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ORF_ID	e_value	Gene_name	EC_number	COGs	Description
IPFAEKAL_00001	3e-223	tnpB		L	Putative transposase DNA-binding domain
IPFAEKAL_00002	0.0	dnaX	2.7.7.7	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
IPFAEKAL_00003	6.9e-92	tadA	3.5.4.33	F	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
IPFAEKAL_00004	1.4e-23
IPFAEKAL_00005	6.4e-116	rsmC	2.1.1.172	J	Methyltransferase
IPFAEKAL_00006	1.5e-123	potC	2.1.1.172, 2.1.1.80, 3.1.1.61	J	Ion channel
IPFAEKAL_00007	2.2e-47	rplL		J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
IPFAEKAL_00008	1.6e-83	rplJ		J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
IPFAEKAL_00009	2.2e-10
IPFAEKAL_00010	2.2e-210	yfdV		S	Membrane transport protein
IPFAEKAL_00011	2e-118	phoU		P	Plays a role in the regulation of phosphate uptake
IPFAEKAL_00012	7e-141	pstB	3.6.3.27	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
IPFAEKAL_00013	4.2e-144	pstB	3.6.3.27	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
IPFAEKAL_00014	2.6e-155	pstA		P	Phosphate transport system permease protein PstA
IPFAEKAL_00015	5.2e-176	pstC		P	probably responsible for the translocation of the substrate across the membrane
IPFAEKAL_00016	1.5e-158	pstS		P	Phosphate
IPFAEKAL_00017	4.2e-124	rplA		J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
IPFAEKAL_00018	6.9e-69	rplK		J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
IPFAEKAL_00019	6.2e-102	nusG		K	Participates in transcription elongation, termination and antitermination
IPFAEKAL_00020	7.8e-24	secE		U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
IPFAEKAL_00021	0.0	dxs	2.2.1.7	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
IPFAEKAL_00022	8.1e-173			K	helix_turn_helix, arabinose operon control protein
IPFAEKAL_00023	3.7e-287	gntK	2.7.1.12, 2.7.1.17	G	Belongs to the FGGY kinase family
IPFAEKAL_00024	3.5e-114
IPFAEKAL_00025	2.2e-34
IPFAEKAL_00026	3.5e-94	sigH		K	Belongs to the sigma-70 factor family
IPFAEKAL_00027	1.6e-140	rlmB	2.1.1.185	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
IPFAEKAL_00028	2.3e-75	mrnC		J	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
IPFAEKAL_00029	6.8e-278	cysS	6.1.1.16, 6.3.1.13	J	Belongs to the class-I aminoacyl-tRNA synthetase family
IPFAEKAL_00030	9.3e-278	gltX	6.1.1.17, 6.1.1.24	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
IPFAEKAL_00031	9.2e-256	radA		O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
IPFAEKAL_00032	9.5e-103	dut	3.6.1.23, 4.1.1.36, 6.3.2.5	F	dUTP diphosphatase
IPFAEKAL_00033	7e-52
IPFAEKAL_00034	1.9e-266	pepC	3.4.22.40	E	Peptidase C1-like family
IPFAEKAL_00035	6.4e-184			S	AAA domain
IPFAEKAL_00036	2.4e-80	gpmA	5.4.2.11	G	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
IPFAEKAL_00037	2.2e-19
IPFAEKAL_00038	2.1e-163	czcD		P	cation diffusion facilitator family transporter
IPFAEKAL_00039	4.7e-128	pgm3	5.4.2.11	G	Belongs to the phosphoglycerate mutase family
IPFAEKAL_00040	5.8e-111			S	membrane transporter protein
IPFAEKAL_00041	2.5e-118		3.1.3.102, 3.1.3.104, 3.8.1.2	S	Haloacid dehalogenase-like hydrolase
IPFAEKAL_00042	2.5e-109	thiJ	2.7.11.1, 3.5.1.124	S	DJ-1/PfpI family
IPFAEKAL_00043	2.8e-11
IPFAEKAL_00044	1.7e-13
IPFAEKAL_00045	6.9e-65			S	YjcQ protein
IPFAEKAL_00046	0.0			V	Type II restriction enzyme, methylase subunits
IPFAEKAL_00048	1.1e-52
IPFAEKAL_00049	3.1e-206			D	COG1674 DNA segregation ATPase FtsK SpoIIIE and related proteins
IPFAEKAL_00050	6.6e-45
IPFAEKAL_00051	5.5e-211	repB		EP	Plasmid replication protein
IPFAEKAL_00052	6.5e-27
IPFAEKAL_00053	1e-198			L	Phage integrase family
IPFAEKAL_00054	3.5e-67	rpsI		J	Belongs to the universal ribosomal protein uS9 family
IPFAEKAL_00055	5.9e-79	rplM		J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
IPFAEKAL_00056	3e-150	truA	5.4.99.12	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
IPFAEKAL_00057	9.7e-141	ecfT		U	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
IPFAEKAL_00058	2.4e-161	ecfA	3.6.3.55	P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
IPFAEKAL_00059	2.8e-154	ecfA1		P	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
IPFAEKAL_00060	8.2e-61	rplQ		J	Ribosomal protein L17
IPFAEKAL_00061	8.1e-171	rpoA	2.7.7.6	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
IPFAEKAL_00062	4e-63	rpsK		J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
IPFAEKAL_00063	4.2e-56	rpsM		J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
IPFAEKAL_00064	2.7e-15	rpmJ		J	Belongs to the bacterial ribosomal protein bL36 family
IPFAEKAL_00065	8.4e-34	infA		J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
IPFAEKAL_00066	2e-120	adk	2.7.4.3	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
IPFAEKAL_00067	4e-237	secY		U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
IPFAEKAL_00068	2e-71	rplO		J	Binds to the 23S rRNA
IPFAEKAL_00069	2.3e-24	rpmD		J	Ribosomal protein L30
IPFAEKAL_00070	3.1e-84	rpsE		J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
IPFAEKAL_00071	2.1e-55	rplR		J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
IPFAEKAL_00072	2.5e-92	rplF		J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
IPFAEKAL_00073	9.3e-68	rpsH		J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
IPFAEKAL_00074	8.9e-29	rpsN		J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
IPFAEKAL_00075	7.2e-95	rplE		J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
IPFAEKAL_00076	4.4e-33	rplX		J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
IPFAEKAL_00077	1.1e-59	rplN		J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
IPFAEKAL_00078	3.8e-41	rpsQ		J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
IPFAEKAL_00079	1.3e-25	rpmC		J	Belongs to the universal ribosomal protein uL29 family
IPFAEKAL_00080	6e-76	rplP		J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
IPFAEKAL_00081	4.9e-109	rpsC		J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
IPFAEKAL_00082	3.1e-54	rplV		J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
IPFAEKAL_00083	9.4e-46	rpsS		J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
IPFAEKAL_00084	4.3e-155	rplB		J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
IPFAEKAL_00085	1.2e-46	rplW		J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
IPFAEKAL_00086	4.6e-106	rplD		J	Forms part of the polypeptide exit tunnel
IPFAEKAL_00087	6.9e-113	rplC		J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
IPFAEKAL_00088	4.4e-49	rpsJ		J	Involved in the binding of tRNA to the ribosomes
IPFAEKAL_00089	0.0	fusA		J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
IPFAEKAL_00090	2.7e-82	rpsG		J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
IPFAEKAL_00091	1.3e-69	rpsL		J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
IPFAEKAL_00092	7.9e-123	pilD	3.4.23.43	NOU	Bacterial Peptidase A24 N-terminal domain
IPFAEKAL_00093	0.0	rpoC	2.7.7.6	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
IPFAEKAL_00094	0.0	rpoB	2.7.7.6	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
IPFAEKAL_00095	0.0	clpC		O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
IPFAEKAL_00096	4.9e-81	yebR	1.8.4.14	T	GAF domain-containing protein
IPFAEKAL_00098	7.8e-08
IPFAEKAL_00099	7.8e-08
IPFAEKAL_00100	1.5e-302	lysS	6.1.1.6	J	Belongs to the class-II aminoacyl-tRNA synthetase family
IPFAEKAL_00101	1.4e-195	dus		J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
IPFAEKAL_00102	2.6e-166	hslO		O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress

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