reductase
PAKALCKH_00176	1.4e-209				S	Tetratricopeptide repeat
PAKALCKH_00177	0.0	lacL	3.2.1.23		G	-beta-galactosidase
PAKALCKH_00178	0.0	lacS			G	transporter
PAKALCKH_00179	3.8e-201	galM	5.1.3.3		G	Catalyzes the interconversion of alpha and beta anomers of maltose
PAKALCKH_00180	1.1e-194	galE	5.1.3.2		M	Belongs to the NAD(P)-dependent epimerase dehydratase family
PAKALCKH_00181	8.6e-284	galT	2.7.7.12		G	UDPglucose--hexose-1-phosphate uridylyltransferase
PAKALCKH_00182	1.3e-221	galK	2.7.1.6		G	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PAKALCKH_00183	1.7e-182	galR			K	Transcriptional regulator
PAKALCKH_00184	3.9e-306	dexB	3.2.1.10, 3.2.1.70	GH13	G	COG0366 Glycosidases
PAKALCKH_00185	3.2e-226	vncS	2.7.13.3		T	Histidine kinase
PAKALCKH_00186	5.2e-116				K	Response regulator receiver domain protein
PAKALCKH_00187	7.8e-239	vex3			V	Efflux ABC transporter, permease protein
PAKALCKH_00188	1.9e-107	vex2			V	abc transporter atp-binding protein
PAKALCKH_00189	2.8e-211	vex1			V	Efflux ABC transporter, permease protein
PAKALCKH_00190	9.5e-283	XK27_07020			S	Belongs to the UPF0371 family
PAKALCKH_00192	6.3e-199	gldA	1.1.1.6		C	glycerol dehydrogenase
PAKALCKH_00193	4.8e-182	XK27_10475			S	oxidoreductase
PAKALCKH_00194	1.4e-57	dhaM	2.7.1.121		S	dihydroxyacetone kinase, phosphotransfer subunit
PAKALCKH_00195	7.6e-95	dhaL	2.7.1.121		S	Dihydroxyacetone kinase
PAKALCKH_00196	2.3e-176	dhaK	2.7.1.121, 2.7.1.28, 2.7.1.29, 4.6.1.15		G	Dihydroxyacetone kinase
PAKALCKH_00197	1.6e-222	thrE			K	Psort location CytoplasmicMembrane, score
PAKALCKH_00198	1.1e-134				T	Ser Thr phosphatase family protein
PAKALCKH_00199	3.2e-34				S	Immunity protein 41
PAKALCKH_00200	0.0	pepO	3.4.24.71		O	Peptidase family M13
PAKALCKH_00201	1.5e-07				S	Enterocin A Immunity
PAKALCKH_00202	4.9e-193	mccF			V	LD-carboxypeptidase
PAKALCKH_00203	3.6e-15				S	integral membrane protein
PAKALCKH_00204	1.1e-43	czrA			K	helix_turn_helix, Arsenical Resistance Operon Repressor
PAKALCKH_00205	2.6e-111	yhfC			S	Putative membrane peptidase family (DUF2324)
PAKALCKH_00207	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_00209	3.6e-245				S	dextransucrase activity
PAKALCKH_00210	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_00211	2.1e-152	endA			F	DNA RNA non-specific endonuclease
PAKALCKH_00212	7.2e-26	epuA			S	DNA-directed RNA polymerase subunit beta
PAKALCKH_00213	7.7e-233	murA	2.5.1.7		M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PAKALCKH_00215	2.1e-193	galE	5.1.3.2		M	Belongs to the NAD(P)-dependent epimerase dehydratase family
PAKALCKH_00216	3.5e-133				G	Domain of unknown function (DUF4832)
PAKALCKH_00217	9.2e-84				S	membrane
PAKALCKH_00218	3e-96				P	VTC domain
PAKALCKH_00219	3.8e-222	cotH			M	CotH kinase protein
PAKALCKH_00220	2.6e-184	pelG			M	Putative exopolysaccharide Exporter (EPS-E)
PAKALCKH_00221	3.2e-272	pelF		GT4	M	Domain of unknown function (DUF3492)
PAKALCKH_00222	0.0				S	Uncharacterised protein conserved in bacteria (DUF2194)
PAKALCKH_00223	3e-146
PAKALCKH_00224	1.3e-275		5.1.3.2		GM	Psort location CytoplasmicMembrane, score
PAKALCKH_00225	1e-210	metK	2.5.1.6		H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PAKALCKH_00226	7.3e-172	birA	6.3.4.15		HK	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
PAKALCKH_00227	1.8e-298	dnaX	2.7.7.7		L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAKALCKH_00228	8.2e-85	ytsP	1.8.4.14		T	GAF domain-containing protein
PAKALCKH_00229	4.2e-164	miaA	2.5.1.75		J	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PAKALCKH_00230	3.2e-20	WQ51_02665			S	Protein of unknown function (DUF3042)
PAKALCKH_00233	1.1e-56	rplS			J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
PAKALCKH_00234	4.3e-212	XK27_05110			P	Chloride transporter ClC family
PAKALCKH_00235	2.4e-38	pheA	1.3.1.12, 2.3.1.79, 4.2.1.51, 5.4.99.5		E	Chorismate mutase
PAKALCKH_00236	7e-281	clcA			P	Chloride transporter, ClC family
PAKALCKH_00237	1e-75	fld			C	Flavodoxin
PAKALCKH_00238	2.8e-18	XK27_08880
PAKALCKH_00239	5.5e-127	XK27_08875			O	Zinc-dependent metalloprotease
PAKALCKH_00240	4.3e-149	estA		CE1	S	Esterase
PAKALCKH_00241	2.1e-310	rnjB			S	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAKALCKH_00242	7.6e-135	XK27_08845			S	abc transporter atp-binding protein
PAKALCKH_00243	2.6e-147	XK27_08840			S	Belongs to the binding-protein-dependent transport system permease family
PAKALCKH_00244	1.1e-176	XK27_08835			S	ABC transporter substrate binding protein
PAKALCKH_00245	1.3e-18				S	Domain of unknown function (DUF4649)
PAKALCKH_00246	0.0	htaA	3.4.21.72		Q	the current gene model (or a revised gene model) may contain a frame shift
PAKALCKH_00247	1.6e-24				Q	the current gene model (or a revised gene model) may contain a frame shift
PAKALCKH_00248	3.9e-66	spxA_2	1.20.4.1		P	Belongs to the ArsC family
PAKALCKH_00249	1e-204	recA			L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PAKALCKH_00250	3.4e-228	cinA	3.5.1.42		S	Belongs to the CinA family
PAKALCKH_00251	2.3e-104	tag	3.2.2.20		L	3-methyladenine DNA glycosylase
PAKALCKH_00252	3e-102	ruvA	3.6.4.12		L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
PAKALCKH_00254	0.0	mutL			L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PAKALCKH_00256	5.4e-69				K	LytTr DNA-binding domain
PAKALCKH_00257	1.3e-78				S	Protein of unknown function (DUF3021)
PAKALCKH_00258	0.0	mutS			L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PAKALCKH_00259	2.5e-56	ymcA	3.6.3.21		S	Belongs to the UPF0342 family
PAKALCKH_00260	3.1e-69	argR			K	Regulates arginine biosynthesis genes
PAKALCKH_00261	0.0	argS	6.1.1.19		J	Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PAKALCKH_00262	2.5e-247	purB	4.3.2.2		F	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PAKALCKH_00263	3.3e-33
PAKALCKH_00264	6.5e-176		1.1.1.169		H	Ketopantoate reductase
PAKALCKH_00265	1.3e-201	purK	6.3.4.18		F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PAKALCKH_00266	5.3e-81	purE	5.4.99.18		F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PAKALCKH_00267	5.1e-237	purD	6.3.4.13		F	Belongs to the GARS family
PAKALCKH_00268	2.3e-156				S	CHAP domain
PAKALCKH_00269	4.7e-293	purH	2.1.2.3, 3.5.4.10		F	Bifunctional purine biosynthesis protein PurH
PAKALCKH_00270	5.8e-100	purN	2.1.2.2		F	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PAKALCKH_00271	2.5e-189	purM	6.3.3.1, 6.3.4.13		F	Phosphoribosylformylglycinamidine cyclo-ligase
PAKALCKH_00272	7.8e-274	purF	2.4.2.14		F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PAKALCKH_00273	0.0	purL	6.3.5.3		F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAKALCKH_00274	3.4e-129	purC	4.1.1.21, 4.3.2.2, 6.3.2.6		F	Belongs to the SAICAR synthetase family
PAKALCKH_00275	4.8e-30	acpP1			IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAKALCKH_00276	1e-182	plsX	2.3.1.15		I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
PAKALCKH_00277	7.5e-138	recO			L	Involved in DNA repair and RecF pathway recombination
PAKALCKH_00278	1.8e-215	araT	2.6.1.1		E	Aminotransferase
PAKALCKH_00279	9.5e-175	prs	2.7.6.1		F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAKALCKH_00280	2.1e-83	usp	3.5.1.28	CBM50	S	CHAP domain
PAKALCKH_00281	1.1e-81	mreD			M	rod shape-determining protein MreD
PAKALCKH_00282	6e-109	mreC			M	Involved in formation and maintenance of cell shape
PAKALCKH_00288	2.6e-10
PAKALCKH_00296	1.1e-175	comGA			NU	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PAKALCKH_00297	9.8e-161	comGA			NU	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PAKALCKH_00298	2.2e-43	comGC			U	Required for transformation and DNA binding
PAKALCKH_00299	1.4e-69	cglD			NU	Competence protein
PAKALCKH_00300	5.3e-15				NU	Type II secretory pathway pseudopilin
PAKALCKH_00301	5.4e-69	comGF			U	Competence protein ComGF
PAKALCKH_00302	2e-12	comGF			U	Putative Competence protein ComGF
PAKALCKH_00303	5e-176	ytxK	2.1.1.72		L	DNA methylase
PAKALCKH_00304	1.1e-220	ackA	2.7.2.1		F	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PAKALCKH_00305	1.3e-25	lanR			K	sequence-specific DNA binding
PAKALCKH_00306	2.1e-104				V	CAAX protease self-immunity
PAKALCKH_00308	9.6e-102				S	CAAX amino terminal protease family protein
PAKALCKH_00309	1.1e-130	proC	1.5.1.2		E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PAKALCKH_00310	7e-203	pepA	3.4.11.7		G	COG1363 Cellulase M and related proteins
PAKALCKH_00311	2.7e-08	XK27_10305			S	Domain of unknown function (DUF4651)
PAKALCKH_00312	4.6e-54	ytpP	2.7.1.180, 5.3.4.1		CO	Thioredoxin
PAKALCKH_00314	5.1e-113	pheT	6.1.1.20		J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAKALCKH_00315	2e-186	yeeE			S	Sulphur transport
PAKALCKH_00316	8.3e-37	yeeD			O	sulfur carrier activity
PAKALCKH_00317	6.6e-66	ssb_2			L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PAKALCKH_00318	1.9e-89	tadA	3.5.4.1, 3.5.4.33		FJ	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
PAKALCKH_00322	9.8e-160	rrmA	2.1.1.187		Q	methyltransferase
PAKALCKH_00323	2.4e-141				S	HAD hydrolase, family IA, variant
PAKALCKH_00324	5.3e-58	dapD	2.3.1.117, 2.3.1.89		E	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
PAKALCKH_00325	1e-220	hipO	3.5.1.47		E	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
PAKALCKH_00326	1.1e-95	ygfA	6.3.3.2		H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PAKALCKH_00327	5.7e-118	gluP	3.4.21.105		O	membrane protein (homolog of Drosophila rhomboid)
PAKALCKH_00328	1e-170	galU	2.7.7.9		M	UTP-glucose-1-phosphate uridylyltransferase
PAKALCKH_00329	5.7e-186	gpsA	1.1.1.94		I	Glycerol-3-phosphate dehydrogenase
PAKALCKH_00330	5.1e-96	XK27_08585			S	Psort location CytoplasmicMembrane, score
PAKALCKH_00331	2.4e-139	fnt			P	Formate nitrite transporter
PAKALCKH_00332	2.1e-230	XK27_09615			C	reductase
PAKALCKH_00333	3.1e-107	XK27_09620			S	FMN reductase (NADPH) activity
PAKALCKH_00334	5e-78	dut	3.6.1.23, 4.1.1.36, 6.3.2.5		F	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
PAKALCKH_00335	9.3e-76		3.5.1.19		Q	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
PAKALCKH_00336	4e-226	radA			O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PAKALCKH_00337	7e-127	WQ51_05710			S	Mitochondrial biogenesis AIM24
PAKALCKH_00338	9.2e-89	cah	4.2.1.1		P	Reversible hydration of carbon dioxide
PAKALCKH_00339	1.2e-50				S	Protein of unknown function (DUF3397)
PAKALCKH_00340	3.7e-70	rplK			J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PAKALCKH_00341	1.4e-119	rplA			J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
PAKALCKH_00342	0.0	amiA			E	ABC transporter, substrate-binding protein, family 5
PAKALCKH_00343	6.7e-273	gltX	6.1.1.17, 6.1.1.24		J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PAKALCKH_00344	1.6e-108	ung2	3.2.2.27		L	Uracil-DNA glycosylase
PAKALCKH_00345	2.9e-273	pepV	3.5.1.18		E	Dipeptidase
PAKALCKH_00346	4.9e-27	dmpI	5.3.2.6		G	Belongs to the 4-oxalocrotonate tautomerase family
PAKALCKH_00347	4.9e-93	yybC
PAKALCKH_00348	2.5e-83	XK27_03610			K	Gnat family
PAKALCKH_00349	1.5e-56	rplT			J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PAKALCKH_00350	8.1e-28	rpmI			J	Belongs to the bacterial ribosomal protein bL35 family
PAKALCKH_00351	1e-85	infC			J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PAKALCKH_00352	1.6e-120	cmk	1.17.7.4, 2.5.1.19, 2.7.1.26, 2.7.4.25, 2.7.7.2, 6.3.2.1		F	Belongs to the cytidylate kinase family. Type 1 subfamily
PAKALCKH_00353	9.3e-17				M	LysM domain
PAKALCKH_00354	1.5e-86	ebsA			S	Family of unknown function (DUF5322)
PAKALCKH_00355	3.3e-233	pepT	3.4.11.4		E	Cleaves the N-terminal amino acid of tripeptides
PAKALCKH_00356	0.0	lytC	3.4.17.14, 3.5.1.28		M	N-acetylmuramoyl-L-alanine amidase
PAKALCKH_00357	3e-96	lepB	3.4.21.89		U	Belongs to the peptidase S26 family
PAKALCKH_00358	1.5e-220				G	COG0457 FOG TPR repeat
PAKALCKH_00359	3.6e-176	yubA			S	permease
PAKALCKH_00360	3.3e-91	mutX	3.6.1.55		F	NTP pyrophosphohydrolases including oxidative damage repair enzymes
PAKALCKH_00361	7.3e-164	ftsX			D	Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation
PAKALCKH_00362	3.2e-124	ftsE			D	cell division ATP-binding protein FtsE
PAKALCKH_00363	1.6e-182	prfB			J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PAKALCKH_00364	3.2e-206	queG	1.17.99.6		C	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PAKALCKH_00365	1.4e-158	yjjH			S	Calcineurin-like phosphoesterase
PAKALCKH_00366	1.5e-130	nfrA	1.5.1.38, 1.5.1.39		C	nitroreductase
PAKALCKH_00367	0.0	pacL	3.6.3.8		P	cation transport ATPase
PAKALCKH_00368	5.3e-68	ywiB			S	Domain of unknown function (DUF1934)
PAKALCKH_00369	1.2e-144	XK27_00115	2.3.1.128		K	Acetyltransferase GNAT family
PAKALCKH_00370	4.6e-146	yidA			S	hydrolases of the HAD superfamily
PAKALCKH_00371	1.3e-226	murM	2.3.2.10, 2.3.2.16		V	protein involved in methicillin resistance
PAKALCKH_00372	1e-57				S	Protein of unknown function (DUF454)
PAKALCKH_00373	2.1e-154	vicX	3.1.26.11		S	Metal-dependent hydrolases of the beta-lactamase superfamily I
PAKALCKH_00374	3.2e-220	vicK	2.7.13.3		T	Histidine kinase
PAKALCKH_00375	3.8e-128				KT	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PAKALCKH_00376	1.6e-140	glnQ	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_00377	1.4e-142	peb1A			ET	ABC-type amino acid transport signal transduction systems, periplasmic component domain
PAKALCKH_00378	2.1e-185	nss			M	transferase activity, transferring glycosyl groups
PAKALCKH_00379	3.6e-16				S	Accessory secretory protein Sec, Asp5
PAKALCKH_00380	2.6e-17				S	Accessory secretory protein Sec Asp4
PAKALCKH_00381	1.8e-243	gtf2			M	A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PAKALCKH_00382	8.5e-279	gtf1	2.4.1.52	GT4	M	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PAKALCKH_00383	0.0	secA2			U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PAKALCKH_00384	1e-78	asp3			S	Accessory Sec system protein Asp3
PAKALCKH_00385	4.9e-290	asp2	3.4.11.5		S	Accessory Sec system protein Asp2
PAKALCKH_00386	1.4e-289	asp1			S	Accessory Sec system protein Asp1
PAKALCKH_00387	9.5e-212	secY2			U	Part of the accessory SecA2 SecY2 system specifically required for export of
PAKALCKH_00388	0.0				M	family 8
PAKALCKH_00389	0.0	sbcC			L	ATPase involved in DNA repair
PAKALCKH_00390	1.1e-217	sbcD			L	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
PAKALCKH_00391	0.0				GM	domain, Protein
PAKALCKH_00392	1.1e-195				L	the current gene model (or a revised gene model) may contain a frame shift
PAKALCKH_00393	2.1e-197	ltrA			S	Low temperature requirement protein
PAKALCKH_00394	1e-20
PAKALCKH_00395	1.8e-78				S	membrane protein of uknown function UCP014873
PAKALCKH_00396	1.5e-81				S	Short repeat of unknown function (DUF308)
PAKALCKH_00397	3.8e-90				K	sequence-specific DNA binding
PAKALCKH_00398	6.9e-157				L	Replication initiation factor
PAKALCKH_00399	1.9e-18				S	Domain of unknown function (DUF3173)
PAKALCKH_00400	2.9e-215	int			L	Belongs to the 'phage' integrase family
PAKALCKH_00402	3.7e-235	rarA			L	ATPase related to the helicase subunit of the Holliday junction resolvase
PAKALCKH_00403	8.4e-27	rpmB			J	Belongs to the bacterial ribosomal protein bL28 family
PAKALCKH_00404	6.3e-44	yrzL			S	Belongs to the UPF0297 family
PAKALCKH_00405	2.3e-69	yqgF			L	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PAKALCKH_00406	3.2e-44	yrzB			S	Belongs to the UPF0473 family
PAKALCKH_00407	2.5e-292	ccs			S	the current gene model (or a revised gene model) may contain a frame shift
PAKALCKH_00408	0.0	nrdD	1.1.98.6		F	Ribonucleoside-triphosphate reductase
PAKALCKH_00409	2.2e-13
PAKALCKH_00410	1.2e-88	XK27_10930			K	acetyltransferase
PAKALCKH_00411	7.7e-114	nrdG	1.97.1.4		O	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PAKALCKH_00412	3.4e-121	yaaA			S	Belongs to the UPF0246 family
PAKALCKH_00413	9.3e-167	XK27_01785			S	cog cog1284
PAKALCKH_00414	0.0	aspS	6.1.1.12		J	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
PAKALCKH_00416	1.9e-239	hisS	6.1.1.21		J	histidyl-tRNA synthetase
PAKALCKH_00417	3.1e-70		2.7.1.201, 2.7.1.208, 2.7.1.211		G	pts system
PAKALCKH_00418	4.4e-130		2.7.1.201, 2.7.1.208, 2.7.1.211		G	pts system
PAKALCKH_00419	5.6e-219	metE	2.1.1.14		E	Methionine synthase
PAKALCKH_00420	1.5e-25	rpmF			J	Belongs to the bacterial ribosomal protein bL32 family
PAKALCKH_00421	6.7e-19	rpmG			J	Belongs to the bacterial ribosomal protein bL33 family
PAKALCKH_00422	4.5e-28
PAKALCKH_00423	2.1e-111	fic			D	Fic/DOC family
PAKALCKH_00424	4e-136				S	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAKALCKH_00425	8.2e-63	rmeD			K	Transcriptional regulator
PAKALCKH_00427	1.4e-40
PAKALCKH_00428	0.0		3.5.1.28		NU	amidase activity
PAKALCKH_00429	0.0		3.5.1.28		M	N-Acetylmuramoyl-L-alanine amidase
PAKALCKH_00430	0.0	pulA	3.2.1.1, 3.2.1.41	CBM48,GH13	G	belongs to the glycosyl hydrolase 13 family
PAKALCKH_00431	1.7e-138	ycdO			P	periplasmic lipoprotein involved in iron transport
PAKALCKH_00432	1.8e-231	ycdB			P	peroxidase
PAKALCKH_00433	1.4e-290	ywbL			P	COG0672 High-affinity Fe2 Pb2 permease
PAKALCKH_00434	2.9e-123	tatC			U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PAKALCKH_00435	1.9e-23	tatA			U	protein secretion
PAKALCKH_00436	2e-211	msmX			P	Belongs to the ABC transporter superfamily
PAKALCKH_00437	3.7e-151	malG			P	ABC transporter (Permease
PAKALCKH_00438	1.1e-248	malF			P	ABC transporter (Permease
PAKALCKH_00439	3.3e-228	malX			G	ABC transporter
PAKALCKH_00440	3.5e-156	malR			K	Transcriptional regulator
PAKALCKH_00441	2.1e-298	malQ	2.4.1.25	GH77	G	4-alpha-glucanotransferase
PAKALCKH_00442	0.0	glgP	2.4.1.1	GT35	G	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PAKALCKH_00443	2e-38
PAKALCKH_00444	2.5e-186	lplA	6.3.1.20		H	Lipoate-protein ligase
PAKALCKH_00445	3.5e-194	xerS			D	Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division
PAKALCKH_00446	0.0	pepN	3.4.11.2		E	aminopeptidase
PAKALCKH_00447	7.1e-113	phoU			P	Plays a role in the regulation of phosphate uptake
PAKALCKH_00448	3.9e-139	pstB	3.6.3.27		P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PAKALCKH_00449	1.5e-149	pstB	3.6.3.27		P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PAKALCKH_00450	1.3e-154	pstA			P	phosphate transport system permease
PAKALCKH_00451	1.9e-156	pstC			P	probably responsible for the translocation of the substrate across the membrane
PAKALCKH_00452	9e-156	pstS			P	phosphate
PAKALCKH_00453	8.5e-251	rsmF	2.1.1.176, 2.1.1.178		J	NOL1 NOP2 sun family protein
PAKALCKH_00454	1.3e-142	suhB	3.1.3.25		G	Belongs to the inositol monophosphatase superfamily
PAKALCKH_00455	1.5e-43	yktA			S	Belongs to the UPF0223 family
PAKALCKH_00456	7.2e-71	spxA	1.20.4.1		K	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
PAKALCKH_00457	4e-167	ribF	2.7.1.26, 2.7.7.2		H	Belongs to the ribF family
PAKALCKH_00458	1.5e-147	truB	5.4.99.25		J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PAKALCKH_00459	1.8e-243	XK27_04775			S	hemerythrin HHE cation binding domain
PAKALCKH_00460	6.1e-35	M1-755			P	Hemerythrin HHE cation binding domain protein
PAKALCKH_00461	2.8e-111	hsdS2	2.1.1.72		V	Type I restriction modification DNA specificity domain
PAKALCKH_00462	3.6e-85	tpx	1.11.1.15		O	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PAKALCKH_00463	6.9e-30				S	haloacid dehalogenase-like hydrolase
PAKALCKH_00464	2.3e-99				S	haloacid dehalogenase-like hydrolase
PAKALCKH_00465	1.9e-239	metY	2.5.1.49		E	o-acetylhomoserine
PAKALCKH_00466	0.0	pcrA	3.6.4.12		L	ATP-dependent DNA helicase
PAKALCKH_00467	3.1e-240	agcS			E	(Alanine) symporter
PAKALCKH_00468	5.2e-243	mnmE			S	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PAKALCKH_00469	4.6e-171	bglC			K	Transcriptional regulator
PAKALCKH_00470	0.0	sasH	3.1.3.5, 3.6.1.45		F	Belongs to the 5'-nucleotidase family
PAKALCKH_00471	1.1e-81	yecS			P	ABC transporter (Permease
PAKALCKH_00472	5.7e-147	yckB			ET	Belongs to the bacterial solute-binding protein 3 family
PAKALCKH_00473	1.8e-241	nylA	3.5.1.4		J	Belongs to the amidase family
PAKALCKH_00474	4.4e-112	pyrE	2.4.2.10, 4.1.1.23		F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PAKALCKH_00475	2e-126	pyrF	4.1.1.23		F	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
PAKALCKH_00476	1e-147	csm6			S	Psort location Cytoplasmic, score
PAKALCKH_00477	6.6e-114	csm6			S	Psort location Cytoplasmic, score
PAKALCKH_00478	6.4e-204	csm5			L	CRISPR-associated RAMP protein, Csm5 family
PAKALCKH_00479	3.7e-165	csm4			L	CRISPR-associated RAMP protein, Csm4 family
PAKALCKH_00480	2.4e-116	csm3			L	RAMP superfamily
PAKALCKH_00481	7.3e-62	csm2			L	Pfam:DUF310
PAKALCKH_00482	0.0	csm1			S	CRISPR-associated protein Csm1 family
PAKALCKH_00483	1.6e-129	cas6			S	Pfam:DUF2276
PAKALCKH_00484	1.6e-52	cas2			L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAKALCKH_00485	1.3e-179	cas1			L	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAKALCKH_00486	3.2e-175	pyrD	1.3.1.14, 1.3.98.1		F	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
PAKALCKH_00487	1.3e-145	pyrK			C	Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( )
PAKALCKH_00488	6.1e-94	thiJ	2.7.11.1, 3.5.1.124		S	DJ-1 family
PAKALCKH_00489	1.2e-133				S	TraX protein
PAKALCKH_00490	2.8e-307	FbpA			K	RNA-binding protein homologous to eukaryotic snRNP
PAKALCKH_00491	2.7e-272				S	Psort location CytoplasmicMembrane, score
PAKALCKH_00492	3.8e-230	dinF			V	Mate efflux family protein
PAKALCKH_00493	1.3e-179	yclQ			P	ABC-type enterochelin transport system, periplasmic component
PAKALCKH_00494	0.0				V	Type III restriction enzyme, res subunit
PAKALCKH_00495	3.7e-111	gph	3.1.3.18		S	HAD hydrolase, family IA, variant 1
PAKALCKH_00496	2.5e-138		2.4.2.3		F	Phosphorylase superfamily
PAKALCKH_00498	0.0	spxB	1.2.3.3, 1.2.5.1		C	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
PAKALCKH_00499	1.1e-135	copA	3.6.3.54		P	P-type ATPase
PAKALCKH_00500	3e-193	hemH	4.99.1.1, 4.99.1.9		H	Catalyzes the ferrous insertion into protoporphyrin IX
PAKALCKH_00501	8.9e-159	czcD			P	cation diffusion facilitator family transporter
PAKALCKH_00502	6e-100				K	Transcriptional regulator, TetR family
PAKALCKH_00503	2.1e-71				S	Protein of unknown function with HXXEE motif
PAKALCKH_00504	2.6e-39
PAKALCKH_00505	2.5e-150				IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAKALCKH_00506	1e-153				I	Alpha/beta hydrolase family
PAKALCKH_00507	1.5e-178		1.1.1.1		C	nadph quinone reductase
PAKALCKH_00508	1e-67				K	Transcriptional regulator
PAKALCKH_00509	1.2e-161	mleP2			S	Transporter, auxin efflux carrier (AEC) family protein
PAKALCKH_00510	2.2e-148	cbiO2			P	ABC transporter, ATP-binding protein
PAKALCKH_00511	6.6e-156				P	abc transporter atp-binding protein
PAKALCKH_00512	2.8e-132	cbiQ			P	cobalt transport
PAKALCKH_00513	6.3e-92		2.7.7.65		T	Psort location CytoplasmicMembrane, score
PAKALCKH_00514	7.1e-69				S	Phenazine biosynthesis protein
PAKALCKH_00515	1.7e-91	tetR			K	transcriptional regulator
PAKALCKH_00516	8.6e-125				V	abc transporter atp-binding protein
PAKALCKH_00517	0.0				V	ABC transporter (Permease
PAKALCKH_00518	1.1e-110	magIII			L	Base excision DNA repair protein, HhH-GPD family
PAKALCKH_00519	4.4e-275	proWX			P	ABC transporter
PAKALCKH_00520	3.9e-128	proV			E	abc transporter atp-binding protein
PAKALCKH_00521	1.4e-137		1.6.5.2		GM	epimerase
PAKALCKH_00522	4.1e-72	mgrA			K	Transcriptional regulator, MarR family
PAKALCKH_00523	9.2e-80				S	Macro domain
PAKALCKH_00524	2.4e-94				K	COG COG0846 NAD-dependent protein deacetylases, SIR2 family
PAKALCKH_00525	3.1e-40				C	Pyridoxamine 5'-phosphate oxidase
PAKALCKH_00526	3e-133	budA	4.1.1.5		H	Belongs to the alpha-acetolactate decarboxylase family
PAKALCKH_00527	0.0	alsS	2.2.1.6		EH	Belongs to the TPP enzyme family
PAKALCKH_00530	0.0	lepA			M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
PAKALCKH_00532	1.1e-136				IQ	Acetoin reductase
PAKALCKH_00533	3.2e-43	pspE			P	Rhodanese-like protein
PAKALCKH_00534	1.4e-71	ndk	2.7.4.6		F	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
PAKALCKH_00535	1.5e-222	XK27_05470			E	Methionine synthase
PAKALCKH_00536	2.1e-257	trmFO	2.1.1.74		J	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PAKALCKH_00537	8.3e-225				T	PhoQ Sensor
PAKALCKH_00538	2.4e-121				KT	Transcriptional regulatory protein, C terminal
PAKALCKH_00539	4.8e-143				S	TraX protein
PAKALCKH_00541	4.1e-53				V	ABC-2 family transporter protein
PAKALCKH_00542	5.1e-82	mutF			V	AAA domain, putative AbiEii toxin, Type IV TA system
PAKALCKH_00543	0.0	topA	5.99.1.2		L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PAKALCKH_00544	2.3e-156	dprA			LU	DNA protecting protein DprA
PAKALCKH_00545	1e-165				GK	ROK family
PAKALCKH_00546	1.3e-134	rnhB	3.1.26.4		L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAKALCKH_00547	3e-156	ylqF			S	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PAKALCKH_00548	5.3e-127				K	DNA-binding helix-turn-helix protein
PAKALCKH_00549	6e-91	niaR			S	small molecule binding protein (contains 3H domain)
PAKALCKH_00550	2.7e-86
PAKALCKH_00551	3.8e-274	ffh	3.6.5.4		U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PAKALCKH_00552	2e-55	ylxM			S	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PAKALCKH_00553	2.7e-126	gntR1			K	transcriptional
PAKALCKH_00554	8.7e-303	guaA	2.3.1.128, 6.3.5.2		F	Catalyzes the synthesis of GMP from XMP
PAKALCKH_00555	8.8e-99	rimL			J	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
PAKALCKH_00556	2e-80	adhP	1.1.1.1		C	alcohol dehydrogenase
PAKALCKH_00557	2.2e-96	adhP	1.1.1.1		C	alcohol dehydrogenase
PAKALCKH_00558	2.1e-45
PAKALCKH_00559	6.4e-50
PAKALCKH_00560	2.3e-270	uvrX	2.7.7.7		L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PAKALCKH_00561	4.6e-157	aatB			ET	ABC transporter substrate-binding protein
PAKALCKH_00562	1.7e-111	glnQ	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_00563	3.1e-105	artQ			P	ABC transporter (Permease
PAKALCKH_00564	6.6e-59	phnA			P	Alkylphosphonate utilization operon protein PhnA
PAKALCKH_00565	0.0	glmS	2.6.1.16		M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PAKALCKH_00566	8.4e-165	cpsY			K	Transcriptional regulator
PAKALCKH_00567	8.7e-125	mur1	3.4.17.14, 3.5.1.28		NU	muramidase
PAKALCKH_00568	3.9e-163	yeiH			S	Membrane
PAKALCKH_00570	2.6e-09
PAKALCKH_00571	1.5e-291	adcA			P	Belongs to the bacterial solute-binding protein 9 family
PAKALCKH_00572	1.5e-144	XK27_10720			D	peptidase activity
PAKALCKH_00573	1.3e-273	pepD			E	Dipeptidase
PAKALCKH_00574	1.3e-160	whiA			K	May be required for sporulation
PAKALCKH_00575	5.3e-181	ybhK			S	Required for morphogenesis under gluconeogenic growth conditions
PAKALCKH_00576	1.6e-160	rapZ			S	Displays ATPase and GTPase activities
PAKALCKH_00577	4.2e-133	yejC			S	cyclic nucleotide-binding protein
PAKALCKH_00578	1.7e-202				D	nuclear chromosome segregation
PAKALCKH_00579	1.4e-94	queF	1.7.1.13		S	Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily
PAKALCKH_00580	1.9e-135	queE	1.97.1.4, 4.3.99.3		H	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds
PAKALCKH_00581	1.4e-80	queD	4.1.2.50, 4.2.3.12		H	synthase
PAKALCKH_00582	4.4e-123	queC	6.3.4.20		F	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PAKALCKH_00583	2.3e-63	tdcF	3.5.99.10		J	endoribonuclease L-PSP
PAKALCKH_00584	3.3e-201	pmrB			EGP	Major facilitator Superfamily
PAKALCKH_00585	5.3e-18
PAKALCKH_00586	8.4e-262	asnS	6.1.1.22		J	Catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PAKALCKH_00587	2e-211	aspB	2.6.1.1, 2.6.1.14		E	Aminotransferase
PAKALCKH_00588	2.3e-81	ypmB			S	Protein conserved in bacteria
PAKALCKH_00589	0.0	dinG	2.7.7.7, 3.6.4.12		L	helicase involved in DNA repair and perhaps also replication
PAKALCKH_00590	2.5e-115	ycbL	3.1.2.6		S	COG0491 Zn-dependent hydrolases, including glyoxylases
PAKALCKH_00591	5e-168	yufQ			S	Belongs to the binding-protein-dependent transport system permease family
PAKALCKH_00592	2.3e-177	yufP			S	Belongs to the binding-protein-dependent transport system permease family
PAKALCKH_00593	4.1e-281	xylG	3.6.3.17		S	ABC transporter, ATP-binding protein
PAKALCKH_00594	1.8e-190	tcsA			S	membrane
PAKALCKH_00595	2.2e-64	cdd	2.4.2.2, 3.5.4.5		F	This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis
PAKALCKH_00596	1.8e-111	deoC	4.1.2.4, 5.4.2.8		F	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PAKALCKH_00597	5e-232	pdp	2.4.2.2, 2.4.2.4		F	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
PAKALCKH_00598	5.4e-104	rsmC	2.1.1.172		J	Methyltransferase small domain protein
PAKALCKH_00599	5.6e-172	coaA	2.7.1.33		F	Pantothenic acid kinase
PAKALCKH_00600	1e-29	rpsT			J	Binds directly to 16S ribosomal RNA
PAKALCKH_00601	9.8e-237				T	PhoQ Sensor
PAKALCKH_00602	1e-119				T	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PAKALCKH_00603	0.0	fhs	6.3.4.3		F	Belongs to the formate--tetrahydrofolate ligase family
PAKALCKH_00604	1.6e-115	coaB	4.1.1.36, 6.3.2.5		H	Phosphopantothenate-cysteine ligase
PAKALCKH_00605	3.1e-90	coaBC	4.1.1.36, 6.3.2.5		H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PAKALCKH_00606	2.7e-92	panT			S	ECF transporter, substrate-specific component
PAKALCKH_00607	0.0	pgm	5.4.2.2, 5.4.2.8		G	Phosphoglucomutase
PAKALCKH_00608	1.6e-165	metF	1.5.1.20		E	reductase
PAKALCKH_00609	0.0	metE	2.1.1.14		E	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PAKALCKH_00611	0.0	pabB	2.6.1.85, 4.1.3.27, 4.1.3.38		EH	component I
PAKALCKH_00612	0.0		3.6.3.8		P	cation transport ATPase
PAKALCKH_00613	1.5e-239	dltD			M	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
PAKALCKH_00614	2.2e-35	dltC	6.1.1.13		IQ	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAKALCKH_00615	1.2e-235	dltB			M	Membrane protein involved in D-alanine export
PAKALCKH_00616	4.2e-297	dltA	6.1.1.13		Q	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAKALCKH_00617	0.0	XK27_10035			V	abc transporter atp-binding protein
PAKALCKH_00618	8e-289	yfiB1			V	abc transporter atp-binding protein
PAKALCKH_00619	1.4e-99	pvaA			M	lytic transglycosylase activity
PAKALCKH_00620	5.5e-178	ndpA			S	37-kD nucleoid-associated bacterial protein
PAKALCKH_00621	1.8e-229	glyA	2.1.2.1		E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PAKALCKH_00622	1.1e-61	XK27_05710			K	Acetyltransferase (GNAT) domain
PAKALCKH_00623	8.3e-100	ywlC	2.7.7.87, 3.1.3.48		J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
PAKALCKH_00624	7.5e-144	prmB	2.1.1.297, 2.1.1.298		J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
PAKALCKH_00625	3.6e-191	prfA			J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PAKALCKH_00626	5.1e-110	tdk	2.7.1.21		F	thymidine kinase
PAKALCKH_00627	5.8e-183	add	3.5.4.4		F	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PAKALCKH_00628	4.9e-153	gst			O	Glutathione S-transferase
PAKALCKH_00629	1.7e-176	nrnA	3.1.13.3, 3.1.3.7		S	domain protein
PAKALCKH_00630	1.7e-168	apbE	2.7.1.180		H	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
PAKALCKH_00631	4.4e-45	rpmE2			J	50S ribosomal protein L31
PAKALCKH_00632	1.1e-34	mntH			P	Mn2 and Fe2 transporters of the NRAMP family
PAKALCKH_00633	2e-152	mntH			P	Mn2 and Fe2 transporters of the NRAMP family
PAKALCKH_00634	2.7e-16	mntH			P	Mn2 and Fe2 transporters of the NRAMP family
PAKALCKH_00635	1.1e-162	ypuA			S	secreted protein
PAKALCKH_00636	2e-70	yaeR			E	COG0346 Lactoylglutathione lyase and related lyases
PAKALCKH_00637	9.3e-133	srtA	3.4.22.70		M	Sortase (surface protein transpeptidase)
PAKALCKH_00638	0.0	gyrA	5.99.1.3		L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAKALCKH_00639	4.1e-181	ldh	1.1.1.27		C	Belongs to the LDH MDH superfamily. LDH family
PAKALCKH_00640	1.4e-256	noxE			P	NADH oxidase
PAKALCKH_00641	2.5e-294	yfmM			S	abc transporter atp-binding protein
PAKALCKH_00642	3.9e-77	XK27_01265			S	ECF-type riboflavin transporter, S component
PAKALCKH_00643	7e-145	pdxK	2.7.1.35		H	Belongs to the pyridoxine kinase family
PAKALCKH_00644	2.2e-85				S	ECF-type riboflavin transporter, S component
PAKALCKH_00646	5.7e-236	XK27_08130			K	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
PAKALCKH_00647	7e-56	nrdD_1	1.1.98.6, 1.17.4.1		F	Ribonucleoside-triphosphate reductase
PAKALCKH_00649	0.0	pheT	6.1.1.20		J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAKALCKH_00650	3.2e-92	paiA	2.3.1.57		K	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PAKALCKH_00651	1.2e-196	pheS	6.1.1.20		J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PAKALCKH_00652	3.8e-22	WQ51_00220			K	Helix-turn-helix domain
PAKALCKH_00653	9.1e-90				S	Protein of unknown function (DUF3278)
PAKALCKH_00654	0.0	smc			D	Required for chromosome condensation and partitioning
PAKALCKH_00655	2.5e-124	rnc	3.1.26.3		J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
PAKALCKH_00656	6.6e-173	dapA	4.3.3.7		E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAKALCKH_00657	3.6e-199	asd	1.2.1.11		E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PAKALCKH_00658	2e-120	alkD			L	DNA alkylation repair enzyme
PAKALCKH_00659	2.6e-291	cls			I	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAKALCKH_00660	6.3e-93	pat	2.3.1.183		M	acetyltransferase
PAKALCKH_00661	2.4e-270	cls			I	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAKALCKH_00662	2.6e-36				P	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PAKALCKH_00663	1.5e-36				L	RePlication protein
PAKALCKH_00664	0.0	uvrC			L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
PAKALCKH_00665	1.3e-128	yjjG	3.1.3.102, 3.1.3.104, 3.1.3.5, 3.8.1.2		E	hydrolase
PAKALCKH_00666	1.2e-120	sdaAB	4.3.1.17		E	L-serine dehydratase
PAKALCKH_00667	3.4e-147	sdaAA	4.3.1.17		E	L-serine dehydratase
PAKALCKH_00668	5.6e-124	tktC	2.2.1.1		G	Transketolase, pyrimidine binding domain
PAKALCKH_00669	4e-124	tktN	2.2.1.1		G	Transketolase
PAKALCKH_00670	1.4e-219	ulaA	2.7.1.194		S	PTS system sugar-specific permease component
PAKALCKH_00671	3.7e-42	ulaB	2.7.1.194		G	COG3414 Phosphotransferase system galactitol-specific IIB component
PAKALCKH_00672	8e-224		2.7.1.194, 2.7.1.202, 2.7.1.204		H	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
PAKALCKH_00673	0.0	fruA	3.2.1.1, 3.2.1.26, 3.2.1.65, 3.2.1.80	GH13,GH32	G	Belongs to the glycosyl hydrolase 32 family
PAKALCKH_00674	2e-161	yjlA			EG	membrane
PAKALCKH_00675	8.1e-80		3.4.21.89		S	RDD family
PAKALCKH_00676	1.9e-153				K	sequence-specific DNA binding
PAKALCKH_00677	1.1e-84
PAKALCKH_00678	3.4e-77	yfiQ			K	Acetyltransferase (GNAT) domain
PAKALCKH_00679	1.9e-141				S	ABC-2 family transporter protein
PAKALCKH_00680	5.3e-142				S	ABC-2 family transporter protein
PAKALCKH_00681	3.6e-185				S	abc transporter atp-binding protein
PAKALCKH_00682	5.7e-101	desR			K	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PAKALCKH_00683	8.2e-191	desK	2.7.13.3		T	Histidine kinase
PAKALCKH_00684	6.9e-133	yvfS			V	ABC-2 type transporter
PAKALCKH_00685	1.3e-159	XK27_09825			V	'abc transporter, ATP-binding protein
PAKALCKH_00688	1.5e-164	yocS			S	Transporter
PAKALCKH_00689	1.2e-82	cdd	2.4.2.4, 3.5.4.5		F	cytidine deaminase activity
PAKALCKH_00690	2.2e-115	yvfS			V	Transporter
PAKALCKH_00691	5e-154	XK27_09825			V	abc transporter atp-binding protein
PAKALCKH_00692	3.7e-16	liaI			KT	membrane
PAKALCKH_00693	5.8e-30	liaI			KT	membrane
PAKALCKH_00694	6.1e-93	XK27_05000			S	metal cluster binding
PAKALCKH_00695	0.0				V	ABC transporter (permease)
PAKALCKH_00696	1.1e-133	macB2			V	ABC transporter, ATP-binding protein
PAKALCKH_00697	1.3e-150				T	Histidine kinase
PAKALCKH_00698	1.2e-123				KT	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PAKALCKH_00699	8.8e-99	xpt	2.4.2.22, 2.4.2.7		F	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
PAKALCKH_00700	1.9e-223	pbuX			F	xanthine permease
PAKALCKH_00701	2.1e-280				V	(ABC) transporter
PAKALCKH_00702	5.4e-142				K	sequence-specific DNA binding
PAKALCKH_00703	1.8e-243	norM			V	Multidrug efflux pump
PAKALCKH_00704	1.7e-176	msrA	1.8.4.11, 1.8.4.12		O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PAKALCKH_00705	2.8e-233	brnQ			E	Component of the transport system for branched-chain amino acids
PAKALCKH_00706	2.1e-179	manA	5.3.1.8		G	mannose-6-phosphate isomerase
PAKALCKH_00707	2e-58				S	Protein of unknown function (DUF3290)
PAKALCKH_00708	6e-101				S	Protein of unknown function (DUF421)
PAKALCKH_00709	5.9e-15	csbD			K	CsbD-like
PAKALCKH_00710	3.6e-107				S	Carbohydrate-binding domain-containing protein Cthe_2159
PAKALCKH_00711	2.6e-50	XK27_01300			P	Protein conserved in bacteria
PAKALCKH_00712	2.1e-215	yfnA			E	amino acid
PAKALCKH_00713	0.0				S	dextransucrase activity
PAKALCKH_00714	2.8e-82	btuE	1.11.1.9		O	Belongs to the glutathione peroxidase family
PAKALCKH_00715	1.5e-42				S	Sugar efflux transporter for intercellular exchange
PAKALCKH_00716	2.2e-202				P	FtsX-like permease family
PAKALCKH_00717	3.9e-122				V	abc transporter atp-binding protein
PAKALCKH_00718	5.8e-95				K	WHG domain
PAKALCKH_00719	8.8e-170	ydhF			S	Aldo keto reductase
PAKALCKH_00720	1.1e-06				S	Protein of unknown function (DUF3169)
PAKALCKH_00721	2.5e-27	XK27_07105			K	transcriptional
PAKALCKH_00722	1.5e-28
PAKALCKH_00723	2.8e-108	XK27_02070			S	nitroreductase
PAKALCKH_00724	4.8e-154		1.13.11.2		S	glyoxalase
PAKALCKH_00725	1.1e-77	ywnA			K	Transcriptional regulator
PAKALCKH_00726	2.2e-154				E	Alpha/beta hydrolase of unknown function (DUF915)
PAKALCKH_00727	1.1e-229	pts13C			G	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PAKALCKH_00728	2.4e-167	bcrA			V	abc transporter atp-binding protein
PAKALCKH_00729	8.9e-128				S	ABC-2 family transporter protein
PAKALCKH_00730	9.4e-45				S	Domain of unknown function (DUF4352)
PAKALCKH_00732	0.0	mprF	2.3.2.3		S	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PAKALCKH_00733	2.8e-163	mleP			S	auxin efflux carrier
PAKALCKH_00734	2.2e-309	sfcA	1.1.1.38, 4.1.1.101		C	malic enzyme
PAKALCKH_00735	1.2e-47				K	Helix-turn-helix
PAKALCKH_00736	1.4e-119	mleR			K	malolactic fermentation system
PAKALCKH_00737	7.3e-130	XK27_00785			S	CAAX protease self-immunity
PAKALCKH_00738	8.1e-236				EGP	Major facilitator Superfamily
PAKALCKH_00739	1.8e-66	rmaI			K	Transcriptional regulator, MarR family
PAKALCKH_00740	3.6e-89	maa	2.3.1.79		GK	Maltose O-acetyltransferase
PAKALCKH_00741	8.9e-65		2.7.13.3		T	Histidine kinase
PAKALCKH_00742	2.5e-73				K	Transcriptional regulatory protein, C terminal
PAKALCKH_00744	1.9e-14
PAKALCKH_00745	6.6e-88				V	abc transporter atp-binding protein
PAKALCKH_00746	0.0		3.5.1.28		M	domain protein
PAKALCKH_00747	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_00748	1.5e-12
PAKALCKH_00749	2.5e-189	trpS	6.1.1.2		J	Tryptophanyl-tRNA synthetase
PAKALCKH_00750	1.6e-152	yvjA			S	membrane
PAKALCKH_00751	1.1e-305	ybiT			S	abc transporter atp-binding protein
PAKALCKH_00752	0.0	XK27_10405			S	Bacterial membrane protein YfhO
PAKALCKH_00756	4e-119	yoaK			S	Protein of unknown function (DUF1275)
PAKALCKH_00757	3e-81	rlmH	2.1.1.177		J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PAKALCKH_00758	9.2e-207	htrA	3.4.21.107		O	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain'
PAKALCKH_00759	1e-134	parB			K	Belongs to the ParB family
PAKALCKH_00760	1.2e-255	dnaA			L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PAKALCKH_00761	7.2e-198	dnaN	2.7.7.7		L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PAKALCKH_00762	1.1e-29	yyzM			S	Protein conserved in bacteria
PAKALCKH_00763	1.1e-203	ychF			J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
PAKALCKH_00764	3e-104	pth	3.1.1.29		J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
PAKALCKH_00765	0.0	mfd			L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PAKALCKH_00766	2.2e-39	yabO			J	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
PAKALCKH_00767	3e-60	divIC			D	Septum formation initiator
PAKALCKH_00769	4.6e-233	XK27_09285	3.5.2.6		V	Beta-lactamase enzyme family
PAKALCKH_00770	9.7e-236	tilS	2.4.2.8, 6.3.4.19		D	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
PAKALCKH_00771	2e-97	hpt	2.4.2.8, 6.3.4.19		F	Belongs to the purine pyrimidine phosphoribosyltransferase family
PAKALCKH_00772	0.0	ftsH			O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PAKALCKH_00773	3.2e-171				S	dextransucrase activity
PAKALCKH_00774	9.6e-291				S	dextransucrase activity
PAKALCKH_00775	1.8e-156	pdxS	4.3.3.6		H	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
PAKALCKH_00776	6.8e-99	pdxT	4.3.3.6		H	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
PAKALCKH_00777	0.0				S	dextransucrase activity
PAKALCKH_00778	2.3e-87				S	dextransucrase activity
PAKALCKH_00779	0.0				S	dextransucrase activity
PAKALCKH_00780	0.0				S	dextransucrase activity
PAKALCKH_00781	3.2e-235				S	dextransucrase activity
PAKALCKH_00782	1.9e-85				S	dextransucrase activity
PAKALCKH_00783	3.6e-114	pscB			M	CHAP domain protein
PAKALCKH_00784	1.2e-263	glnA	6.3.1.2		E	glutamine synthetase
PAKALCKH_00785	2.5e-62	glnR			K	Transcriptional regulator
PAKALCKH_00786	3e-87				S	Fusaric acid resistance protein-like
PAKALCKH_00787	5.8e-222	pgk	2.7.2.3, 5.3.1.1		F	Belongs to the phosphoglycerate kinase family
PAKALCKH_00788	1.9e-186	gap	1.2.1.12		C	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
PAKALCKH_00789	0.0	fusA			J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PAKALCKH_00790	3.9e-81	rpsG			J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
PAKALCKH_00791	2.3e-69	rpsL			J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PAKALCKH_00792	4e-142	purR	2.4.2.7		F	operon repressor
PAKALCKH_00793	3.1e-178	cbf			S	3'-5' exoribonuclease yhaM
PAKALCKH_00794	3.2e-170	rmuC			S	RmuC domain protein
PAKALCKH_00795	3.8e-116	thiN	2.7.6.2		H	thiamine pyrophosphokinase
PAKALCKH_00796	3.9e-119	rpe	5.1.3.1		G	Belongs to the ribulose-phosphate 3-epimerase family
PAKALCKH_00797	3.2e-161	rsgA	3.1.3.100		G	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
PAKALCKH_00799	1.2e-155	ksgA	2.1.1.182		J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
PAKALCKH_00800	1.1e-98	rnmV	3.1.26.8		J	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PAKALCKH_00801	1.6e-143	tatD			L	Hydrolase, tatd
PAKALCKH_00802	1.2e-73	yccU			S	CoA-binding protein
PAKALCKH_00803	2.4e-50	trxA			O	Belongs to the thioredoxin family
PAKALCKH_00804	1.7e-142				S	Macro domain protein
PAKALCKH_00805	1.8e-61				L	thioesterase
PAKALCKH_00806	2.1e-52	bta	1.8.1.8		CO	cell redox homeostasis
PAKALCKH_00811	4.8e-237	fliF	2.1.1.72		N	bacterial-type flagellum-dependent cell motility
PAKALCKH_00812	1.6e-94	hpf			J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PAKALCKH_00813	1.3e-98	comFC			K	competence protein
PAKALCKH_00814	2.4e-237	comFA			L	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
PAKALCKH_00815	2.2e-108	yvyE	3.4.13.9		S	YigZ family
PAKALCKH_00816	6.3e-168	cysK	2.5.1.47		E	Belongs to the cysteine synthase cystathionine beta- synthase family
PAKALCKH_00817	6.6e-111	acuB			S	CBS domain
PAKALCKH_00818	5.6e-124	livF			E	COG0410 ABC-type branched-chain amino acid transport systems, ATPase component
PAKALCKH_00819	4e-136	livG			E	COG0411 ABC-type branched-chain amino acid transport systems, ATPase component
PAKALCKH_00820	4.9e-139	livM			E	Belongs to the binding-protein-dependent transport system permease family
PAKALCKH_00821	1.6e-144	livH			E	Belongs to the binding-protein-dependent transport system permease family
PAKALCKH_00822	2.6e-211	livJ			E	COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component
PAKALCKH_00823	1.9e-46	ylbG			S	UPF0298 protein
PAKALCKH_00824	6.4e-73	ylbF			S	Belongs to the UPF0342 family
PAKALCKH_00825	3.7e-105	clpP	3.4.21.92		OU	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
PAKALCKH_00826	5.7e-112	upp	2.4.2.9		F	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PAKALCKH_00827	0.0	sacB	2.4.1.10, 2.4.1.9, 3.2.1.26	GH32,GH68	G	Belongs to the glycosyl hydrolase 68 family
PAKALCKH_00828	1.4e-225	tgt	2.4.2.29		F	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
PAKALCKH_00829	3.4e-14	rpmH			J	Ribosomal protein L34
PAKALCKH_00830	2.8e-102		1.6.5.2		S	NADPH-quinone reductase (modulator of drug activity B)
PAKALCKH_00831	1.1e-104				K	Transcriptional regulator
PAKALCKH_00832	1.2e-151	jag			S	RNA-binding protein
PAKALCKH_00833	9.7e-147	yidC			U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAKALCKH_00834	3.8e-54	rnpA	3.1.26.5		J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
PAKALCKH_00835	1.7e-262	argH	4.3.2.1		E	Argininosuccinate lyase
PAKALCKH_00836	5.8e-230	argG	6.3.4.5		E	Belongs to the argininosuccinate synthase family. Type 1 subfamily
PAKALCKH_00837	7.2e-130	fasA			KT	Response regulator of the LytR AlgR family
PAKALCKH_00838	2.3e-224	fasC	2.7.13.3		T	protein histidine kinase activity
PAKALCKH_00839	6e-209	hpk9	2.7.13.3		T	protein histidine kinase activity
PAKALCKH_00840	1.5e-150	hpk9	2.7.13.3		T	protein histidine kinase activity
PAKALCKH_00841	3.5e-220		2.7.13.3		T	signal transduction protein with a C-terminal ATPase domain
PAKALCKH_00842	1.2e-77	greA			K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PAKALCKH_00843	7.1e-302	mltG			ADL	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PAKALCKH_00844	1.5e-86	XK27_09675			K	histone acetyltransferase HPA2 and related acetyltransferases
PAKALCKH_00845	5.2e-256	mpl	6.3.2.4, 6.3.2.45, 6.3.2.8		M	Belongs to the MurCDEF family
PAKALCKH_00846	9.6e-23
PAKALCKH_00847	0.0	snf	2.7.11.1		L	Superfamily II DNA RNA helicases, SNF2 family'
PAKALCKH_00848	4.8e-27	lapA			Q	Transposase
PAKALCKH_00849	3.8e-38				S	Domain of unknown function
PAKALCKH_00850	7.9e-43				M	domain, Protein
PAKALCKH_00851	7.4e-164				L	Transposase
PAKALCKH_00852	1.2e-22				L	Transposase (IS116 IS110 IS902 family)
PAKALCKH_00854	2.1e-149				V	ABC transporter, ATP-binding protein
PAKALCKH_00855	4.8e-54				S	ABC-2 family transporter protein
PAKALCKH_00856	0.0	mgtA	3.6.3.2		P	COG0474 Cation transport ATPase
PAKALCKH_00857	1.1e-256	glmU	2.3.1.157, 2.7.7.23		M	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PAKALCKH_00858	7.7e-97	nudF	3.6.1.13		L	AdP-ribose pyrophosphatase
PAKALCKH_00859	4.6e-23
PAKALCKH_00860	7.7e-118	mtnN	3.2.2.9		E	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PAKALCKH_00861	0.0				U	protein secretion
PAKALCKH_00862	5.2e-192	dgs	2.4.1.208	GT4	M	Glycosyltransferase, group 1 family protein
PAKALCKH_00863	1.3e-246	mgs	2.4.1.337	GT4	M	Glycosyltransferase, group 1 family protein
PAKALCKH_00864	1.1e-12
PAKALCKH_00865	0.0	thrS	6.1.1.3		J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PAKALCKH_00866	7.1e-159				S	hydrolases or acyltransferases (alpha beta hydrolase superfamily)
PAKALCKH_00867	1.6e-199				S	Protein of unknown function (DUF3114)
PAKALCKH_00868	4.1e-29	pspC			KT	PspC domain protein
PAKALCKH_00869	5.2e-119	yqfA			K	protein, Hemolysin III
PAKALCKH_00870	1.1e-77				K	hmm pf08876
PAKALCKH_00871	1.1e-223	mvaA	1.1.1.34, 1.1.1.88, 2.3.1.9		C	Belongs to the HMG-CoA reductase family
PAKALCKH_00872	7.4e-214	mvaS	2.3.3.10		I	synthase
PAKALCKH_00873	3.8e-167	thyA	2.1.1.45		F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PAKALCKH_00874	8.4e-90	folA	1.5.1.3, 1.5.1.47, 2.1.1.45, 3.5.4.12		H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PAKALCKH_00875	9.7e-22
PAKALCKH_00876	2.6e-225	clpX			O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PAKALCKH_00877	3.9e-110	engB			D	Necessary for normal cell division and for the maintenance of normal septation
PAKALCKH_00878	2.3e-251	mmuP			E	amino acid
PAKALCKH_00879	8.8e-173	mmuM	1.5.1.20, 2.1.1.10		H	Homocysteine
PAKALCKH_00880	2.2e-30				S	Domain of unknown function (DUF1912)
PAKALCKH_00881	4.8e-13				L	Helix-hairpin-helix DNA-binding motif class 1
PAKALCKH_00882	2.3e-108	plsY	2.3.1.15, 3.5.1.104		I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PAKALCKH_00883	0.0	parE	5.99.1.3		L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAKALCKH_00885	2.4e-10
PAKALCKH_00886	0.0	parC	5.99.1.3		L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAKALCKH_00887	2.4e-200	ilvE	2.6.1.42		E	Aminotransferase
PAKALCKH_00888	1.4e-15				S	Protein of unknown function (DUF2969)
PAKALCKH_00891	2.5e-204	rpsA	1.17.7.4		J	ribosomal protein S1
PAKALCKH_00894	1.9e-107				S	Domain of Unknown Function with PDB structure (DUF3862)
PAKALCKH_00895	6.4e-117				M	Pfam SNARE associated Golgi protein
PAKALCKH_00896	8.6e-229	murN	2.3.2.16		V	FemAB family
PAKALCKH_00897	1.4e-173				S	oxidoreductase
PAKALCKH_00898	6.2e-48	XK27_09445			S	Domain of unknown function (DUF1827)
PAKALCKH_00899	4.3e-85	mutT	3.5.4.33, 3.6.1.13, 3.6.1.55		L	Belongs to the Nudix hydrolase family
PAKALCKH_00900	0.0	clpE			O	Belongs to the ClpA ClpB family
PAKALCKH_00901	1.2e-180	argF	2.1.3.3		E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PAKALCKH_00902	1e-34	ykuJ			S	protein conserved in bacteria
PAKALCKH_00903	1.7e-117	WQ51_01820			P	Binding-protein-dependent transport system inner membrane component
PAKALCKH_00904	6.4e-131	glnQ	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_00905	7e-78	feoA			P	FeoA domain protein
PAKALCKH_00906	0.0	feoB			P	transporter of a GTP-driven Fe(2 ) uptake system
PAKALCKH_00907	6.6e-08
PAKALCKH_00908	8e-148				I	Alpha/beta hydrolase family
PAKALCKH_00909	1.1e-153	folD	1.5.1.5, 3.5.4.9		F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PAKALCKH_00910	5.2e-145	nnrD	4.2.1.136, 5.1.99.6		H	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PAKALCKH_00911	0.0	pbp2b	3.4.16.4		M	penicillin-binding protein
PAKALCKH_00912	1.3e-105	recR			L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PAKALCKH_00913	7.1e-150	licT			K	antiterminator
PAKALCKH_00914	4.6e-88	ybeY	2.6.99.2, 3.5.4.5		S	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PAKALCKH_00915	2e-65	dgkA	2.7.1.107, 2.7.1.66		M	Diacylglycerol kinase
PAKALCKH_00916	1.3e-165	era			M	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PAKALCKH_00917	2.4e-150	fpg	3.2.2.23, 4.2.99.18		L	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
PAKALCKH_00918	1.2e-98	coaE	2.7.1.24, 3.2.2.23, 4.2.99.18	GH23	H	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PAKALCKH_00919	2.2e-117	mdtG			EGP	Major facilitator Superfamily
PAKALCKH_00920	7.4e-92	mdtG			EGP	Major facilitator Superfamily
PAKALCKH_00921	2e-33	secG			U	Preprotein translocase subunit SecG
PAKALCKH_00922	0.0	rnr			J	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
PAKALCKH_00923	1.9e-80	smpB			O	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
PAKALCKH_00924	5.7e-277	ppiB	5.2.1.8		G	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PAKALCKH_00925	1.3e-63	yugI	5.3.1.9		J	RNA binding protein, contains ribosomal protein S1 domain
PAKALCKH_00926	2.4e-195	pepQ	3.4.13.9		E	Belongs to the peptidase M24B family
PAKALCKH_00927	2.4e-181	ccpA			K	Catabolite control protein A
PAKALCKH_00928	3.6e-199	yyaQ			S	YjbR
PAKALCKH_00929	1.8e-193	glxK	2.7.1.165		G	Belongs to the glycerate kinase type-1 family
PAKALCKH_00930	5.3e-75	yueI			S	Protein of unknown function (DUF1694)
PAKALCKH_00931	7.4e-247	eno	4.2.1.11		G	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
PAKALCKH_00932	4.6e-25	WQ51_00785
PAKALCKH_00933	0.0	ltaS	2.7.8.20		M	Belongs to the LTA synthase family
PAKALCKH_00934	2.5e-214	ywbD	2.1.1.191		J	Methyltransferase
PAKALCKH_00935	2.4e-116	aroD	1.1.1.25, 4.2.1.10		E	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
PAKALCKH_00936	5.9e-160	aroE	1.1.1.25		E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PAKALCKH_00937	5.4e-203	aroB	2.7.1.71, 4.2.3.4		E	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PAKALCKH_00938	8.4e-218	aroC	4.2.3.5		E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PAKALCKH_00939	2e-205	tyrA	1.3.1.12, 1.3.1.43		E	prephenate dehydrogenase
PAKALCKH_00940	4.2e-53	yheA			S	Belongs to the UPF0342 family
PAKALCKH_00941	6.5e-168	ldh	1.1.1.27		C	Belongs to the LDH MDH superfamily
PAKALCKH_00942	7.5e-236	aroA	1.3.1.12, 1.3.1.43, 2.5.1.19		E	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
PAKALCKH_00943	1e-76	aroK	1.1.1.25, 2.7.1.71, 4.2.1.10, 4.2.3.4		F	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PAKALCKH_00944	8.8e-153	pheA	4.2.1.51		E	Prephenate dehydratase
PAKALCKH_00945	1.5e-237	msrR			K	Transcriptional regulator
PAKALCKH_00946	2.9e-141	ydiA			P	C4-dicarboxylate transporter malic acid transport
PAKALCKH_00947	7e-203				I	acyl-CoA dehydrogenase
PAKALCKH_00948	2e-97	mip			S	hydroperoxide reductase activity
PAKALCKH_00949	1.6e-252	rumA	2.1.1.190		J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAKALCKH_00950	2.5e-91				Q	Nodulation protein S (NodS)
PAKALCKH_00951	4.8e-45				L	transposase activity
PAKALCKH_00952	8.2e-120				L	Molecular Function DNA binding, Biological Process DNA recombination
PAKALCKH_00953	1.3e-105				K	Transcriptional regulator
PAKALCKH_00954	8.1e-131	ecsA			V	AAA domain, putative AbiEii toxin, Type IV TA system
PAKALCKH_00955	1.3e-253		6.1.1.6		S	Psort location CytoplasmicMembrane, score
PAKALCKH_00956	5.4e-33				S	Protein of unknown function (DUF1648)
PAKALCKH_00957	2.8e-52				K	Transcriptional regulator
PAKALCKH_00958	7.7e-163	aph	2.7.11.1		KLT	Aminoglycoside phosphotransferase
PAKALCKH_00959	6e-106				L	DNA alkylation repair enzyme
PAKALCKH_00960	4.3e-22
PAKALCKH_00961	2e-217				EGP	Transmembrane secretion effector
PAKALCKH_00962	1e-257	yheS_2			S	ATPase components of ABC transporters with duplicated ATPase domains
PAKALCKH_00963	1.1e-49
PAKALCKH_00964	8.7e-60
PAKALCKH_00965	5.9e-55
PAKALCKH_00966	1.5e-36	uvrX	2.7.7.7		L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PAKALCKH_00967	4.8e-111				K	Bacterial regulatory proteins, tetR family
PAKALCKH_00968	6.5e-115				S	ABC-type transport system involved in multi-copper enzyme maturation, permease component
PAKALCKH_00969	3.9e-128	bcrA			V	abc transporter atp-binding protein
PAKALCKH_00970	9.1e-290				V	ABC transporter transmembrane region
PAKALCKH_00971	5.1e-78				P	Mediates zinc uptake. May also transport other divalent cations
PAKALCKH_00972	2.4e-51	zupT			P	Mediates zinc uptake. May also transport other divalent cations
PAKALCKH_00973	1.6e-61	smtB			K	Transcriptional regulator
PAKALCKH_00974	0.0	cadA	3.6.3.3, 3.6.3.5		P	COG2217 Cation transport ATPase
PAKALCKH_00976	5.5e-141				S	hydrolases or acyltransferases (alpha beta hydrolase superfamily)
PAKALCKH_00977	3.7e-73	XK27_04435	3.5.4.5		J	Acetyltransferase GNAT family
PAKALCKH_00978	3.1e-204	yeaN			P	transporter
PAKALCKH_00979	3.2e-150	yitS			S	EDD domain protein, DegV family
PAKALCKH_00980	2.3e-96	XK27_08140			K	Bacterial regulatory proteins, tetR family
PAKALCKH_00981	4.1e-110	cutC			P	Participates in the control of copper homeostasis
PAKALCKH_00983	7.1e-21				S	Domain of unknown function (DUF4767)
PAKALCKH_00984	1.1e-280	norB			P	Major facilitator superfamily
PAKALCKH_00985	1.2e-94	tetR			K	transcriptional regulator
PAKALCKH_00986	5.8e-152				S	Domain of unknown function (DUF4300)
PAKALCKH_00987	2.3e-123				V	CAAX protease self-immunity
PAKALCKH_00988	4.6e-159	fecD			P	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PAKALCKH_00989	7.1e-133	fecE	3.6.3.34		HP	ABC transporter
PAKALCKH_00990	7.7e-175	fatB			P	COG0614 ABC-type Fe3 -hydroxamate transport system, periplasmic component
PAKALCKH_00991	2.9e-125	ybbA			S	Putative esterase
PAKALCKH_00992	2.8e-157	yegS	2.7.1.107		I	Diacylglycerol kinase
PAKALCKH_00993	8.7e-70				S	Domain of unknown function (DUF389)
PAKALCKH_00994	5.5e-31				S	Membrane
PAKALCKH_00995	7.8e-10				S	CsbD-like
PAKALCKH_00996	4.3e-173	pdhD	1.8.1.4		C	Dehydrogenase
PAKALCKH_00997	3.6e-167	acoA			C	Acetoin dehydrogenase E1 component subunit alpha
PAKALCKH_00998	1.3e-174	acoB			C	dehydrogenase E1 component
PAKALCKH_00999	1.6e-142	acoC	2.3.1.12, 2.3.1.61		C	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
PAKALCKH_01000	1.1e-80				Q	Methyltransferase domain
PAKALCKH_01001	1.3e-73				K	TetR family transcriptional regulator
PAKALCKH_01002	1.8e-45
PAKALCKH_01003	5.7e-127				V	CAAX protease self-immunity
PAKALCKH_01004	2.2e-09
PAKALCKH_01005	6.5e-19				M	Bacterial lipoprotein
PAKALCKH_01006	2.4e-60				S	Protein of unknown function (DUF1722)
PAKALCKH_01007	2.4e-62	yqeB			S	Pyrimidine dimer DNA glycosylase
PAKALCKH_01009	5e-52
PAKALCKH_01010	4.1e-99				S	CAAX protease self-immunity
PAKALCKH_01011	2.1e-122	estA			E	GDSL-like Lipase/Acylhydrolase
PAKALCKH_01012	6.2e-103
PAKALCKH_01013	4e-282	sulP			P	Sulfate permease and related transporters (MFS superfamily)
PAKALCKH_01014	1.4e-147	ycgQ			S	TIGR03943 family
PAKALCKH_01015	1e-154	XK27_03015			S	permease
PAKALCKH_01017	0.0	yhgF			K	Transcriptional accessory protein
PAKALCKH_01018	2.2e-41	pspC			KT	PspC domain
PAKALCKH_01019	1.9e-167	hprK			F	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PAKALCKH_01020	2.2e-145	lgt	2.1.1.199		M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PAKALCKH_01021	3.1e-10	WQ51_05790			S	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
PAKALCKH_01022	2.3e-67	ytxH			S	General stress protein
PAKALCKH_01024	8.9e-178	yegQ			O	Peptidase U32
PAKALCKH_01025	1.7e-251	yegQ			O	Peptidase U32
PAKALCKH_01026	1.1e-87	bioY			S	biotin synthase
PAKALCKH_01028	1.1e-33	XK27_12190			S	protein conserved in bacteria
PAKALCKH_01029	7.3e-234	mntH			P	H( )-stimulated, divalent metal cation uptake system
PAKALCKH_01030	8.7e-13
PAKALCKH_01031	3.7e-14
PAKALCKH_01032	7.1e-286	lysS	6.1.1.6		J	Belongs to the class-II aminoacyl-tRNA synthetase family
PAKALCKH_01033	4.3e-138				M	LysM domain
PAKALCKH_01034	8.4e-23
PAKALCKH_01035	5.2e-175				S	hydrolase
PAKALCKH_01037	7.3e-115	pgm6	5.4.2.11, 5.4.2.12		G	Phosphoglycerate mutase
PAKALCKH_01038	7.9e-82	ybaK			S	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAKALCKH_01039	3.6e-139	XK27_00880	3.5.1.28		M	Glycosyl hydrolase, family 25
PAKALCKH_01040	1.2e-26				P	Hemerythrin HHE cation binding domain protein
PAKALCKH_01041	4.6e-157		5.2.1.8		G	hydrolase
PAKALCKH_01042	6.1e-114		1.14.14.5		C	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAKALCKH_01043	2.3e-204	MA20_36090			S	Protein of unknown function (DUF2974)
PAKALCKH_01044	2.3e-131	sdh	1.1.1.276, 1.1.1.313, 1.1.1.381		S	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAKALCKH_01046	5.5e-45				S	Nucleotide pyrophosphohydrolase
PAKALCKH_01047	1.2e-281				L	Uncharacterized conserved protein (DUF2075)
PAKALCKH_01048	2.3e-133				S	PD-(D/E)XK nuclease family transposase
PAKALCKH_01049	0.0		2.4.1.21	GT5	M	Right handed beta helix region
PAKALCKH_01050	8.4e-174	spd			F	DNA RNA non-specific endonuclease
PAKALCKH_01051	7.7e-92	lemA			S	LemA family
PAKALCKH_01052	1.3e-133	htpX			O	Belongs to the peptidase M48B family
PAKALCKH_01053	3.9e-116	sirR			K	iron dependent repressor
PAKALCKH_01054	5.4e-167	sitA			P	Belongs to the bacterial solute-binding protein 9 family
PAKALCKH_01055	3.9e-132	mtsC			P	ABC-type Mn2 Zn2 transport systems, permease components
PAKALCKH_01056	5.6e-127	sitB	3.6.3.35		P	ABC transporter, ATP-binding protein
PAKALCKH_01057	2.1e-74				S	Psort location CytoplasmicMembrane, score
PAKALCKH_01058	2.1e-64				S	Domain of unknown function (DUF4430)
PAKALCKH_01059	0.0	ppc	4.1.1.31		H	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PAKALCKH_01060	1.6e-183	holA	2.7.7.7		L	DNA polymerase III delta subunit
PAKALCKH_01061	9.4e-112	sodA	1.15.1.1		C	radicals which are normally produced within the cells and which are toxic to biological systems
PAKALCKH_01062	1.4e-163		3.5.2.6		V	D-alanyl-D-alanine carboxypeptidase
PAKALCKH_01063	2.7e-104	pilD	3.4.23.43		NOU	Type II secretory pathway prepilin signal peptidase PulO and related peptidases
PAKALCKH_01064	1.1e-89	dps			P	Belongs to the Dps family
PAKALCKH_01065	3.4e-79	perR			P	Belongs to the Fur family
PAKALCKH_01066	7.1e-27	yqgQ			S	protein conserved in bacteria
PAKALCKH_01067	1e-176	glk	2.7.1.2		G	Glucokinase
PAKALCKH_01068	0.0	typA			T	GTP-binding protein TypA
PAKALCKH_01070	3.9e-251	murD	6.3.2.9		M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PAKALCKH_01071	4.7e-199	murG	2.4.1.227	GT28	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PAKALCKH_01072	6.5e-130	divIB			D	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
PAKALCKH_01073	7.1e-224	ftsA			D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
PAKALCKH_01074	4.7e-233	ftsZ			D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PAKALCKH_01075	1.5e-121	ylmE			S	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PAKALCKH_01076	2.2e-86	sepF			D	cell septum assembly
PAKALCKH_01077	5e-30	yggT			D	integral membrane protein
PAKALCKH_01078	6.5e-145	ylmH			S	conserved protein, contains S4-like domain
PAKALCKH_01079	8.4e-138	divIVA			D	Cell division initiation protein
PAKALCKH_01080	0.0	ileS	6.1.1.5		J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PAKALCKH_01081	2.5e-183	nrdF	1.17.4.1		F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAKALCKH_01082	0.0	nrdE	1.17.4.1		F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAKALCKH_01083	6.5e-34	nrdH			O	Glutaredoxin
PAKALCKH_01084	0.0	acnA	4.2.1.3		C	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
PAKALCKH_01085	1.3e-210	citZ	2.3.3.1		C	Belongs to the citrate synthase family
PAKALCKH_01086	1.1e-222	icd	1.1.1.42		C	Isocitrate dehydrogenase
PAKALCKH_01087	3e-38	ptsH			G	phosphocarrier protein Hpr
PAKALCKH_01088	0.0	ptsI	2.7.3.9		G	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAKALCKH_01089	6.6e-265	gapN	1.2.1.9		C	Belongs to the aldehyde dehydrogenase family
PAKALCKH_01090	6.1e-162	XK27_05670			S	Putative esterase
PAKALCKH_01091	2.7e-153	XK27_05675			S	Esterase
PAKALCKH_01092	5.4e-225	XK27_05680	6.3.2.2, 6.3.2.4		M	carbamoylphosphate synthase large subunit
PAKALCKH_01093	5.1e-177	yfmL	3.6.4.13		L	DEAD DEAH box helicase
PAKALCKH_01094	3.1e-113	udk	2.7.1.48		F	Cytidine monophosphokinase
PAKALCKH_01095	0.0	uup			S	abc transporter atp-binding protein
PAKALCKH_01096	2.7e-39	MA20_06245			S	yiaA/B two helix domain
PAKALCKH_01097	2e-132	pip	1.11.1.10		S	Alpha beta hydrolase
PAKALCKH_01098	0.0	mprF	2.3.2.3		J	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PAKALCKH_01099	1.6e-148	cobQ			S	glutamine amidotransferase
PAKALCKH_01100	7.6e-255	murD	3.4.21.10, 6.3.2.13, 6.3.2.9		M	Mur ligase, middle domain protein
PAKALCKH_01101	3.1e-122	dacA	2.7.7.85		S	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PAKALCKH_01102	2.2e-163	ybbR			S	Protein conserved in bacteria
PAKALCKH_01103	1.2e-247	glmM	5.4.2.10		G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PAKALCKH_01104	1.3e-64	gtrA			S	GtrA-like protein
PAKALCKH_01105	4e-119	trmK	2.1.1.217		S	SAM-dependent methyltransferase
PAKALCKH_01106	6.6e-142	yqfO	3.5.4.16		S	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PAKALCKH_01107	7e-142	zupT			P	Mediates zinc uptake. May also transport other divalent cations
PAKALCKH_01108	1.4e-195	yurR	1.4.5.1		E	oxidoreductase
PAKALCKH_01109	6.9e-256				S	phospholipase Carboxylesterase
PAKALCKH_01110	2.4e-161	rfbA	2.7.7.24		M	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PAKALCKH_01111	2.7e-111	rmlC	1.1.1.133, 5.1.3.13		M	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
PAKALCKH_01112	1.3e-204	rfbB	4.2.1.46		M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PAKALCKH_01114	2.2e-30				KT	response to antibiotic
PAKALCKH_01115	2.9e-215	hemN			H	Involved in the biosynthesis of porphyrin-containing compound
PAKALCKH_01116	3.1e-141	fat	3.1.2.21		I	Acyl-ACP thioesterase
PAKALCKH_01117	1.2e-138	nagD	2.7.1.25, 3.1.3.41		G	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
PAKALCKH_01118	2.5e-115	ylfI			S	tigr01906
PAKALCKH_01119	6.7e-136	hisK	3.1.3.15		E	Histidinol phosphatase and related hydrolases of the PHP family
PAKALCKH_01120	4.7e-147	XK27_08080	3.1.1.53		G	Exopolysaccharide biosynthesis protein
PAKALCKH_01121	2.7e-59	XK27_08085
PAKALCKH_01122	3.6e-191	hisC	2.6.1.9		E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PAKALCKH_01123	1.5e-180	hisZ	2.4.2.17, 6.1.1.21		E	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
PAKALCKH_01124	8e-117	hisG	2.4.2.17		E	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity
PAKALCKH_01125	5.1e-232	hisD	1.1.1.23, 1.1.1.308		E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PAKALCKH_01126	3.9e-107	hisB	1.1.1.23, 2.6.1.9, 3.1.3.15, 4.2.1.19		E	imidazoleglycerol-phosphate dehydratase
PAKALCKH_01127	6.1e-111	hisH			E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PAKALCKH_01128	4.5e-129	hisA	5.3.1.16		E	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PAKALCKH_01129	4.7e-137	hisF	3.5.4.19, 3.6.1.31		E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
PAKALCKH_01130	1e-59	hisI	3.5.4.19, 3.5.4.25, 3.6.1.31, 5.3.1.16		E	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PAKALCKH_01131	9.1e-50	hisE	3.5.4.19, 3.6.1.31, 5.3.1.16		E	phosphoribosyl-ATP diphosphatase activity
PAKALCKH_01132	3.6e-19
PAKALCKH_01133	1.2e-94	XK27_05505			S	Psort location CytoplasmicMembrane, score
PAKALCKH_01134	1.6e-143				P	molecular chaperone
PAKALCKH_01135	4.2e-98				S	Carbohydrate-binding domain-containing protein Cthe_2159
PAKALCKH_01136	2e-178	XK27_08075			M	glycosyl transferase family 2
PAKALCKH_01137	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_01138	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_01139	1.7e-100				L	COG3547 Transposase and inactivated derivatives
PAKALCKH_01140	4.1e-57				L	transposase IS116 IS110 IS902 family
PAKALCKH_01141	1.5e-14				L	COG3547 Transposase and inactivated derivatives
PAKALCKH_01142	2e-42	mccF			V	LD-carboxypeptidase
PAKALCKH_01143	1.3e-163				L	High confidence in function and specificity
PAKALCKH_01144	0.0		2.4.1.5	GH13	M	KxYKxGKxW signal domain protein
PAKALCKH_01145	1.1e-230	rodA			D	Belongs to the SEDS family
PAKALCKH_01146	3.2e-245	hflX			S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PAKALCKH_01147	2.4e-113	galT	2.7.7.12		G	UDPglucose--hexose-1-phosphate uridylyltransferase
PAKALCKH_01148	2.7e-174	rnz	3.1.26.11		S	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
PAKALCKH_01149	1.8e-136	XK27_05435	1.1.1.100		S	Belongs to the short-chain dehydrogenases reductases (SDR) family
PAKALCKH_01150	6.8e-22				Q	Methyltransferase domain
PAKALCKH_01151	1.3e-64	GnaT	2.5.1.16		K	acetyltransferase
PAKALCKH_01152	0.0	recJ			L	Single-strand DNA-specific exonuclease, C terminal domain
PAKALCKH_01153	1.7e-93	apt	2.4.2.7		F	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PAKALCKH_01154	1.1e-180	metA	2.3.1.46		E	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PAKALCKH_01155	6.5e-125	dnaD
PAKALCKH_01156	3.8e-119	nth	4.2.99.18		L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PAKALCKH_01158	1.5e-231	xseA	3.1.11.6		L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAKALCKH_01159	4.6e-29	xseB	3.1.11.6		L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAKALCKH_01160	5.2e-156	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90		H	Belongs to the FPP GGPP synthase family
PAKALCKH_01161	1.1e-147	rrmJ	2.1.1.226, 2.1.1.227		J	Ribosomal RNA large subunit methyltransferase J
PAKALCKH_01162	8.3e-73	argR			K	Regulates arginine biosynthesis genes
PAKALCKH_01163	2.5e-300	recN			L	May be involved in recombinational repair of damaged DNA
PAKALCKH_01164	1.7e-148	DegV			S	DegV family
PAKALCKH_01165	1.7e-154	ypmR			E	COG2755 Lysophospholipase L1 and related esterases
PAKALCKH_01166	1.4e-93	ypmS			S	Protein conserved in bacteria
PAKALCKH_01167	6.3e-39	hup			L	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PAKALCKH_01169	8.9e-178	pyrD	1.3.1.14, 1.3.98.1		F	Catalyzes the conversion of dihydroorotate to orotate
PAKALCKH_01170	2.1e-131	gpmA	5.4.2.11		G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PAKALCKH_01171	5.5e-289	leuA	2.3.3.13		E	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PAKALCKH_01172	1.9e-189	leuB	1.1.1.85		CE	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
PAKALCKH_01173	1.3e-36	ysdA			L	Membrane
PAKALCKH_01174	1.2e-276	leuC	4.2.1.33, 4.2.1.35		E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PAKALCKH_01175	2.4e-112	leuD	4.2.1.33, 4.2.1.35		E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PAKALCKH_01176	0.0	dnaE	2.7.7.7		L	DNA polymerase
PAKALCKH_01177	1e-187	pfkA	2.7.1.11		F	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
PAKALCKH_01178	2.7e-277	pyk	2.7.1.40, 2.7.7.4		G	Belongs to the pyruvate kinase family
PAKALCKH_01179	1.5e-131				T	PhoQ Sensor
PAKALCKH_01180	1.9e-121				T	Xre family transcriptional regulator
PAKALCKH_01181	5.4e-110	drgA			C	nitroreductase
PAKALCKH_01182	8.2e-96	yoaK			S	Protein of unknown function (DUF1275)
PAKALCKH_01183	5.8e-11				S	identified by fungal homology comparisons and RT-PCR
PAKALCKH_01184	1.6e-123				L	Helix-turn-helix domain
PAKALCKH_01185	3.2e-145				L	Integrase core domain protein
PAKALCKH_01186	4.6e-94	dnaQ	2.7.7.7		L	DNA polymerase III
PAKALCKH_01187	2.1e-126				K	transcriptional regulator, MerR family
PAKALCKH_01188	0.0				V	ABC transporter (Permease
PAKALCKH_01189	1.9e-124				V	abc transporter atp-binding protein
PAKALCKH_01191	3.9e-42	yaaK			S	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PAKALCKH_01192	1.3e-191				L	Pfam:Integrase_AP2
PAKALCKH_01193	5.6e-20				S	Domain of unknown function (DUF3173)
PAKALCKH_01194	7.2e-85				S	Plasmid replication protein
PAKALCKH_01195	9.1e-54
PAKALCKH_01196	4e-182				D	COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins
PAKALCKH_01197	5.7e-44
PAKALCKH_01201	4.6e-116
PAKALCKH_01202	1.6e-152				O	AAA domain (Cdc48 subfamily)
PAKALCKH_01204	8.8e-47
PAKALCKH_01205	6.2e-48
PAKALCKH_01206	1.1e-44
PAKALCKH_01207	4.5e-78
PAKALCKH_01208	3.4e-93
PAKALCKH_01209	5.7e-23		3.2.1.26	GH32	G	Glycosyl hydrolase family 32
PAKALCKH_01210	0.0	ctpE			P	E1-E2 ATPase
PAKALCKH_01211	2e-58
PAKALCKH_01212	1.2e-40	pchB	2.5.1.19, 4.2.1.10, 4.2.99.21, 5.4.99.5		E	Chorismate mutase type II
PAKALCKH_01213	2.8e-257	trpE	4.1.3.27		EH	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PAKALCKH_01214	8e-105	trpG	2.4.2.18, 2.6.1.85, 4.1.3.27		EH	anthranilate
PAKALCKH_01215	5.6e-178	trpD	2.4.2.18, 4.1.3.27		F	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PAKALCKH_01216	3.2e-133	trpC	4.1.1.48, 5.3.1.24		E	Belongs to the TrpC family
PAKALCKH_01217	2e-98	trpF	4.1.1.48, 4.2.1.160, 4.2.1.20, 5.3.1.24		E	belongs to the TrpF family
PAKALCKH_01218	3.4e-230	trpB	4.2.1.20, 5.3.1.24		E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
PAKALCKH_01219	1.3e-142	trpA	4.2.1.20		E	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
PAKALCKH_01221	1e-18				S	AAA domain, putative AbiEii toxin, Type IV TA system
PAKALCKH_01223	3.2e-74	copY			K	negative regulation of transcription, DNA-templated
PAKALCKH_01224	0.0	copA	3.6.3.54		P	P-type ATPase
PAKALCKH_01225	2.7e-31	copZ	2.7.7.77		P	Heavy metal-associated domain protein
PAKALCKH_01226	7.9e-191	ddl	6.3.2.4		F	Belongs to the D-alanine--D-alanine ligase family
PAKALCKH_01227	3e-114	papP			P	ABC transporter (Permease
PAKALCKH_01228	9.5e-113				P	ABC transporter (Permease
PAKALCKH_01229	1.5e-135	glnQ	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_01230	3.3e-155	cjaA			ET	ABC transporter substrate-binding protein
PAKALCKH_01234	1.7e-254	murF	6.3.2.10		M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
PAKALCKH_01235	1.8e-116	ywaF			S	Integral membrane protein (intg_mem_TP0381)
PAKALCKH_01236	2.3e-300	prfC			J	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PAKALCKH_01237	3.1e-96	thiT			S	Thiamine transporter
PAKALCKH_01238	2.5e-62	yjqA			S	Bacterial PH domain
PAKALCKH_01239	6.7e-154	corA			P	CorA-like protein
PAKALCKH_01240	1.7e-258	cshA	3.6.4.13		JKL	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
PAKALCKH_01241	3.9e-41	yazA			L	endonuclease containing a URI domain
PAKALCKH_01242	9.2e-125	yabB	2.1.1.223		L	Methyltransferase
PAKALCKH_01243	4e-154	nodB3			G	Polysaccharide deacetylase
PAKALCKH_01244	9.2e-141	plsC	2.3.1.51		I	Acyltransferase
PAKALCKH_01245	4.9e-88	comEA			L	COG1555 DNA uptake protein and related DNA-binding proteins
PAKALCKH_01246	0.0	comEC			S	Competence protein ComEC
PAKALCKH_01247	5.5e-231	murA	2.5.1.7		M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PAKALCKH_01248	2.8e-99	XK27_07830	2.3.1.128		J	Acetyltransferase GNAT Family
PAKALCKH_01249	1.5e-231	ytoI			K	transcriptional regulator containing CBS domains
PAKALCKH_01250	1.1e-166	map	3.4.11.18		E	Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed
PAKALCKH_01251	2.8e-163	rbn			E	Belongs to the UPF0761 family
PAKALCKH_01252	1.7e-85	ccl			S	cog cog4708
PAKALCKH_01253	0.0	ligA	6.5.1.2		L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PAKALCKH_01254	2e-183	yegS	2.7.1.107		I	Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
PAKALCKH_01256	1.2e-169	yfjR			K	regulation of single-species biofilm formation
PAKALCKH_01258	3.9e-68				S	QueT transporter
PAKALCKH_01259	1.4e-158	xth	3.1.11.2		L	exodeoxyribonuclease III
PAKALCKH_01261	3.1e-62	XK27_00915			C	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PAKALCKH_01262	3.7e-17	yjdB			S	Domain of unknown function (DUF4767)
PAKALCKH_01263	1.1e-166	tehB	2.1.1.265		PQ	tellurite resistance protein tehb
PAKALCKH_01264	3.2e-165				O	protein import
PAKALCKH_01265	2.6e-124	agrA			KT	phosphorelay signal transduction system
PAKALCKH_01266	4.8e-201		2.7.13.3		T	protein histidine kinase activity
PAKALCKH_01268	2.4e-43	rpsP			J	Belongs to the bacterial ribosomal protein bS16 family
PAKALCKH_01269	3.5e-36	ylqC			L	Belongs to the UPF0109 family
PAKALCKH_01270	7.4e-236	folC	6.3.2.12, 6.3.2.17		H	Belongs to the folylpolyglutamate synthase family
PAKALCKH_01271	0.0	ydaO			E	amino acid
PAKALCKH_01272	7.7e-100	folE	3.5.4.16		F	gtp cyclohydrolase
PAKALCKH_01273	4.5e-146	folP	2.5.1.15, 2.7.6.3		H	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PAKALCKH_01274	1.7e-292	amy	3.2.1.1	GH13	G	Belongs to the glycosyl hydrolase 13 family
PAKALCKH_01275	1.3e-60	folB	1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8		H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PAKALCKH_01276	8.2e-82	folK	2.7.6.3, 4.1.2.25		H	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PAKALCKH_01277	3.1e-167	murB	1.3.1.98		M	cell wall formation
PAKALCKH_01278	5.2e-212	potA	3.6.3.30, 3.6.3.31		P	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
PAKALCKH_01279	1.8e-139	potB			P	ABC-type spermidine putrescine transport system, permease component I
PAKALCKH_01280	2.3e-131	potC			P	ABC-type spermidine putrescine transport system, permease component II
PAKALCKH_01281	2.6e-205	potD			P	spermidine putrescine ABC transporter
PAKALCKH_01282	1.9e-145	XK27_08050			O	HflC and HflK could regulate a protease
PAKALCKH_01283	1.8e-71	gloA	4.4.1.5		E	Lactoylglutathione lyase
PAKALCKH_01284	2e-158				GK	ROK family
PAKALCKH_01285	1.1e-208	serC	2.6.1.52		E	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PAKALCKH_01286	1.9e-103	wecD			M	Acetyltransferase (GNAT) domain
PAKALCKH_01287	7.7e-219	serA	1.1.1.399, 1.1.1.95		EH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAKALCKH_01288	8.3e-74	ogt	2.1.1.63, 3.2.2.20		L	methylated-DNA-[protein]-cysteine S-methyltransferase activity
PAKALCKH_01289	2.7e-58	arsC	1.20.4.1		P	Belongs to the ArsC family
PAKALCKH_01291	3.5e-56	lrgA			S	Effector of murein hydrolase LrgA
PAKALCKH_01292	1.6e-115	lrgB			M	Inhibits the expression or activity of extracellular murein hydrolases by interacting, possibly with LrgA, with the holin-like proteins CidA and or CidB. The LrgAB and CidAB proteins may affect the proton motive force of the membrane. May be involved in programmed cell death (PCD), possibly triggering PCD in response to antibiotics and environmental stresses
PAKALCKH_01293	3.2e-98		3.1.3.18		S	IA, variant 1
PAKALCKH_01294	0.0	gyrB	5.99.1.3		L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAKALCKH_01295	6.4e-299	ezrA			D	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
PAKALCKH_01296	4.1e-113	serB	3.1.3.3		E	phosphoserine phosphatase
PAKALCKH_01297	1.5e-07				N	PFAM Uncharacterised protein family UPF0150
PAKALCKH_01298	3.6e-152				EG	Permeases of the drug metabolite transporter (DMT) superfamily
PAKALCKH_01300	1.9e-62	ycaO			O	OsmC-like protein
PAKALCKH_01301	2.5e-62	paaI			Q	protein possibly involved in aromatic compounds catabolism
PAKALCKH_01302	4.4e-10				O	ADP-ribosylglycohydrolase
PAKALCKH_01303	3.7e-131	rsuA	5.4.99.19, 5.4.99.22		J	Belongs to the pseudouridine synthase RsuA family
PAKALCKH_01305	6.7e-248	obg			S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PAKALCKH_01306	1.7e-17	XK27_00735
PAKALCKH_01307	1.6e-134	glnQ	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_01308	0.0	glnP			P	ABC-type amino acid transport signal transduction systems periplasmic component domain
PAKALCKH_01309	2.1e-163				S	CAAX amino terminal protease family protein
PAKALCKH_01311	0.0	uvrB			L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
PAKALCKH_01312	2.3e-78	mutT	3.6.1.55		F	Nudix family
PAKALCKH_01313	4.6e-138				ET	ABC transporter
PAKALCKH_01314	3.2e-136				ET	Belongs to the bacterial solute-binding protein 3 family
PAKALCKH_01315	7.3e-211	arcT	2.6.1.1		E	Aminotransferase
PAKALCKH_01316	5.7e-133	gltS			ET	Belongs to the bacterial solute-binding protein 3 family
PAKALCKH_01317	3.2e-20	rpsU			J	Belongs to the bacterial ribosomal protein bS21 family
PAKALCKH_01318	2.1e-48	mscL			M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
PAKALCKH_01319	0.0	dnaG			L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
PAKALCKH_01320	4e-201	sigA			K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PAKALCKH_01321	3.4e-55	yitW			K	metal-sulfur cluster biosynthetic enzyme
PAKALCKH_01322	4e-170	yfdH		GT2	M	COG0463, glycosyltransferases involved in cell wall biogenesis
PAKALCKH_01323	1.3e-159	rfbD	1.1.1.133, 5.1.3.13		M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
PAKALCKH_01324	1e-88				S	Psort location CytoplasmicMembrane, score
PAKALCKH_01325	4.3e-220	amrA			S	membrane protein involved in the export of O-antigen and teichoic acid
PAKALCKH_01326	3e-176				M	Glycosyltransferase group 2 family protein
PAKALCKH_01327	9.2e-127	arnC			M	group 2 family protein
PAKALCKH_01328	3.2e-43				S	Uncharacterized conserved protein (DUF2304)
PAKALCKH_01329	1.7e-150		2.4.1.60		S	Glycosyltransferase group 2 family protein
PAKALCKH_01330	7e-93				S	Psort location CytoplasmicMembrane, score
PAKALCKH_01331	0.0	rgpF		GT2,GT4	M	Glycosyltransferase like family 2
PAKALCKH_01332	6.6e-221				M	Psort location CytoplasmicMembrane, score
PAKALCKH_01333	1.6e-230			GT4	M	transferase activity, transferring glycosyl groups
PAKALCKH_01334	1.8e-225	rgpA		GT4	M	Domain of unknown function (DUF1972)
PAKALCKH_01335	2.4e-175	rgpB		GT2	M	Glycosyltransferase, group 2 family protein
PAKALCKH_01336	6.8e-142	rgpC			GM	Transport permease protein
PAKALCKH_01337	4e-223	rgpD	3.6.3.38		P	Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system
PAKALCKH_01338	3.8e-301	rgpF			M	Rhamnan synthesis protein F
PAKALCKH_01339	1.5e-118	radC			E	Belongs to the UPF0758 family
PAKALCKH_01340	9.7e-129	puuD			T	peptidase C26
PAKALCKH_01341	1.9e-118	rex			K	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PAKALCKH_01342	1.4e-59	XK27_04120			S	Putative amino acid metabolism
PAKALCKH_01343	6.4e-207	iscS	2.8.1.7		E	Cysteine desulfurase
PAKALCKH_01344	4.3e-175	prs	2.7.6.1		F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAKALCKH_01345	2.4e-101	yjbK			S	Adenylate cyclase
PAKALCKH_01346	3.9e-119	yjbM	2.7.6.5		S	Gtp pyrophosphokinase
PAKALCKH_01347	7.5e-152	nadK	2.7.1.23		H	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PAKALCKH_01348	3.5e-171	rluD	5.4.99.23, 5.4.99.28, 5.4.99.29		J	Responsible for synthesis of pseudouridine from uracil
PAKALCKH_01349	3.7e-174	pta	2.3.1.8, 3.6.3.21		C	phosphate acetyltransferase
PAKALCKH_01350	0.0	amiA			E	ABC transporter, substrate-binding protein, family 5
PAKALCKH_01351	4.8e-306	amiA			E	ABC transporter, substrate-binding protein, family 5
PAKALCKH_01352	1.1e-275	amiC			P	ABC transporter (Permease
PAKALCKH_01353	4.1e-167	amiD			P	ABC transporter (Permease
PAKALCKH_01354	5.4e-203	oppD			P	Belongs to the ABC transporter superfamily
PAKALCKH_01355	8e-171	oppF			P	Belongs to the ABC transporter superfamily
PAKALCKH_01356	3.8e-129				V	Psort location CytoplasmicMembrane, score
PAKALCKH_01357	3.1e-119	skfE			V	abc transporter atp-binding protein
PAKALCKH_01358	5.6e-62	yvoA_1			K	Transcriptional
PAKALCKH_01359	1.4e-147	supH			S	overlaps another CDS with the same product name
PAKALCKH_01360	7.1e-147	XK27_02985			S	overlaps another CDS with the same product name
PAKALCKH_01361	7e-195	ftsY			U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
PAKALCKH_01362	8.8e-113	gmk	2.7.4.8		F	Essential for recycling GMP and indirectly, cGMP
PAKALCKH_01363	3.6e-46	rpoZ	2.7.7.6		K	DNA-directed 5'-3' RNA polymerase activity
PAKALCKH_01364	0.0	priA			L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PAKALCKH_01365	5.2e-170	fmt	2.1.2.9		J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PAKALCKH_01366	1.7e-243	sun	2.1.1.176		J	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PAKALCKH_01367	1e-134	stp	3.1.3.16		T	phosphatase
PAKALCKH_01368	1.2e-293	prkC	2.7.11.1		KLT	serine threonine protein kinase
PAKALCKH_01369	6.9e-104	kcsA			P	Ion transport protein
PAKALCKH_01370	5e-117	yvqF			S	Membrane
PAKALCKH_01371	5.7e-170	vraS	2.7.13.3		T	Histidine kinase
PAKALCKH_01372	1.4e-113	vraR			K	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PAKALCKH_01375	9.9e-94	rimM			J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PAKALCKH_01376	1.9e-135	trmD	2.1.1.228, 4.6.1.12		J	Belongs to the RNA methyltransferase TrmD family
PAKALCKH_01377	3.9e-187	trxB1	1.18.1.2, 1.19.1.1		C	Ferredoxin--NADP reductase
PAKALCKH_01378	0.0	ftsK			D	Belongs to the FtsK SpoIIIE SftA family
PAKALCKH_01379	0.0	pulA	3.2.1.41	CBM48,GH13	G	belongs to the glycosyl hydrolase 13 family
PAKALCKH_01380	0.0	glgB	2.4.1.18, 3.2.1.141, 3.2.1.20	CBM48,GH13,GH31	G	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PAKALCKH_01381	3.5e-184	glgC	2.7.7.27		H	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
PAKALCKH_01382	6.4e-178	glgD	2.4.1.21, 2.7.7.27	GT5	G	glucose-1-phosphate adenylyltransferase
PAKALCKH_01383	1.7e-281	glgA	2.4.1.21	GT5	G	Synthesizes alpha-1,4-glucan chains using ADP-glucose
PAKALCKH_01384	0.0	glgP	2.4.1.1	GT35	G	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PAKALCKH_01385	7.6e-100		2.3.1.128		K	Acetyltransferase GNAT Family
PAKALCKH_01386	1.6e-285				S	Protein of unknown function (DUF3114)
PAKALCKH_01388	0.0	gshF	6.3.2.2, 6.3.2.29, 6.3.2.30, 6.3.2.4		H	Belongs to the glutamate--cysteine ligase type 1 family
PAKALCKH_01389	6.1e-297				V	abc transporter atp-binding protein
PAKALCKH_01390	0.0				V	abc transporter atp-binding protein
PAKALCKH_01391	2.6e-187	XK27_10075			S	abc transporter atp-binding protein
PAKALCKH_01392	6.4e-10
PAKALCKH_01394	0.0				M	domain protein
PAKALCKH_01396	1.3e-224				L	Transposase
PAKALCKH_01397	9.1e-42	WQ51_02910			S	Protein of unknown function, DUF536
PAKALCKH_01398	3.7e-63	XK27_02560			S	cog cog2151
PAKALCKH_01399	0.0	ilvD	4.2.1.9		E	Belongs to the IlvD Edd family
PAKALCKH_01400	1.5e-222	ytfP			S	Flavoprotein
PAKALCKH_01402	2e-120	trmB	2.1.1.297, 2.1.1.33		J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
PAKALCKH_01403	7.1e-152	ytmP	2.7.1.89		M	Phosphotransferase
PAKALCKH_01404	1e-174	ecsB			U	Bacterial ABC transporter protein EcsB
PAKALCKH_01405	3.7e-131	ecsA			V	abc transporter atp-binding protein
PAKALCKH_01406	1e-72	hit			FG	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
PAKALCKH_01407	4.1e-07
PAKALCKH_01409	8e-103
PAKALCKH_01411	0.0	clpL			O	ATP-dependent Clp protease ATP-binding subunit
PAKALCKH_01412	1.6e-44	yoeB			S	Addiction module toxin, Txe YoeB family
PAKALCKH_01413	3.4e-39	yefM	2.3.1.15		D	Antitoxin component of a toxin-antitoxin (TA) module
PAKALCKH_01414	3.4e-197	ylbM			S	Belongs to the UPF0348 family
PAKALCKH_01415	2.9e-139	yqeM			Q	Methyltransferase domain protein
PAKALCKH_01416	2e-58	rsfS			J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
PAKALCKH_01417	3.5e-103	nadD	2.7.6.3, 2.7.7.18		H	HD superfamily hydrolase involved in NAD metabolism
PAKALCKH_01418	1e-116	nadD	2.7.7.18, 3.6.1.55		H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PAKALCKH_01419	7.7e-49	yhbY			J	RNA-binding protein
PAKALCKH_01420	7.1e-214	yqeH			S	in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
PAKALCKH_01421	1.4e-98	yqeG			S	hydrolase of the HAD superfamily
PAKALCKH_01422	6.3e-152	yicL			EG	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
PAKALCKH_01423	1.5e-189	bdhA	1.1.1.303, 1.1.1.4		E	Dehydrogenase
PAKALCKH_01424	2.4e-60
PAKALCKH_01425	1.8e-216	celD			G	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PAKALCKH_01426	8.5e-58
PAKALCKH_01427	5e-40	celC	2.7.1.196, 2.7.1.205		G	Phosphotransferase system cellobiose-specific component IIA
PAKALCKH_01428	1.8e-273	celR	2.7.1.194, 2.7.1.202, 2.7.1.204		GKT	Mga helix-turn-helix domain
PAKALCKH_01429	1.6e-46	celB	2.7.1.196, 2.7.1.205, 2.7.1.207		G	PTS system, Lactose/Cellobiose specific IIB subunit
PAKALCKH_01430	7.2e-31				S	PQ loop repeat
PAKALCKH_01431	1.2e-282	celA	3.2.1.86	GT1	G	Belongs to the glycosyl hydrolase 1 family
PAKALCKH_01433	3.9e-273	gatB	6.1.1.12, 6.3.5.6, 6.3.5.7		J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAKALCKH_01434	1.9e-267	gatA	6.3.5.6, 6.3.5.7		J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
PAKALCKH_01435	1.8e-47	gatC	6.3.5.6, 6.3.5.7		J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAKALCKH_01436	1.3e-236		2.4.1.52	GT4	M	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PAKALCKH_01437	3.8e-187				M	A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PAKALCKH_01438	9.7e-158				H	COG0463 Glycosyltransferases involved in cell wall biogenesis
PAKALCKH_01439	1e-218				M	lipopolysaccharide 3-alpha-galactosyltransferase activity
PAKALCKH_01440	2.6e-293	ascB	3.2.1.86	GT1	G	Belongs to the glycosyl hydrolase 1 family
PAKALCKH_01441	2.9e-99	pncA			Q	isochorismatase
PAKALCKH_01442	6.9e-139	codY			K	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
PAKALCKH_01443	7.6e-238	alaA	2.6.1.2, 2.6.1.66		E	Aminotransferase
PAKALCKH_01444	9e-75	XK27_03180			T	universal stress protein
PAKALCKH_01446	2e-157	pflA	1.97.1.4		C	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PAKALCKH_01447	2.5e-10				MU	outer membrane autotransporter barrel domain protein
PAKALCKH_01448	3.8e-238	hlyX			S	COG1253 Hemolysins and related proteins containing CBS domains
PAKALCKH_01449	5.6e-141	modF	3.6.3.21, 3.6.3.34		P	abc transporter atp-binding protein
PAKALCKH_01450	0.0	yjcE			P	NhaP-type Na H and K H antiporters
PAKALCKH_01452	2.7e-97	ytqB			J	(SAM)-dependent
PAKALCKH_01453	5.4e-183	yhcC			S	radical SAM protein
PAKALCKH_01454	9.3e-187	ylbL			T	Belongs to the peptidase S16 family
PAKALCKH_01455	1.7e-87	coaD	2.7.7.3		H	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PAKALCKH_01456	1.3e-91	rsmD	2.1.1.171		L	Methyltransferase
PAKALCKH_01457	2.1e-171	trxB	1.8.1.9		C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PAKALCKH_01458	5e-10				S	Protein of unknown function (DUF4059)
PAKALCKH_01459	4.7e-129	tcyN	3.6.3.21		E	abc transporter atp-binding protein
PAKALCKH_01460	6.8e-162	yxeN			P	ABC transporter (Permease
PAKALCKH_01461	3.3e-15	yxeM			ET	ABC-type amino acid transport signal transduction systems, periplasmic component domain
PAKALCKH_01462	1.5e-152	yxeM			ET	ABC-type amino acid transport signal transduction systems, periplasmic component domain
PAKALCKH_01463	2.8e-35
PAKALCKH_01464	6.8e-201	dinB	2.7.7.7		L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PAKALCKH_01465	0.0	pflB	2.3.1.54		C	formate acetyltransferase'
PAKALCKH_01466	4.3e-141	cah	4.2.1.1		P	carbonic anhydrase
PAKALCKH_01467	2e-74	yjcF			S	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PAKALCKH_01469	5.5e-175	ampC			V	COG1680 Beta-lactamase class C and other penicillin binding proteins
PAKALCKH_01470	9.2e-141	cppA			E	CppA N-terminal
PAKALCKH_01471	1.4e-92				V	CAAX protease self-immunity
PAKALCKH_01472	4.7e-149	gla			U	Belongs to the MIP aquaporin (TC 1.A.8) family
PAKALCKH_01473	0.0	pepX	3.4.14.11		E	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
PAKALCKH_01474	3.7e-45	spiA			K	sequence-specific DNA binding
PAKALCKH_01477	1.8e-133	agrA			KT	LytTr DNA-binding domain
PAKALCKH_01478	1.9e-218	blpH	2.7.13.3		T	signal transduction protein with a C-terminal ATPase domain
PAKALCKH_01483	2.5e-25				S	Bacteriocin class II with double-glycine leader peptide
PAKALCKH_01484	0.0	mdlB			V	abc transporter atp-binding protein
PAKALCKH_01485	0.0	mdlA			V	abc transporter atp-binding protein
PAKALCKH_01488	1.2e-91	XK27_09885			V	Glycopeptide antibiotics resistance protein
PAKALCKH_01489	5.1e-223	rlmN	2.1.1.192		J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
PAKALCKH_01490	5.7e-63	yutD			J	protein conserved in bacteria
PAKALCKH_01491	1.1e-259	yunD	3.1.3.5		F	Belongs to the 5'-nucleotidase family
PAKALCKH_01493	7.2e-221	cshB	3.6.4.13		JKL	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
PAKALCKH_01494	1.1e-184	mraY	2.7.8.13		M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PAKALCKH_01495	0.0	ftsI	3.4.16.4		M	penicillin-binding protein
PAKALCKH_01496	4e-45	ftsL			D	cell division protein FtsL
PAKALCKH_01497	3.9e-173	rsmH	2.1.1.199		J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
PAKALCKH_01498	2.4e-07
PAKALCKH_01499	6.8e-63
PAKALCKH_01502	1.4e-42	yhaI			J	Protein of unknown function (DUF805)
PAKALCKH_01503	1.3e-61	yhaI			J	Protein of unknown function (DUF805)
PAKALCKH_01504	4.6e-59	yhaI			J	Membrane
PAKALCKH_01505	2.7e-222	proA	1.2.1.41		E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PAKALCKH_01506	7.5e-141	proB	2.7.2.11		E	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PAKALCKH_01507	3.5e-275	XK27_00765
PAKALCKH_01508	3.1e-133	ecsA_2			V	abc transporter atp-binding protein
PAKALCKH_01509	4.7e-126				S	Protein of unknown function (DUF554)
PAKALCKH_01510	0.0	addA	3.6.4.12		L	ATP-dependent helicase nuclease subunit A
PAKALCKH_01511	0.0	rexB	3.1.21.3, 3.6.4.12		L	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
PAKALCKH_01512	4.7e-244		2.7.13.3		T	protein histidine kinase activity
PAKALCKH_01513	1.1e-234	dcuS	2.7.13.3		T	protein histidine kinase activity
PAKALCKH_01514	5.2e-14
PAKALCKH_01517	5.8e-146				V	Psort location CytoplasmicMembrane, score
PAKALCKH_01519	1.7e-298				O	MreB/Mbl protein
PAKALCKH_01520	7e-119	liaI			S	membrane
PAKALCKH_01521	8.8e-75	XK27_02470			K	LytTr DNA-binding domain protein
PAKALCKH_01522	4.3e-303				KT	response to antibiotic
PAKALCKH_01523	1.3e-93	yebC			M	Membrane
PAKALCKH_01524	2.4e-259	XK27_03190	5.2.1.8		S	hydrolases of the HAD superfamily
PAKALCKH_01525	7.1e-178	ansA	3.5.1.1		EJ	COG0252 L-asparaginase archaeal Glu-tRNAGln amidotransferase subunit D
PAKALCKH_01527	2.4e-30	yozG			K	Transcriptional regulator
PAKALCKH_01531	0.0	recG	3.6.4.12		L	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PAKALCKH_01532	2.1e-202	alr	5.1.1.1, 5.1.1.5		E	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PAKALCKH_01533	5.8e-61	acpS	2.7.6.3, 2.7.8.7, 5.1.1.1		I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
PAKALCKH_01534	1.6e-196	aroF	2.5.1.54		E	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PAKALCKH_01535	4.7e-196	aroF	2.5.1.54		E	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PAKALCKH_01536	0.0	secA			U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PAKALCKH_01538	9.6e-188	manA	5.3.1.8		G	mannose-6-phosphate isomerase
PAKALCKH_01539	2e-171	scrK	2.7.1.2, 2.7.1.4		GK	Fructokinase
PAKALCKH_01540	0.0	scrA	2.7.1.201, 2.7.1.208, 2.7.1.211		G	pts system
PAKALCKH_01541	7.8e-290	scrB	3.2.1.26, 3.2.1.80	GH32	G	invertase
PAKALCKH_01542	9.2e-178	scrR			K	Transcriptional regulator
PAKALCKH_01543	8.1e-73	nusB			K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PAKALCKH_01544	1.7e-61	yqhY			S	protein conserved in bacteria
PAKALCKH_01545	1.2e-97	efp			J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAKALCKH_01546	3.3e-85	comEB	3.5.4.12		F	ComE operon protein 2
PAKALCKH_01547	7e-187	pepP	3.4.11.9, 3.4.13.9		E	Belongs to the peptidase M24B family
PAKALCKH_01549	1.3e-145				V	'abc transporter, ATP-binding protein
PAKALCKH_01556	0.0	uvrA			L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PAKALCKH_01557	4.2e-167	corA			P	COG0598 Mg2 and Co2 transporters
PAKALCKH_01558	5e-122	XK27_01040			S	Protein of unknown function (DUF1129)
PAKALCKH_01560	1.7e-35	rpsR			J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PAKALCKH_01561	9.7e-83	ssb			L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PAKALCKH_01562	3e-47	rpsF			J	Binds together with S18 to 16S ribosomal RNA
PAKALCKH_01563	2.8e-41	XK27_05745
PAKALCKH_01564	1.6e-221	mutY			L	A G-specific adenine glycosylase
PAKALCKH_01567	5.2e-36
PAKALCKH_01569	0.0	polA	2.7.7.7		L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PAKALCKH_01570	0.0	mutS2			L	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PAKALCKH_01571	5.3e-90	cvpA			S	toxin biosynthetic process
PAKALCKH_01572	1.4e-26	zapA			D	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
PAKALCKH_01573	2.2e-154	rnhC	3.1.26.4		L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAKALCKH_01574	1.5e-115	lepB	3.4.21.89		U	Belongs to the peptidase S26 family
PAKALCKH_01575	0.0	recD2	3.1.11.5		L	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
PAKALCKH_01576	1.3e-46	azlD			S	branched-chain amino acid
PAKALCKH_01577	9.7e-113	azlC			E	AzlC protein
PAKALCKH_01578	6.2e-185	tsaD	2.3.1.234		O	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PAKALCKH_01579	5.9e-71	rimI	2.3.1.128		K	This enzyme acetylates the N-terminal alanine of ribosomal protein S18
PAKALCKH_01580	7.9e-115	yeaZ	2.3.1.234		O	COG1214, inactive homolog of metal-dependent proteases
PAKALCKH_01581	1.5e-33	ykzG			S	Belongs to the UPF0356 family
PAKALCKH_01582	0.0	rnjA			S	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAKALCKH_01583	2.3e-187	fni	1.1.1.88, 5.3.3.2		C	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
PAKALCKH_01584	3.9e-179	mvaK2	2.7.1.36, 2.7.1.43, 2.7.4.2		I	phosphomevalonate kinase
PAKALCKH_01585	5.1e-173	mvaD	4.1.1.33		I	diphosphomevalonate decarboxylase
PAKALCKH_01586	4.2e-153	mvk	1.1.1.88, 2.3.3.10, 2.7.1.36		I	mevalonate kinase
PAKALCKH_01587	1.3e-246	merA	1.16.1.1		C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PAKALCKH_01588	1e-145				E	Alpha beta hydrolase
PAKALCKH_01590	3.4e-200	ald	1.4.1.1		C	Belongs to the AlaDH PNT family
PAKALCKH_01591	4e-220	hipO	3.5.1.47		E	COG1473 Metal-dependent amidase aminoacylase carboxypeptidase
PAKALCKH_01592	4e-139	rsuA	5.4.99.19, 5.4.99.22		J	Belongs to the pseudouridine synthase RsuA family
PAKALCKH_01593	3.9e-114				S	VIT family
PAKALCKH_01594	6.9e-197	yceA			S	Belongs to the UPF0176 family
PAKALCKH_01595	3.2e-122	nagB	3.1.1.31, 3.5.99.6		G	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
PAKALCKH_01596	4.6e-199	queA	2.4.99.17		J	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PAKALCKH_01597	0.0	lmrA			V	abc transporter atp-binding protein
PAKALCKH_01598	0.0	mdlB			V	abc transporter atp-binding protein
PAKALCKH_01599	2.5e-273	opuD			M	Belongs to the BCCT transporter (TC 2.A.15) family
PAKALCKH_01600	1.3e-102	abiGI			K	Transcriptional regulator, AbiEi antitoxin
PAKALCKH_01601	1e-29	XK27_00530			M	CHAP domain protein
PAKALCKH_01602	2.1e-21				S	Antitoxin component of a toxin-antitoxin (TA) module
PAKALCKH_01604	2.2e-131	agrA			KT	Response regulator of the LytR AlgR family
PAKALCKH_01605	5.3e-229		2.7.13.3		T	GHKL domain
PAKALCKH_01608	2.1e-45	rplL			J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
PAKALCKH_01609	9.6e-78	rplJ			J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PAKALCKH_01610	2.5e-209				V	permease protein
PAKALCKH_01611	4.4e-121	macB			V	ABC transporter, ATP-binding protein
PAKALCKH_01612	4.4e-180	acrA			M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PAKALCKH_01613	4.7e-129		2.1.1.223		S	Putative SAM-dependent methyltransferase
PAKALCKH_01614	0.0	carB	6.3.5.5		F	carbamoyl-phosphate synthetase ammonia chain
PAKALCKH_01615	2.1e-210	carA	6.3.5.5		F	carbamoyl-phosphate synthetase glutamine chain
PAKALCKH_01616	1.3e-173	pyrB	2.1.3.2		F	Belongs to the ATCase OTCase family
PAKALCKH_01617	4.7e-222	pyrP			F	uracil Permease
PAKALCKH_01618	4.8e-88	pyrR	2.4.2.9		F	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PAKALCKH_01619	1.1e-161	rluD	5.4.99.23		J	Responsible for synthesis of pseudouridine from uracil
PAKALCKH_01620	2.2e-76	lspA	3.4.23.36		MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PAKALCKH_01621	4.7e-168	fhuR			K	transcriptional regulator (lysR family)
PAKALCKH_01623	1.3e-43
PAKALCKH_01624	1.4e-67				K	Helix-turn-helix
PAKALCKH_01627	1.3e-139	ppiA	5.2.1.8		O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PAKALCKH_01628	0.0	pts33BCA	2.7.1.201, 2.7.1.208, 2.7.1.211		G	pts system
PAKALCKH_01629	2.9e-10	uvrX	2.7.7.7		L	impB/mucB/samB family
PAKALCKH_01630	8.7e-254	cycA			E	permease
PAKALCKH_01631	1.7e-38	ynzC			S	UPF0291 protein
PAKALCKH_01632	0.0	glyS	6.1.1.14		J	Glycyl-tRNA synthetase beta subunit
PAKALCKH_01633	3.7e-176	glyQ	6.1.1.14		J	glycyl-tRNA synthetase alpha subunit
PAKALCKH_01634	6.6e-221				S	membrane
PAKALCKH_01635	6.8e-220	nagA	3.5.1.25		G	Belongs to the metallo-dependent hydrolases superfamily. NagA family
PAKALCKH_01636	3.5e-294	nptA			P	COG1283 Na phosphate symporter
PAKALCKH_01637	6.1e-114		3.4.17.14, 3.5.1.28		NU	amidase activity
PAKALCKH_01638	7.6e-81				S	Bacterial inner membrane protein
PAKALCKH_01639	4.3e-144	XK27_04800			S	Sucrose-6F-phosphate phosphohydrolase
PAKALCKH_01640	4.6e-104	mur1	3.4.17.14, 3.5.1.28		NU	amidase activity
PAKALCKH_01641	1.1e-51	glnB			K	Belongs to the P(II) protein family
PAKALCKH_01642	1.8e-18	amt			P	Ammonium Transporter
PAKALCKH_01643	1.5e-195	amt			P	Ammonium Transporter
PAKALCKH_01644	1.7e-154	rsmI	2.1.1.198		H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PAKALCKH_01645	1.2e-54	yabA			L	Involved in initiation control of chromosome replication
PAKALCKH_01646	8.6e-137	yaaT			S	stage 0 sporulation protein
PAKALCKH_01647	2.7e-160	holB	2.7.7.7		L	dna polymerase iii
PAKALCKH_01648	5e-108	tmk	2.7.4.9		F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PAKALCKH_01650	0.0	tkt	2.2.1.1		G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PAKALCKH_01651	9.9e-135	tpiA	2.7.2.3, 5.3.1.1		G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PAKALCKH_01652	2.8e-224	tuf			J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PAKALCKH_01653	2.7e-217	ftsW			D	Belongs to the SEDS family
PAKALCKH_01654	2.6e-68	atpC			C	Produces ATP from ADP in the presence of a proton gradient across the membrane
PAKALCKH_01655	7.9e-263	atpD	3.6.3.14		C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PAKALCKH_01656	4.8e-157	atpG			C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PAKALCKH_01657	2.9e-279	atpA	3.6.3.14		C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PAKALCKH_01658	1e-85	atpH			C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAKALCKH_01659	1.6e-77	atpF			C	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PAKALCKH_01660	9e-122	atpB			C	it plays a direct role in the translocation of protons across the membrane
PAKALCKH_01661	2.4e-16	atpE			C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAKALCKH_01662	6.4e-261
PAKALCKH_01663	9.1e-215	dcm	2.1.1.37		H	C-5 cytosine-specific DNA methylase
PAKALCKH_01666	9.9e-41
PAKALCKH_01667	0.0	valS	6.1.1.9		J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
PAKALCKH_01668	0.0				L	Superfamily I DNA and RNA helicases and helicase subunits
PAKALCKH_01669	6.5e-99		2.3.1.128, 5.2.1.8		J	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
PAKALCKH_01670	4e-104				S	COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PAKALCKH_01671	3e-14	coiA	3.6.4.12		S	Competence protein
PAKALCKH_01672	5.2e-17				T	peptidase
PAKALCKH_01673	2.2e-149	rarD			S	Transporter
PAKALCKH_01674	7e-153	thrB	2.7.1.39		E	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
PAKALCKH_01675	1.7e-235	hom	1.1.1.3, 2.7.2.4		E	homoserine dehydrogenase
PAKALCKH_01676	1.7e-130	yxkH			G	deacetylase
PAKALCKH_01677	2.5e-203	argD	2.6.1.11, 2.6.1.17		E	acetylornithine aminotransferase
PAKALCKH_01678	7.6e-124	argB	2.7.2.8		E	Belongs to the acetylglutamate kinase family. ArgB subfamily
PAKALCKH_01679	5.6e-217	argJ	2.3.1.1, 2.3.1.35, 2.7.2.8		E	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PAKALCKH_01680	7e-184	argC	1.2.1.38		E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PAKALCKH_01681	2.4e-220	mtnE	2.6.1.83		E	mutations do not affect methionine salvage in vivo however
PAKALCKH_01682	2.2e-137	cnhA	3.5.1.3		S	Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase
PAKALCKH_01683	0.0	vanY	3.4.17.14, 3.5.1.28		M	D-alanyl-D-alanine carboxypeptidase
PAKALCKH_01685	1.4e-133	agrA			KT	response regulator
PAKALCKH_01686	0.0		3.4.17.14, 3.5.1.28		M	GBS Bsp-like repeat
PAKALCKH_01687	0.0	alaS	6.1.1.7		J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PAKALCKH_01688	7.1e-86	yxjI			S	LURP-one-related
PAKALCKH_01689	1.1e-166	prsA	3.1.3.16, 5.2.1.8		O	peptidyl-prolyl cis-trans isomerase activity
PAKALCKH_01690	6.1e-120	yrrM	2.1.1.104		S	O-Methyltransferase
PAKALCKH_01691	4.5e-214	oxlT			P	COG0477 Permeases of the major facilitator superfamily
PAKALCKH_01692	0.0	pepF			E	oligoendopeptidase F
PAKALCKH_01693	7e-170	coiA	3.6.4.12		S	Competence protein
PAKALCKH_01694	7.8e-277		2.7.13.3, 2.7.7.7, 5.4.99.21		D	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PAKALCKH_01695	4e-104				S	CAAX amino terminal protease family protein
PAKALCKH_01696	4.7e-168				K	transcriptional regulator (lysR family)
PAKALCKH_01697	4.4e-160				S	reductase
PAKALCKH_01698	0.0	metG	6.1.1.10, 6.1.1.20		J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAKALCKH_01699	6.5e-224				L	Transposase
PAKALCKH_01700	3.2e-89	adk	2.7.4.3		F	topology modulation protein
PAKALCKH_01701	4.1e-250	purA	6.3.4.4		F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PAKALCKH_01702	1.4e-80	ptpA	3.1.3.48		T	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PAKALCKH_01703	2.8e-35	XK27_09805			S	MORN repeat protein
PAKALCKH_01704	0.0	XK27_09800			I	Acyltransferase
PAKALCKH_01705	3e-187	ruvB	3.6.4.12		L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
PAKALCKH_01706	2.9e-48	rpsJ			J	Involved in the binding of tRNA to the ribosomes
PAKALCKH_01707	2.4e-110	rplC			J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PAKALCKH_01708	5.7e-104	rplD			J	Forms part of the polypeptide exit tunnel
PAKALCKH_01709	2.4e-44	rplW			J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
PAKALCKH_01710	6.8e-153	rplB			J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PAKALCKH_01711	8.3e-47	rpsS			J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PAKALCKH_01712	7.3e-53	rplV			J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PAKALCKH_01713	1.6e-117	rpsC			J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PAKALCKH_01714	1.1e-71	rplP			J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PAKALCKH_01715	3.5e-26	rpmC			J	Belongs to the universal ribosomal protein uL29 family
PAKALCKH_01716	6e-39	rpsQ			J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PAKALCKH_01717	3.9e-60	rplN			J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PAKALCKH_01718	1.4e-47	rplX			J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PAKALCKH_01719	1.6e-94	rplE			J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PAKALCKH_01720	1.5e-28	rpsN			J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PAKALCKH_01721	1.2e-67	rpsH			J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PAKALCKH_01722	6.6e-93	rplF			J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PAKALCKH_01723	1.9e-56	rplR			J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PAKALCKH_01724	1.3e-79	rpsE			J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PAKALCKH_01725	1.9e-23	rpmD			J	ribosomal protein l30
PAKALCKH_01726	5.7e-58	rplO			J	binds to the 23S rRNA
PAKALCKH_01727	3e-232	secY			U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
PAKALCKH_01728	2.5e-115	adk	2.7.4.3		F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
PAKALCKH_01729	2.7e-32	infA			J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PAKALCKH_01730	6e-15	rpmJ			J	Belongs to the bacterial ribosomal protein bL36 family
PAKALCKH_01731	4e-57	rpsM			J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PAKALCKH_01732	1.9e-62	rpsK			J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PAKALCKH_01733	3.6e-171	rpoA	2.7.7.6		K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAKALCKH_01734	4.4e-62	rplQ			J	ribosomal protein l17
PAKALCKH_01735	3.9e-240		6.3.2.2		H	gamma-glutamylcysteine synthetase
PAKALCKH_01737	1.3e-165	fba	4.1.2.13, 4.1.2.29		G	aldolase
PAKALCKH_01738	1.2e-183				L	Phage integrase family
PAKALCKH_01739	4e-16
PAKALCKH_01740	1.3e-170	isp2			S	pathogenesis
PAKALCKH_01741	9.7e-30
PAKALCKH_01742	3.7e-255
PAKALCKH_01743	0.0	yddE			S	AAA-like domain
PAKALCKH_01744	5.1e-69				S	TcpE family
PAKALCKH_01745	3.2e-33
PAKALCKH_01746	1.1e-160				S	Conjugative transposon protein TcpC
PAKALCKH_01747	4.8e-86
PAKALCKH_01748	4.3e-33
PAKALCKH_01749	4.4e-225				K	Replication initiation factor
PAKALCKH_01750	2.7e-208				L	Belongs to the 'phage' integrase family
PAKALCKH_01751	2.7e-10				S	Domain of unknown function (DUF3173)
PAKALCKH_01752	3.1e-88				L	Replication initiation factor
PAKALCKH_01753	5.4e-12				K	Transcriptional
PAKALCKH_01754	8.6e-67
PAKALCKH_01755	2.8e-89				D	nuclear chromosome segregation
PAKALCKH_01756	4.3e-41				K	DNA-templated transcription, initiation
PAKALCKH_01757	6.1e-123	mutF			V	ABC transporter, ATP-binding protein
PAKALCKH_01758	2.2e-123	mutE			S	ABC transporter
PAKALCKH_01759	4.1e-125	mutG			S	Lantibiotic protection ABC transporter permease subunit, MutG family
PAKALCKH_01760	6.6e-119				KT	Transcriptional regulatory protein, C terminal
PAKALCKH_01761	2.2e-241				T	PhoQ Sensor
PAKALCKH_01762	1.7e-275	ydcQ			D	Ftsk spoiiie family protein
PAKALCKH_01763	5e-73
PAKALCKH_01764	3.5e-43
PAKALCKH_01765	2.9e-46				K	Bacteriophage CI repressor helix-turn-helix domain
PAKALCKH_01767	1.9e-134				E	IrrE N-terminal-like domain
PAKALCKH_01768	2.9e-109				K	Peptidase S24-like
PAKALCKH_01769	1.5e-144	rkpG	2.3.1.47		E	Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide
PAKALCKH_01770	1.1e-60		2.1.1.72		J	protein-(glutamine-N5) methyltransferase activity
PAKALCKH_01771	1.4e-55				V	abc transporter atp-binding protein
PAKALCKH_01772	1.2e-108				V	Efflux ABC transporter permease protein
PAKALCKH_01773	2.7e-102		2.3.1.179		I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
PAKALCKH_01775	1.6e-97				CG	glycosyl
PAKALCKH_01776	4.2e-87				S	Domain of unknown function (DUF4336)
PAKALCKH_01777	2.3e-70
PAKALCKH_01779	5.1e-96	ywlG			S	Belongs to the UPF0340 family
PAKALCKH_01780	4.2e-258	treC	3.2.1.93	GH13	G	COG0366 Glycosidases
PAKALCKH_01781	0.0	pepO	3.4.24.71		O	Peptidase family M13
PAKALCKH_01782	0.0	adhE	1.1.1.1, 1.2.1.10		C	belongs to the iron- containing alcohol dehydrogenase family
PAKALCKH_01785	9.2e-278	thrC	4.2.3.1		E	Threonine synthase
PAKALCKH_01786	1.6e-225	norN			V	Mate efflux family protein
PAKALCKH_01787	1.4e-57	asp			S	cog cog1302
PAKALCKH_01788	1.2e-302	yloV			S	kinase related to dihydroxyacetone kinase
PAKALCKH_01789	0.0	ilvD	4.2.1.9		E	Belongs to the IlvD Edd family
PAKALCKH_01790	0.0	ilvB	2.2.1.6		EH	Acetolactate synthase
PAKALCKH_01791	2.2e-76	ilvN	2.2.1.6		E	Acetolactate synthase
PAKALCKH_01792	3e-195	ilvC	1.1.1.86		H	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PAKALCKH_01793	1.6e-238	tyrS	6.1.1.1		J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PAKALCKH_01794	0.0	pbp1B	2.4.1.129, 3.4.16.4	GT51	M	penicillin-binding protein
PAKALCKH_01795	0.0	rpoB	2.7.7.6		K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAKALCKH_01796	0.0	rpoC	2.7.7.6		K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAKALCKH_01797	5e-68				S	cog cog4699
PAKALCKH_01798	2.4e-281	mapZ			D	Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning
PAKALCKH_01799	1.8e-223	rlmL	2.1.1.173, 2.1.1.264		L	Belongs to the methyltransferase superfamily
PAKALCKH_01800	5.6e-50	gpsB			D	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
PAKALCKH_01801	4e-95	ypsA			S	Belongs to the UPF0398 family
PAKALCKH_01802	9.6e-109	recU			L	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
PAKALCKH_01803	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	penicillin-binding protein
PAKALCKH_01804	5.8e-255	pepC	3.4.22.40		E	aminopeptidase
PAKALCKH_01805	1.7e-70	yhaI			S	Protein of unknown function (DUF805)
PAKALCKH_01806	3.4e-149	nadE	6.3.1.5		H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
PAKALCKH_01807	1.1e-272	pncB	6.3.4.21		H	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PAKALCKH_01808	7.9e-217	macB_2			V	FtsX-like permease family
PAKALCKH_01809	8.7e-122	yhcA			V	abc transporter atp-binding protein
PAKALCKH_01810	4.8e-123	mta			K	Transcriptional
PAKALCKH_01811	4.4e-31				S	Protein of unknown function (DUF3021)
PAKALCKH_01812	9e-75				K	COG3279 Response regulator of the LytR AlgR family
PAKALCKH_01813	5.6e-131	cylB			V	ABC-2 type transporter
PAKALCKH_01814	1.9e-150	cylA			V	abc transporter atp-binding protein
PAKALCKH_01815	3e-37	yjdF			S	Protein of unknown function (DUF2992)
PAKALCKH_01816	0.0	leuS	6.1.1.4		J	Belongs to the class-I aminoacyl-tRNA synthetase family
PAKALCKH_01817	6.9e-136	glcR			K	transcriptional regulator (DeoR family)
PAKALCKH_01818	4e-142	cof			S	Sucrose-6F-phosphate phosphohydrolase
PAKALCKH_01819	1e-63		3.1.3.27, 3.1.3.4, 3.1.3.81, 3.6.1.27		I	phosphatidate phosphatase activity
PAKALCKH_01820	8.4e-96	nusG			K	Participates in transcription elongation, termination and antitermination
PAKALCKH_01821	2.8e-24	secE			U	Belongs to the SecE SEC61-gamma family
PAKALCKH_01822	1.4e-19	rpmG			J	Belongs to the bacterial ribosomal protein bL33 family
PAKALCKH_01823	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	penicillin-binding protein
PAKALCKH_01824	6.2e-165	rluA	5.4.99.23		J	Responsible for synthesis of pseudouridine from uracil
PAKALCKH_01825	5.8e-55				S	TM2 domain
PAKALCKH_01826	5.5e-44
PAKALCKH_01828	8.2e-288	groL			O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
PAKALCKH_01829	2.7e-40	groS			O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PAKALCKH_01830	1.4e-142	cmpC			S	abc transporter atp-binding protein
PAKALCKH_01831	0.0	WQ51_06230			S	ABC transporter substrate binding protein
PAKALCKH_01832	0.0	proS	6.1.1.15		J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
PAKALCKH_01833	2.1e-230	rseP	3.4.21.107, 3.4.21.116		M	zinc metalloprotease
PAKALCKH_01834	9.3e-144	cdsA	2.7.7.41		S	Belongs to the CDS family
PAKALCKH_01835	5.3e-141	uppS	2.5.1.31		H	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PAKALCKH_01836	5.9e-47	yajC			U	protein transport
PAKALCKH_01837	6.1e-126	yeeN			K	transcriptional regulatory protein
PAKALCKH_01838	8.3e-277				V	ABC transporter
PAKALCKH_01839	3e-151	Z012_04635			K	sequence-specific DNA binding
PAKALCKH_01840	4.8e-257	pgi	5.3.1.9		G	Belongs to the GPI family
PAKALCKH_01841	3.1e-158	rgfB	3.1.3.90		L	Endonuclease/Exonuclease/phosphatase family
PAKALCKH_01842	0.0	ptsG	2.7.1.199, 2.7.1.201, 2.7.1.208, 2.7.1.211		G	pts system
PAKALCKH_01843	8.1e-163	mleP2			S	Transporter, auxin efflux carrier (AEC) family protein
PAKALCKH_01844	4.3e-128	adcB			P	ABC transporter (Permease
PAKALCKH_01845	9.2e-135	adcC			P	ABC transporter, ATP-binding protein
PAKALCKH_01846	5.9e-71	adcR			K	transcriptional
PAKALCKH_01847	2.8e-182	dus			J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PAKALCKH_01848	4.3e-158	hslO			O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PAKALCKH_01849	4.7e-26
PAKALCKH_01850	2.9e-273	sufB			O	assembly protein SufB
PAKALCKH_01851	9.4e-74	nifU			C	SUF system FeS assembly protein, NifU family
PAKALCKH_01852	1.1e-236	sufS	2.8.1.7, 4.4.1.16		E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PAKALCKH_01853	2e-233	sufD			O	assembly protein SufD
PAKALCKH_01854	1.7e-137	sufC			O	ABC-type transport system involved in Fe-S cluster assembly, ATPase component
PAKALCKH_01855	8.7e-183	tagO	2.7.8.33, 2.7.8.35		M	transferase
PAKALCKH_01856	1.6e-124	mecA			NOT	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
PAKALCKH_01857	2.4e-17				S	Protein of unknown function (DUF3021)
PAKALCKH_01858	1.5e-152	uppP	3.6.1.27		V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
PAKALCKH_01859	1.3e-271	glnP			P	ABC transporter
PAKALCKH_01860	2.2e-123	glnQ			E	abc transporter atp-binding protein
PAKALCKH_01861	2.3e-183				D	nuclear chromosome segregation
PAKALCKH_01862	7.1e-72				V	VanZ like family
PAKALCKH_01863	9.2e-43	rpsO			J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PAKALCKH_01864	5.6e-190	yhjX			P	Major Facilitator
PAKALCKH_01865	3.4e-112	fnr5			K	Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
PAKALCKH_01866	3.3e-112	def	3.5.1.31, 3.5.1.88		J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
PAKALCKH_01867	8.7e-237	ilvA	4.3.1.19		E	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PAKALCKH_01868	0.0	dex	3.2.1.11	GH66	G	Glycosyl hydrolase family 66
PAKALCKH_01869	9.7e-74	dtd			J	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
PAKALCKH_01870	0.0	relA	2.7.6.5		KT	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PAKALCKH_01871	9.1e-83	nrdI			F	Belongs to the NrdI family
PAKALCKH_01872	0.0	cpdB	3.1.3.6, 3.1.4.16		F	Belongs to the 5'-nucleotidase family
PAKALCKH_01873	2.4e-133	rsmE	2.1.1.193		J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
PAKALCKH_01874	2.2e-176	prmA			J	Ribosomal protein L11 methyltransferase
PAKALCKH_01875	4.9e-76	mutT3	3.6.1.13, 3.6.1.55		L	NUDIX domain
PAKALCKH_01876	1.6e-82	XK27_03960			S	Protein of unknown function (DUF3013)
PAKALCKH_01877	1.1e-308	pyrG	6.3.4.2		F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
PAKALCKH_01878	1.3e-70	rpoE			K	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
PAKALCKH_01879	5.2e-229	tig			D	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
PAKALCKH_01880	2.6e-138	ykuT			M	mechanosensitive ion channel
PAKALCKH_01881	3.9e-87	sigH			K	DNA-templated transcription, initiation
PAKALCKH_01883	0.0		3.2.1.26, 3.2.1.65	GH32	G	Belongs to the glycosyl hydrolase 32 family
PAKALCKH_01884	2.3e-223	malY	4.4.1.8		E	COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
PAKALCKH_01885	1.7e-199	metB	2.5.1.48, 4.4.1.8		E	cystathionine
PAKALCKH_01886	0.0	pacL	3.6.3.8, 3.6.3.9		P	cation transport ATPase
PAKALCKH_01887	3.8e-282	ytgP			S	Membrane protein involved in the export of O-antigen and teichoic acid
PAKALCKH_01888	3.1e-270	murE	6.3.2.13, 6.3.2.7		M	to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PAKALCKH_01889	1.5e-188	femA	2.3.2.16, 2.3.2.17, 2.3.2.18		V	protein involved in methicillin resistance
PAKALCKH_01890	2.2e-99	yvdD	3.2.2.10		S	Belongs to the LOG family
PAKALCKH_01891	8.6e-57	rbfA			J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PAKALCKH_01892	0.0	infB			J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PAKALCKH_01893	1.4e-41	ylxQ			J	ribosomal protein
PAKALCKH_01894	2.3e-47	ylxR			K	Nucleic-acid-binding protein implicated in transcription termination
PAKALCKH_01895	4e-199	nusA			K	Participates in both transcription termination and antitermination
PAKALCKH_01896	2.3e-81	rimP			S	Required for maturation of 30S ribosomal subunits
PAKALCKH_01897	9.8e-188	brpA			K	Transcriptional
PAKALCKH_01898	1.8e-90	XK27_05885	2.3.1.82		M	phosphinothricin N-acetyltransferase activity
PAKALCKH_01899	1.2e-76	ydiB	2.7.1.221, 5.1.1.1		M	ATPase or kinase
PAKALCKH_01900	6.2e-247	pbuO			S	permease
PAKALCKH_01901	3.5e-154	yitU	3.1.3.104		S	hydrolases of the HAD superfamily
PAKALCKH_01902	9.3e-138	XK27_00940	1.2.1.70, 3.5.1.9		S	Metal-dependent hydrolase
PAKALCKH_01903	8.1e-169	manL	2.7.1.191		G	pts system
PAKALCKH_01904	4.7e-135	manY			G	pts system
PAKALCKH_01905	2.7e-163	manN			G	PTS system mannose fructose sorbose family IID component
PAKALCKH_01906	2e-67	manO			S	Protein conserved in bacteria
PAKALCKH_01907	4.9e-174	manL	2.7.1.191		G	pts system
PAKALCKH_01908	2e-117	manM			G	pts system
PAKALCKH_01909	3.3e-169	manN			G	PTS system mannose fructose sorbose family IID component
PAKALCKH_01910	2.5e-62	manO			S	protein conserved in bacteria
PAKALCKH_01911	6.2e-230	serS	6.1.1.11		J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PAKALCKH_01912	1.5e-112
PAKALCKH_01913	2.6e-247	der	1.1.1.399, 1.1.1.95		S	GTPase that plays an essential role in the late steps of ribosome biogenesis
PAKALCKH_01914	4.4e-166	dnaI			L	Primosomal protein DnaI
PAKALCKH_01915	1.7e-213	dnaB			L	Replication initiation and membrane attachment
PAKALCKH_01916	3e-81	nrdR			K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PAKALCKH_01917	5.9e-280				T	PhoQ Sensor
PAKALCKH_01918	7.9e-123				T	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PAKALCKH_01919	6.2e-91	yceD			K	metal-binding, possibly nucleic acid-binding protein
PAKALCKH_01920	1.5e-129	rsmG	2.1.1.170		J	Ribosomal RNA small subunit methyltransferase G
PAKALCKH_01921	4.7e-236				P	COG0168 Trk-type K transport systems, membrane components
PAKALCKH_01922	1.8e-119	ktrA			P	COG0569 K transport systems, NAD-binding component
PAKALCKH_01923	4.5e-149	cbiQ			P	cobalt transport
PAKALCKH_01924	3.5e-310	ykoD			P	abc transporter atp-binding protein
PAKALCKH_01925	3e-93				S	UPF0397 protein
PAKALCKH_01926	4.6e-157	salL	2.5.1.63, 2.5.1.94		S	S-adenosyl-l-methionine hydroxide adenosyltransferase
PAKALCKH_01927	1.9e-209	sstT			E	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
PAKALCKH_01928	1.2e-99	metI			P	ABC transporter (Permease
PAKALCKH_01929	6.4e-188	metN			P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PAKALCKH_01930	2e-263	dapE	3.5.1.18		E	COG0624, acetylornithine deacetylase succinyl-diaminopimelate desuccinylase and related deacylases
PAKALCKH_01931	9.2e-164	metQ			M	Belongs to the NlpA lipoprotein family
PAKALCKH_01932	1.4e-137				ET	ABC transporter substrate-binding protein
PAKALCKH_01933	6.3e-131	cbiO			P	ABC transporter
PAKALCKH_01934	3.2e-136				P	cobalt transport protein
PAKALCKH_01935	1.3e-176	cbiM			P	biosynthesis protein CbiM
PAKALCKH_01936	3.4e-160	ureD			O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PAKALCKH_01937	9.5e-112	ureG			KO	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PAKALCKH_01938	1.7e-128	ureF			O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PAKALCKH_01939	6.6e-78	ureE			O	enzyme active site formation
PAKALCKH_01940	0.0	ureC	3.5.1.5		E	Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family
PAKALCKH_01941	7.8e-54	ureB	3.5.1.5		E	Belongs to the urease beta subunit family
PAKALCKH_01942	7.6e-46	ureA	3.5.1.5		E	Belongs to the urease gamma subunit family
PAKALCKH_01943	6.8e-95	ureI			S	AmiS/UreI family transporter
PAKALCKH_01944	1.3e-244				S	Domain of unknown function (DUF4173)
PAKALCKH_01945	2.9e-54	yhaI			L	Membrane
PAKALCKH_01946	0.0	comA			V	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PAKALCKH_01947	5.1e-154				K	sequence-specific DNA binding
PAKALCKH_01948	4.7e-101	bcrC	3.6.1.27		I	Membrane-associated phospholipid phosphatase
PAKALCKH_01949	2.1e-89	ribU			U	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
PAKALCKH_01950	2.4e-92	trmL	2.1.1.207		J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
PAKALCKH_01951	2.2e-246	trkA			P	Potassium transporter peripheral membrane component
PAKALCKH_01952	4.2e-259	trkH			P	Cation transport protein
PAKALCKH_01953	1.4e-13	yidD			M	Could be involved in insertion of integral membrane proteins into the membrane
PAKALCKH_01954	3.4e-132	rluB	5.4.99.19, 5.4.99.21, 5.4.99.22		J	Belongs to the pseudouridine synthase RsuA family
PAKALCKH_01955	2e-95	scpB			D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PAKALCKH_01956	3.4e-121	scpA			D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PAKALCKH_01957	5.4e-128	xerD			L	tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site
PAKALCKH_01958	3.5e-85	ykuL			S	CBS domain
PAKALCKH_01959	3.3e-97	XK27_09740			S	Phosphoesterase
PAKALCKH_01960	1.5e-183	rdgB	3.6.1.66, 5.1.1.3		F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PAKALCKH_01961	3.4e-149	murI	5.1.1.3		M	Provides the (R)-glutamate required for cell wall biosynthesis
PAKALCKH_01962	1.6e-36	yneF			S	UPF0154 protein
PAKALCKH_01963	1.8e-90				K	transcriptional regulator
PAKALCKH_01964	3.1e-242	lysA	4.1.1.20		E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
PAKALCKH_01965	5.5e-12	ycdA			S	Domain of unknown function (DUF4352)
PAKALCKH_01966	2.2e-101	ybhL			S	Belongs to the BI1 family
PAKALCKH_01967	7.3e-94	XK27_09705	6.1.1.14		S	HD superfamily hydrolase
PAKALCKH_01968	1.5e-127	spoU	2.1.1.185		J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAKALCKH_01969	6e-45	acyP	3.6.1.7		C	Belongs to the acylphosphatase family
PAKALCKH_01970	1.7e-165	yidC			U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAKALCKH_01977	6.6e-165	ppaC	3.6.1.1		C	inorganic pyrophosphatase
PAKALCKH_01978	1.6e-103				S	Domain of unknown function (DUF1803)
PAKALCKH_01979	7.8e-102	ygaC			J	Belongs to the UPF0374 family
PAKALCKH_01980	8.3e-137	recX	2.4.1.337	GT4	S	Regulatory protein RecX
PAKALCKH_01981	3.8e-246	rumA	2.1.1.190, 2.1.1.35		J	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAKALCKH_01982	3e-192	asnA	6.3.1.1		E	aspartate--ammonia ligase
PAKALCKH_01983	6.9e-256	lysC	2.7.2.4		E	Belongs to the aspartokinase family
PAKALCKH_01984	2.1e-114				S	HAD hydrolase, family IA, variant 3
PAKALCKH_01985	4.8e-140	phaB	5.3.3.14, 5.3.3.18		I	Belongs to the enoyl-CoA hydratase isomerase family
PAKALCKH_01986	5.2e-72	marR			K	Transcriptional regulator, MarR family
PAKALCKH_01987	1.4e-170	fabH	2.3.1.180		I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PAKALCKH_01988	3.3e-30	acpP			IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAKALCKH_01989	4.4e-172	fabK	1.3.1.9		S	2-Nitropropane dioxygenase
PAKALCKH_01990	3.6e-163	fabD	2.3.1.39		I	Malonyl CoA-acyl carrier protein transacylase
PAKALCKH_01991	6.2e-126				IQ	reductase
PAKALCKH_01992	2.6e-233	fabF	2.3.1.179		I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
PAKALCKH_01993	5.2e-52	accB	2.3.1.12, 4.1.1.3		I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
PAKALCKH_01994	1.5e-71	fabZ	3.5.1.108, 4.2.1.59		I	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PAKALCKH_01995	8.3e-257	accC	6.3.4.14, 6.4.1.2		I	An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
PAKALCKH_01996	5e-159	accD	2.1.3.15, 6.4.1.2		I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PAKALCKH_01997	5.1e-139	accA	2.1.3.15, 6.4.1.2		I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
PAKALCKH_01998	2.7e-264				L	Transposase
PAKALCKH_01999	4.7e-90	luxS	4.4.1.21		H	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
PAKALCKH_02000	7.1e-207	rny			D	Endoribonuclease that initiates mRNA decay
PAKALCKH_02001	1.4e-112	fruR			K	transcriptional
PAKALCKH_02002	7.6e-166	pfkB	2.7.1.11, 2.7.1.56		H	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PAKALCKH_02003	0.0	fruA	2.7.1.202		G	phosphotransferase system
PAKALCKH_02004	7.9e-260	gor	1.8.1.7		C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PAKALCKH_02005	2.1e-230	folC	6.3.2.12, 6.3.2.17		H	Belongs to the folylpolyglutamate synthase family
PAKALCKH_02007	4e-212	iscS2	2.8.1.7		E	Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes
PAKALCKH_02008	1.1e-223	thiI	2.8.1.4		H	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAKALCKH_02009	4.2e-294	gtf1	2.4.1.52	GT4	M	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PAKALCKH_02010	2e-255	gtf2			M	A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PAKALCKH_02011	2.4e-82		2.3.1.128		K	acetyltransferase
PAKALCKH_02012	4.5e-49	rplU			J	This protein binds to 23S rRNA in the presence of protein L20
PAKALCKH_02013	1.5e-46	rpmA			J	Belongs to the bacterial ribosomal protein bL27 family
PAKALCKH_02014	4.2e-132	ydaF_2			J	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PAKALCKH_02015	5e-63	WQ51_03320			S	cog cog4835
PAKALCKH_02016	6.8e-125	XK27_08360			S	EDD domain protein, DegV family
PAKALCKH_02017	1.5e-138	dapB	1.17.1.8		E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
PAKALCKH_02018	1.6e-219	cca	2.7.7.19, 2.7.7.72		J	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
PAKALCKH_02019	0.0	yfmR			S	abc transporter atp-binding protein
PAKALCKH_02020	1.3e-26				U	response to pH
PAKALCKH_02021	5.3e-128		3.6.1.13, 3.6.1.55		F	AdP-ribose pyrophosphatase
PAKALCKH_02022	6.1e-210	nadD	2.7.1.22, 2.7.7.1, 2.7.7.18, 3.6.1.55		H	adenylyltransferase
PAKALCKH_02023	2.6e-255	gdhA	1.4.1.4		E	Belongs to the Glu Leu Phe Val dehydrogenases family
PAKALCKH_02024	5.8e-273				S	Psort location CytoplasmicMembrane, score
PAKALCKH_02025	7.9e-70	def_1	3.5.1.31, 3.5.1.88		J	Removes the formyl group from the N-terminal Met of newly synthesized proteins
PAKALCKH_02026	2.6e-74				K	DNA-binding transcription factor activity
PAKALCKH_02027	3.6e-308	lmrA1			V	abc transporter atp-binding protein
PAKALCKH_02028	0.0	lmrA2			V	abc transporter atp-binding protein
PAKALCKH_02029	1.8e-110				K	Acetyltransferase (GNAT) family
PAKALCKH_02030	3.3e-112		2.7.6.5		S	Region found in RelA / SpoT proteins
PAKALCKH_02031	1.6e-115				T	response regulator
PAKALCKH_02032	5.6e-204	sptS	2.7.13.3		T	Histidine kinase
PAKALCKH_02033	1.7e-131	pyrH	2.7.4.22		F	Catalyzes the reversible phosphorylation of UMP to UDP
PAKALCKH_02034	6.4e-91	frr			J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
PAKALCKH_02035	4.5e-160	cvfB			S	Protein conserved in bacteria
PAKALCKH_02036	3.7e-34	yozE			S	Belongs to the UPF0346 family
PAKALCKH_02037	1.3e-123	sip			M	LysM domain protein
PAKALCKH_02038	5.2e-190	phoH			T	phosphate starvation-inducible protein PhoH