ORF_ID e_value Gene_name EC_number CAZy COGs Description
NDENIPDB_00001 0.0 3.2.1.21 GH3 G Fibronectin type III-like domain
NDENIPDB_00002 0.0 KLT Protein tyrosine kinase
NDENIPDB_00003 7.5e-151 O Thioredoxin
NDENIPDB_00005 3.4e-179 S G5
NDENIPDB_00006 2e-166 ksgA 2.1.1.182, 2.1.1.184 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
NDENIPDB_00007 9.6e-169 ispE 2.1.1.182, 2.7.1.148 F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
NDENIPDB_00008 2.6e-109 S LytR cell envelope-related transcriptional attenuator
NDENIPDB_00009 1.7e-284 cca 2.7.7.19, 2.7.7.72 J Probable RNA and SrmB- binding site of polymerase A
NDENIPDB_00010 6.3e-122 deoC 3.6.1.13, 3.6.1.17, 3.6.1.55, 3.6.1.61 L Belongs to the Nudix hydrolase family
NDENIPDB_00011 0.0 M Conserved repeat domain
NDENIPDB_00012 6e-305 murJ KLT MviN-like protein
NDENIPDB_00013 0.0 murJ KLT MviN-like protein
NDENIPDB_00014 8e-14 S Domain of unknown function (DUF4143)
NDENIPDB_00015 1.4e-121 yorS 3.1.3.5 S 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
NDENIPDB_00016 7e-14 S Psort location Extracellular, score 8.82
NDENIPDB_00017 3.1e-181 trxB 1.8.1.9, 4.3.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
NDENIPDB_00018 6.8e-203 parB K Belongs to the ParB family
NDENIPDB_00019 5.5e-170 parA D CobQ CobB MinD ParA nucleotide binding domain protein
NDENIPDB_00020 5.6e-128 rsmG 2.1.1.170 J Specifically methylates the N7 position of a guanine in 16S rRNA
NDENIPDB_00021 3.6e-91 jag S Putative single-stranded nucleic acids-binding domain
NDENIPDB_00022 7.3e-189 yidC U Membrane protein insertase, YidC Oxa1 family
NDENIPDB_00023 1.5e-19 rpmH J Belongs to the bacterial ribosomal protein bL34 family
NDENIPDB_00024 3.1e-306 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NDENIPDB_00025 6.7e-204 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
NDENIPDB_00026 1.3e-235 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NDENIPDB_00027 6.2e-90 S Protein of unknown function (DUF721)
NDENIPDB_00028 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
NDENIPDB_00029 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
NDENIPDB_00030 3.3e-68 S Transmembrane domain of unknown function (DUF3566)
NDENIPDB_00031 2.7e-260 gdhA 1.4.1.4 E Belongs to the Glu Leu Phe Val dehydrogenases family
NDENIPDB_00032 2.9e-58 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
NDENIPDB_00036 3.1e-101 S Protein of unknown function DUF45
NDENIPDB_00037 5e-187 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
NDENIPDB_00038 2.6e-239 ytfL P Transporter associated domain
NDENIPDB_00039 5.3e-119 cah 4.2.1.1 P Reversible hydration of carbon dioxide
NDENIPDB_00040 2.3e-144
NDENIPDB_00041 0.0 ppc 4.1.1.31 H Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
NDENIPDB_00042 0.0 yjjP S Threonine/Serine exporter, ThrE
NDENIPDB_00043 9.4e-300 putP E Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDENIPDB_00044 2.2e-204 trpS 6.1.1.2 J Belongs to the class-I aminoacyl-tRNA synthetase family
NDENIPDB_00045 4.9e-42 S Protein of unknown function (DUF3073)
NDENIPDB_00046 1.7e-63 I Sterol carrier protein
NDENIPDB_00047 0.0 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
NDENIPDB_00048 1.5e-35
NDENIPDB_00049 7.6e-146 gluP 3.4.21.105 S Rhomboid family
NDENIPDB_00050 3.6e-239 L ribosomal rna small subunit methyltransferase
NDENIPDB_00051 3.1e-57 crgA D Involved in cell division
NDENIPDB_00052 6.8e-142 S Bacterial protein of unknown function (DUF881)
NDENIPDB_00053 6.7e-209 srtA 3.4.22.70 M Sortase family
NDENIPDB_00054 1.7e-119 trpG 2.6.1.85 EH para-aminobenzoate synthase glutamine amidotransferase component II
NDENIPDB_00055 0.0 pknB 2.7.11.1 KLT Protein tyrosine kinase
NDENIPDB_00056 5.8e-177 T Protein tyrosine kinase
NDENIPDB_00057 2.7e-266 pbpA M penicillin-binding protein
NDENIPDB_00058 9.8e-275 rodA D Belongs to the SEDS family
NDENIPDB_00059 6.8e-242 pstP 3.1.3.16 T Sigma factor PP2C-like phosphatases
NDENIPDB_00060 5.2e-71 fhaB T Inner membrane component of T3SS, cytoplasmic domain
NDENIPDB_00061 1.2e-131 fhaA T Protein of unknown function (DUF2662)
NDENIPDB_00062 0.0 dpp4 3.4.14.5 E Dipeptidyl peptidase IV (DPP IV) N-terminal region
NDENIPDB_00063 2.1e-141 2.7.13.3 T Histidine kinase
NDENIPDB_00064 1.8e-65 2.7.13.3 T Histidine kinase
NDENIPDB_00065 3.2e-113 K helix_turn_helix, Lux Regulon
NDENIPDB_00066 6.6e-193 pldB 3.1.1.5 I Serine aminopeptidase, S33
NDENIPDB_00067 8.8e-160 yicL EG EamA-like transporter family
NDENIPDB_00068 5.4e-86 XK27_10430 S NAD(P)H-binding
NDENIPDB_00069 7.9e-44 ydeP K HxlR-like helix-turn-helix
NDENIPDB_00071 5.7e-266 tgt 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
NDENIPDB_00072 3.6e-285 degP O Domain present in PSD-95, Dlg, and ZO-1/2.
NDENIPDB_00073 0.0 cadA P E1-E2 ATPase
NDENIPDB_00074 7.9e-188 ansA 3.5.1.1 EJ Asparaginase
NDENIPDB_00075 3.1e-270 fprA 1.18.1.2, 1.19.1.1 C Pyridine nucleotide-disulphide oxidoreductase
NDENIPDB_00076 3.2e-163 htpX O Belongs to the peptidase M48B family
NDENIPDB_00078 1.1e-49
NDENIPDB_00079 2.2e-28
NDENIPDB_00080 4.3e-294 hsdM 2.1.1.72 V modification (methylase) protein of type I restriction-modification system K03427
NDENIPDB_00081 2.6e-07 S Protein of unknown function (DUF4238)
NDENIPDB_00082 9.5e-106 3.1.21.3 V Type I restriction modification DNA specificity domain
NDENIPDB_00083 1.4e-25 hsdS2 3.1.21.3 V Type I restriction modification DNA specificity domain
NDENIPDB_00084 2.8e-171 V Abi-like protein
NDENIPDB_00085 0.0 hsdR 3.1.21.3 V Subunit R is required for both nuclease and ATPase activities, but not for modification
NDENIPDB_00086 3.1e-28 S Bacterial mobilisation protein (MobC)
NDENIPDB_00087 1.5e-86 ltrBE1 U Relaxase/Mobilisation nuclease domain
NDENIPDB_00088 1.1e-186 K Helix-turn-helix XRE-family like proteins
NDENIPDB_00089 2.7e-169 yddG EG EamA-like transporter family
NDENIPDB_00090 0.0 pip S YhgE Pip domain protein
NDENIPDB_00091 0.0 pip S YhgE Pip domain protein
NDENIPDB_00092 7.7e-205 fbaA 4.1.2.13 G Fructose-bisphosphate aldolase class-II
NDENIPDB_00093 1.6e-249 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NDENIPDB_00094 1.1e-297 clcA P Voltage gated chloride channel
NDENIPDB_00095 3.1e-149 U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDENIPDB_00096 3.3e-57 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDENIPDB_00097 5.4e-29 E Receptor family ligand binding region
NDENIPDB_00098 1.1e-195 K helix_turn _helix lactose operon repressor
NDENIPDB_00099 3.4e-296 gtfA 2.4.1.329, 2.4.1.7 GH13 G Domain of unknown function (DUF1964)
NDENIPDB_00100 6.4e-114 S Protein of unknown function, DUF624
NDENIPDB_00101 0.0 3.2.1.1, 5.4.99.16 GH13 G Alpha-amylase domain
NDENIPDB_00102 4.5e-220 G Bacterial extracellular solute-binding protein
NDENIPDB_00103 1.1e-161 amyD3 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00104 1.6e-149 amyC5 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00105 6.9e-279 scrT G Transporter major facilitator family protein
NDENIPDB_00106 3.5e-252 yhjE EGP Sugar (and other) transporter
NDENIPDB_00107 1.8e-203 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
NDENIPDB_00108 4e-203 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
NDENIPDB_00109 0.0 3.1.1.53 E Carbohydrate esterase, sialic acid-specific acetylesterase
NDENIPDB_00110 5.8e-40 G beta-mannosidase
NDENIPDB_00111 3.6e-188 K helix_turn _helix lactose operon repressor
NDENIPDB_00112 1.4e-11 S Protein of unknown function, DUF624
NDENIPDB_00113 9.1e-270 aroP E aromatic amino acid transport protein AroP K03293
NDENIPDB_00114 0.0 V FtsX-like permease family
NDENIPDB_00115 3.3e-227 P Sodium/hydrogen exchanger family
NDENIPDB_00116 1.1e-75 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00117 3.1e-176 3.4.22.70 M Sortase family
NDENIPDB_00118 0.0 inlJ M domain protein
NDENIPDB_00119 5.2e-239 M domain protein
NDENIPDB_00120 1.3e-78 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00121 9.9e-275 cycA E Amino acid permease
NDENIPDB_00122 1.2e-166 thiG 2.8.1.10 H Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
NDENIPDB_00123 1e-128 thiF 2.7.7.73, 2.7.7.80 H ThiF family
NDENIPDB_00124 3.8e-26 thiS 2.8.1.10 H ThiS family
NDENIPDB_00125 1.8e-182 1.1.1.65 C Aldo/keto reductase family
NDENIPDB_00126 1.9e-57 ydgJ K helix_turn_helix multiple antibiotic resistance protein
NDENIPDB_00127 4.6e-285 lmrA1 V ABC transporter, ATP-binding protein
NDENIPDB_00128 0.0 lmrA2 V ABC transporter transmembrane region
NDENIPDB_00129 3.9e-120 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
NDENIPDB_00130 2e-237 G MFS/sugar transport protein
NDENIPDB_00131 1.2e-292 efeU_1 P Iron permease FTR1 family
NDENIPDB_00132 1.7e-90 tpd P Fe2+ transport protein
NDENIPDB_00133 2.5e-231 S Predicted membrane protein (DUF2318)
NDENIPDB_00134 3e-219 macB_2 V ABC transporter permease
NDENIPDB_00136 4.5e-201 Z012_06715 V FtsX-like permease family
NDENIPDB_00137 9e-150 macB V ABC transporter, ATP-binding protein
NDENIPDB_00138 1.1e-61 S FMN_bind
NDENIPDB_00139 4.1e-89 K Psort location Cytoplasmic, score 8.87
NDENIPDB_00140 6.3e-275 pip S YhgE Pip domain protein
NDENIPDB_00141 0.0 pip S YhgE Pip domain protein
NDENIPDB_00142 2e-225 S Putative ABC-transporter type IV
NDENIPDB_00143 6e-38 nrdH O Glutaredoxin
NDENIPDB_00146 4.7e-307 pepD E Peptidase family C69
NDENIPDB_00147 4e-195 XK27_01805 M Glycosyltransferase like family 2
NDENIPDB_00149 2.3e-109 icaR K Bacterial regulatory proteins, tetR family
NDENIPDB_00150 8.6e-168 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
NDENIPDB_00151 9.9e-236 amt U Ammonium Transporter Family
NDENIPDB_00152 1e-54 glnB K Nitrogen regulatory protein P-II
NDENIPDB_00153 0.0 2.7.7.19, 2.7.7.59 O Nucleotidyltransferase domain
NDENIPDB_00154 3.3e-248 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
NDENIPDB_00155 1.2e-251 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Domain of unknown function (DUF1727)
NDENIPDB_00156 2.1e-137 cobQ S CobB/CobQ-like glutamine amidotransferase domain
NDENIPDB_00157 1e-27 S granule-associated protein
NDENIPDB_00158 0.0 ubiB S ABC1 family
NDENIPDB_00159 6.3e-193 K Periplasmic binding protein domain
NDENIPDB_00160 1.1e-242 G Bacterial extracellular solute-binding protein
NDENIPDB_00161 8.6e-08 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00162 3.1e-167 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00163 9.3e-147 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00164 0.0 3.2.1.185 GH127 S Beta-L-arabinofuranosidase, GH127
NDENIPDB_00165 0.0 sca1 3.2.1.187 GH121 DG Bacterial Ig-like domain (group 4)
NDENIPDB_00166 6.1e-96 G Bacterial Ig-like domain (group 4)
NDENIPDB_00167 0.0 G Bacterial Ig-like domain (group 4)
NDENIPDB_00168 3.1e-67 G Bacterial Ig-like domain (group 4)
NDENIPDB_00169 2.3e-206 ugpQ 3.1.4.46 C Glycerophosphoryl diester phosphodiesterase family
NDENIPDB_00170 2.7e-117 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NDENIPDB_00171 3.9e-91
NDENIPDB_00172 4.5e-224 mutT 3.6.1.13, 3.6.1.55 LT Phosphoglycerate mutase family
NDENIPDB_00173 0.0 ppk 2.7.4.1 P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NDENIPDB_00175 1.1e-141 cpaE D bacterial-type flagellum organization
NDENIPDB_00176 2.3e-184 cpaF U Type II IV secretion system protein
NDENIPDB_00177 6.2e-126 U Type ii secretion system
NDENIPDB_00178 9.1e-87 gspF NU Type II secretion system (T2SS), protein F
NDENIPDB_00179 1.3e-42 S Protein of unknown function (DUF4244)
NDENIPDB_00180 5.1e-60 U TadE-like protein
NDENIPDB_00181 5.2e-55 S TIGRFAM helicase secretion neighborhood TadE-like protein
NDENIPDB_00182 3.5e-216 dagK 2.7.1.107 I Diacylglycerol kinase catalytic domain protein
NDENIPDB_00183 3.5e-193 S Psort location CytoplasmicMembrane, score
NDENIPDB_00184 1.1e-96 K Bacterial regulatory proteins, tetR family
NDENIPDB_00185 0.0 dnaX 2.7.7.7 L DNA polymerase III subunit gamma tau
NDENIPDB_00186 2.2e-105 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NDENIPDB_00187 3.4e-135 ask 1.1.1.3, 2.7.2.4 E Amino acid kinase family
NDENIPDB_00188 1.4e-96 askB 1.1.1.3, 2.7.2.4 E ACT domain
NDENIPDB_00189 1.8e-209 asd 1.2.1.11, 1.2.1.12 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NDENIPDB_00190 0.0 3.2.1.22 G lipolytic protein G-D-S-L family
NDENIPDB_00191 1.9e-271 rafA 3.2.1.22 G Psort location Cytoplasmic, score 8.87
NDENIPDB_00192 4.1e-232 G Bacterial extracellular solute-binding protein
NDENIPDB_00193 5.7e-156 malC G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00194 1e-126 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00195 5.4e-160 K Periplasmic binding protein domain
NDENIPDB_00196 5.9e-46 K Acetyltransferase (GNAT) family
NDENIPDB_00197 1.4e-21 S Protein of unknown function (DUF1778)
NDENIPDB_00199 1.1e-44 K helix_turn_helix, Lux Regulon
NDENIPDB_00200 3.8e-40
NDENIPDB_00201 2.4e-115
NDENIPDB_00202 7.9e-299 S Calcineurin-like phosphoesterase
NDENIPDB_00203 0.0 leuA 2.3.3.13 E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDENIPDB_00204 0.0 3.2.1.99 GH43 G C-terminal of Glycosyl hydrolases family 43
NDENIPDB_00205 0.0 3.2.1.99 GH43 G C-terminal of Glycosyl hydrolases family 43
NDENIPDB_00206 0.0 3.2.1.97 GH101 G Glycosyl hydrolases family 43
NDENIPDB_00207 4.1e-195 K helix_turn _helix lactose operon repressor
NDENIPDB_00208 2.3e-203 abf G Glycosyl hydrolases family 43
NDENIPDB_00209 4.8e-246 G Bacterial extracellular solute-binding protein
NDENIPDB_00210 9.1e-170 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00211 1.9e-156 U Binding-protein-dependent transport system inner membrane component
NDENIPDB_00212 0.0 S Beta-L-arabinofuranosidase, GH127
NDENIPDB_00213 0.0 mrcB 2.4.1.129, 3.4.16.4 GT51 M Transglycosylase
NDENIPDB_00214 2.7e-216 ino1 5.5.1.4 I Myo-inositol-1-phosphate synthase
NDENIPDB_00215 8.2e-84 K Cro/C1-type HTH DNA-binding domain
NDENIPDB_00216 0.0 pacL2 3.6.3.8 P Cation transporter/ATPase, N-terminus
NDENIPDB_00217 0.0 lacL 3.2.1.23 G Psort location Cytoplasmic, score 8.87
NDENIPDB_00218 2.3e-122 S Short repeat of unknown function (DUF308)
NDENIPDB_00219 2.3e-48 S Antitoxin component of a toxin-antitoxin (TA) module
NDENIPDB_00220 7.5e-55 DJ Addiction module toxin, RelE StbE family
NDENIPDB_00221 4.5e-13 S Psort location Extracellular, score 8.82
NDENIPDB_00222 2.8e-230 EGP Major facilitator Superfamily
NDENIPDB_00223 1.2e-175 rlmB 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDENIPDB_00224 2e-269 KLT Domain of unknown function (DUF4032)
NDENIPDB_00225 1.6e-210 ugpC E Belongs to the ABC transporter superfamily
NDENIPDB_00226 2.8e-131 K LytTr DNA-binding domain
NDENIPDB_00227 8e-234 T GHKL domain
NDENIPDB_00228 2.8e-209 clcA_2 P Voltage gated chloride channel
NDENIPDB_00229 8.8e-48 S Psort location Cytoplasmic, score
NDENIPDB_00230 1.9e-125
NDENIPDB_00231 6.2e-153 3.4.22.70 M Sortase family
NDENIPDB_00232 7.1e-268 M LPXTG-motif cell wall anchor domain protein
NDENIPDB_00233 0.0 S LPXTG-motif cell wall anchor domain protein
NDENIPDB_00234 1.4e-185 S LPXTG-motif cell wall anchor domain protein
NDENIPDB_00235 3.7e-10 S LPXTG-motif cell wall anchor domain protein
NDENIPDB_00236 1.1e-74 S GtrA-like protein
NDENIPDB_00237 0.0 3.2.1.21 GH3 G Glycosyl hydrolase family 3 N-terminal domain protein
NDENIPDB_00238 9.8e-121 ybjG 3.6.1.27 I Psort location CytoplasmicMembrane, score
NDENIPDB_00239 1.6e-81 ypeA 2.3.1.1 K Psort location Cytoplasmic, score 8.87
NDENIPDB_00240 1.1e-113 vex2 V ABC transporter, ATP-binding protein
NDENIPDB_00241 4.5e-214 vex1 V Efflux ABC transporter, permease protein
NDENIPDB_00242 2.9e-241 vex3 V ABC transporter permease
NDENIPDB_00243 1.2e-34 lacS G Psort location CytoplasmicMembrane, score 10.00
NDENIPDB_00244 4.2e-38 3.6.4.12 K Putative ATP-dependent DNA helicase recG C-terminal
NDENIPDB_00245 5.7e-229 yhjX EGP Major facilitator Superfamily
NDENIPDB_00246 0.0 trxB1 1.8.1.9 C Thioredoxin domain
NDENIPDB_00247 1.7e-107 ahpC 1.11.1.15 O C-terminal domain of 1-Cys peroxiredoxin
NDENIPDB_00248 1.1e-169 I alpha/beta hydrolase fold
NDENIPDB_00250 6.2e-145 cobB2 K Sir2 family
NDENIPDB_00251 2e-233 tdcB 4.3.1.19 E Pyridoxal-phosphate dependent enzyme
NDENIPDB_00252 0.0 3.2.1.10 GH13 G Alpha amylase, catalytic domain protein
NDENIPDB_00253 2.6e-155 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00254 6.6e-157 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00255 1.5e-244 msmE7 G Bacterial extracellular solute-binding protein
NDENIPDB_00256 4e-231 nagC GK ROK family
NDENIPDB_00257 0.0 3.2.1.22 G Glycosyl hydrolase family 36 N-terminal domain
NDENIPDB_00258 3.8e-82 tadA 3.5.4.1, 3.5.4.33, 3.8.1.5, 6.3.4.19 FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
NDENIPDB_00259 0.0 yjcE P Sodium/hydrogen exchanger family
NDENIPDB_00260 1.2e-138 ypfH S Phospholipase/Carboxylesterase
NDENIPDB_00261 4e-112 dcd 3.5.4.13 F Belongs to the dCTP deaminase family
NDENIPDB_00262 4.1e-110 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_00263 1.2e-167 G ABC transporter permease
NDENIPDB_00264 5.9e-235 glf 5.4.99.9 M UDP-galactopyranose mutase
NDENIPDB_00265 2.1e-191 3.6.1.27 I PAP2 superfamily
NDENIPDB_00266 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NDENIPDB_00267 9.2e-113 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NDENIPDB_00268 1.9e-193 holB 2.7.7.7 L DNA polymerase III
NDENIPDB_00269 2.4e-184 K helix_turn _helix lactose operon repressor
NDENIPDB_00270 6e-39 ptsH G PTS HPr component phosphorylation site
NDENIPDB_00271 2.4e-287 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NDENIPDB_00272 1.1e-106 S Phosphatidylethanolamine-binding protein
NDENIPDB_00273 0.0 pepD E Peptidase family C69
NDENIPDB_00274 9.1e-289 fhs 1.5.1.5, 3.5.4.9, 6.3.4.3 F Formate-tetrahydrofolate ligase
NDENIPDB_00275 6.7e-62 S Macrophage migration inhibitory factor (MIF)
NDENIPDB_00276 7.1e-95 S GtrA-like protein
NDENIPDB_00277 1e-262 EGP Major facilitator Superfamily
NDENIPDB_00278 1.5e-123 3.1.3.3, 3.1.3.73 G Phosphoglycerate mutase family
NDENIPDB_00279 7e-184
NDENIPDB_00280 1.2e-111 S Protein of unknown function (DUF805)
NDENIPDB_00281 5.5e-297 gltX 6.1.1.17 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDENIPDB_00284 8.8e-268 S Calcineurin-like phosphoesterase
NDENIPDB_00285 1.1e-139 ltbR K Transcriptional regulator, IclR family, C-terminal domain protein
NDENIPDB_00286 7.1e-272 leuC 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NDENIPDB_00287 1.3e-131 leuD 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NDENIPDB_00288 3.6e-200 pyrD 1.3.1.14, 1.3.98.1 F Dihydroorotate dehydrogenase
NDENIPDB_00289 1e-256 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NDENIPDB_00290 2.1e-176 plsC2 2.3.1.51 I Phosphate acyltransferases
NDENIPDB_00291 1.7e-179 gpsA 1.1.1.94 I NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
NDENIPDB_00292 1.2e-219 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
NDENIPDB_00293 5.3e-177 S CAAX protease self-immunity
NDENIPDB_00294 1.7e-137 M Mechanosensitive ion channel
NDENIPDB_00295 5.9e-230 MA20_36090 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00296 6e-227 MA20_36090 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00297 6.3e-125 K Bacterial regulatory proteins, tetR family
NDENIPDB_00298 1.4e-231 yhdR 2.6.1.1 E Psort location Cytoplasmic, score 8.87
NDENIPDB_00299 2e-166 gnd 1.1.1.343, 1.1.1.44 G 6-phosphogluconate dehydrogenase, C-terminal domain
NDENIPDB_00301 1.3e-227 gnuT EG GntP family permease
NDENIPDB_00302 4.1e-82 gntK 2.7.1.12 F Shikimate kinase
NDENIPDB_00303 1.9e-127 gntR K FCD
NDENIPDB_00304 3.3e-226 yxiO S Vacuole effluxer Atg22 like
NDENIPDB_00305 0.0 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00306 8.4e-30 rpmB J Ribosomal L28 family
NDENIPDB_00307 0.0 recG 3.6.4.12 L helicase superfamily c-terminal domain
NDENIPDB_00308 2.4e-91 rsmD 2.1.1.171 L Conserved hypothetical protein 95
NDENIPDB_00309 1.5e-90 K helix_turn_helix, arabinose operon control protein
NDENIPDB_00310 3.2e-138 uhpT EGP Major facilitator Superfamily
NDENIPDB_00311 2.1e-148 I alpha/beta hydrolase fold
NDENIPDB_00312 1.7e-148 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
NDENIPDB_00313 3.6e-108 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NDENIPDB_00314 1.8e-34 CP_0960 S Belongs to the UPF0109 family
NDENIPDB_00315 4.3e-53 rpsP J Belongs to the bacterial ribosomal protein bS16 family
NDENIPDB_00316 8.9e-179 S Endonuclease/Exonuclease/phosphatase family
NDENIPDB_00317 2.7e-270 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NDENIPDB_00318 7.9e-302 cysS 6.1.1.16 J Belongs to the class-I aminoacyl-tRNA synthetase family
NDENIPDB_00319 1.2e-151 guaA1 6.3.5.2 F Peptidase C26
NDENIPDB_00320 0.0 yjjK S ABC transporter
NDENIPDB_00321 1e-93
NDENIPDB_00323 5.7e-92 ilvN 2.2.1.6 E ACT domain
NDENIPDB_00324 0.0 ilvB 2.2.1.6 H Thiamine pyrophosphate enzyme, central domain
NDENIPDB_00325 5.7e-136 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
NDENIPDB_00326 1e-19 rpmF J Belongs to the bacterial ribosomal protein bL32 family
NDENIPDB_00327 8.8e-113 yceD S Uncharacterized ACR, COG1399
NDENIPDB_00328 5.5e-133
NDENIPDB_00329 7.7e-88 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
NDENIPDB_00330 1.2e-57 S Protein of unknown function (DUF3039)
NDENIPDB_00331 1.7e-195 yghZ C Aldo/keto reductase family
NDENIPDB_00332 3.2e-77 soxR K MerR, DNA binding
NDENIPDB_00333 3.6e-120 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NDENIPDB_00334 1e-139 rph 2.7.7.56, 3.6.1.66 J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NDENIPDB_00335 1.7e-251 pncB 6.3.4.21 F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NDENIPDB_00336 4.9e-219 murN 2.3.2.16 V Psort location Cytoplasmic, score 8.87
NDENIPDB_00337 1.5e-220 murN 2.3.2.16 V Psort location Cytoplasmic, score 8.87
NDENIPDB_00340 1e-179 S Auxin Efflux Carrier
NDENIPDB_00341 0.0 pgi 5.3.1.9 G Belongs to the GPI family
NDENIPDB_00342 3e-60 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
NDENIPDB_00343 1.1e-123 lepB 3.4.21.89 U Belongs to the peptidase S26 family
NDENIPDB_00344 2.7e-137 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NDENIPDB_00345 5e-128 V ATPases associated with a variety of cellular activities
NDENIPDB_00346 1.6e-269 V Efflux ABC transporter, permease protein
NDENIPDB_00347 2.7e-166 mdcF S Transporter, auxin efflux carrier (AEC) family protein
NDENIPDB_00348 4.9e-229 dapE 3.5.1.18 E Peptidase dimerisation domain
NDENIPDB_00349 8.6e-309 rne 3.1.26.12 J Ribonuclease E/G family
NDENIPDB_00350 2.4e-47 rplU J This protein binds to 23S rRNA in the presence of protein L20
NDENIPDB_00351 2.6e-39 rpmA J Ribosomal L27 protein
NDENIPDB_00352 1e-296 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NDENIPDB_00353 3e-204 proB 2.7.2.11 E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
NDENIPDB_00354 7.4e-233 aspC E DegT/DnrJ/EryC1/StrS aminotransferase family
NDENIPDB_00356 1.2e-32 secE U Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
NDENIPDB_00357 2.9e-129 nusG K Participates in transcription elongation, termination and antitermination
NDENIPDB_00358 2.3e-72 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NDENIPDB_00359 3e-122 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
NDENIPDB_00360 5.9e-143 QT PucR C-terminal helix-turn-helix domain
NDENIPDB_00361 0.0
NDENIPDB_00362 1.3e-162 birA 2.7.1.33, 6.3.4.15 H Biotin/lipoate A/B protein ligase family
NDENIPDB_00363 2.1e-79 bioY S BioY family
NDENIPDB_00364 0.0 accA 6.3.4.14, 6.4.1.2, 6.4.1.3 I Carbamoyl-phosphate synthase L chain, ATP binding domain protein
NDENIPDB_00365 0.0 pccB I Carboxyl transferase domain
NDENIPDB_00366 0.0 fas 2.3.1.179 I Beta-ketoacyl synthase, C-terminal domain
NDENIPDB_00367 1.2e-82 acpS 2.7.8.7, 3.2.1.52 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
NDENIPDB_00368 0.0 ams 2.4.1.4, 3.2.1.1, 5.4.99.16 GH13 G Alpha amylase, catalytic domain
NDENIPDB_00370 2.4e-116
NDENIPDB_00371 1.7e-41 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NDENIPDB_00372 0.0 pnp 2.7.7.8 J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
NDENIPDB_00373 1.7e-91 lemA S LemA family
NDENIPDB_00374 0.0 S Predicted membrane protein (DUF2207)
NDENIPDB_00375 3.7e-170 1.1.1.65 C Oxidoreductase, aldo keto reductase family protein
NDENIPDB_00376 7e-297 yegQ O Peptidase family U32 C-terminal domain
NDENIPDB_00377 4.1e-184 yfiH Q Multi-copper polyphenol oxidoreductase laccase
NDENIPDB_00378 2.5e-144 ispD 1.1.1.405, 2.7.7.40, 2.7.7.60, 4.6.1.12 I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)
NDENIPDB_00379 4.9e-125 pcp 3.4.19.3 O Removes 5-oxoproline from various penultimate amino acid residues except L-proline
NDENIPDB_00380 3.3e-57 D nuclear chromosome segregation
NDENIPDB_00381 5.1e-267 pepC 3.4.22.40 E Peptidase C1-like family
NDENIPDB_00382 9.7e-211 aroG 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDENIPDB_00383 1.3e-221 aroG 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDENIPDB_00384 4e-122 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NDENIPDB_00385 1.8e-219 senX3 2.7.13.3 T His Kinase A (phosphoacceptor) domain
NDENIPDB_00386 1.3e-128 KT Transcriptional regulatory protein, C terminal
NDENIPDB_00387 2.1e-197 pstS P Part of the ABC transporter complex PstSACB involved in phosphate import
NDENIPDB_00388 1.5e-164 pstC P probably responsible for the translocation of the substrate across the membrane
NDENIPDB_00389 4e-168 pstA P Phosphate transport system permease
NDENIPDB_00390 3.6e-148 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
NDENIPDB_00391 2.8e-144 P Zinc-uptake complex component A periplasmic
NDENIPDB_00392 1.1e-245 pbuO S Permease family
NDENIPDB_00393 1.6e-88 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NDENIPDB_00394 2.4e-36 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
NDENIPDB_00395 8.1e-207 T Forkhead associated domain
NDENIPDB_00396 0.0 L Superfamily I DNA and RNA helicases and helicase subunits
NDENIPDB_00397 8.3e-44
NDENIPDB_00398 2.6e-89 flgA NO SAF
NDENIPDB_00399 4.6e-30 fmdB S Putative regulatory protein
NDENIPDB_00400 2.6e-97 fthC 6.3.3.2 H 5-formyltetrahydrofolate cyclo-ligase family
NDENIPDB_00401 1.8e-132 rimJ 2.3.1.128 J Acetyltransferase (GNAT) domain
NDENIPDB_00402 7.4e-177
NDENIPDB_00403 2.5e-46 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
NDENIPDB_00407 5.5e-25 rpmG J Ribosomal protein L33
NDENIPDB_00408 7.6e-214 murB 1.3.1.98 M Cell wall formation
NDENIPDB_00409 1.1e-267 E aromatic amino acid transport protein AroP K03293
NDENIPDB_00410 8.3e-59 fdxA C 4Fe-4S binding domain
NDENIPDB_00411 9.2e-217 dapC E Aminotransferase class I and II
NDENIPDB_00412 0.0 E Bacterial extracellular solute-binding proteins, family 5 Middle
NDENIPDB_00413 3.7e-182 EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_00414 1.5e-140 EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_00415 4.6e-157 oppD EP Oligopeptide/dipeptide transporter, C-terminal region
NDENIPDB_00416 4.8e-151 dppF E ABC transporter
NDENIPDB_00417 0.0 xynB 3.2.1.37 GH43 G Belongs to the glycosyl hydrolase 43 family
NDENIPDB_00419 0.0 G Psort location Cytoplasmic, score 8.87
NDENIPDB_00420 1.8e-233 3.2.1.156 GH8 G CBM9 module, glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein K01238
NDENIPDB_00421 0.0 G candidate polyfunctional acetylxylan esterase b-xylosidase A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238
NDENIPDB_00422 1.6e-298 CE10 I Belongs to the type-B carboxylesterase lipase family
NDENIPDB_00424 1.7e-222 dinB 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NDENIPDB_00425 1.8e-251 M Bacterial capsule synthesis protein PGA_cap
NDENIPDB_00426 9.4e-186 MA20_16500 1.1.1.399, 1.1.1.95 EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NDENIPDB_00427 8.1e-114 yigZ 2.1.1.45, 3.4.13.9 S Uncharacterized protein family UPF0029
NDENIPDB_00428 3.1e-122
NDENIPDB_00429 0.0 malQ 2.4.1.18, 2.4.1.25, 3.2.1.196, 5.4.99.15 CBM48,GH13,GH77 G 4-alpha-glucanotransferase
NDENIPDB_00430 2.4e-80 rplM J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NDENIPDB_00431 3.4e-67 rpsI J Belongs to the universal ribosomal protein uS9 family
NDENIPDB_00432 0.0 glgX 3.2.1.196, 3.2.1.68 CBM48,GH13 G Belongs to the glycosyl hydrolase 13 family
NDENIPDB_00433 2.8e-177 tdh 1.1.1.14 C Zinc-binding dehydrogenase
NDENIPDB_00434 3.2e-226 EGP Major facilitator Superfamily
NDENIPDB_00435 1.8e-74 4.4.1.5 E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
NDENIPDB_00436 1e-215 2.7.1.2 GK transcriptional repressor of nag (N-acetylglucosamine) operon K02565
NDENIPDB_00437 3.6e-238 EGP Major facilitator Superfamily
NDENIPDB_00438 9.5e-197 Z012_01000 1.1.1.14, 1.1.1.9 C Zinc-binding dehydrogenase
NDENIPDB_00439 7.3e-183 rhaR_1 K helix_turn_helix, arabinose operon control protein
NDENIPDB_00440 0.0 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
NDENIPDB_00441 5.2e-50 rpsJ J Involved in the binding of tRNA to the ribosomes
NDENIPDB_00442 2.3e-116 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NDENIPDB_00443 1.4e-116 rplD J Forms part of the polypeptide exit tunnel
NDENIPDB_00444 6.8e-47 rplW J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
NDENIPDB_00445 6.1e-154 rplB J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NDENIPDB_00446 1.3e-47 rpsS J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NDENIPDB_00447 1.9e-56 rplV J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NDENIPDB_00448 1e-97 rpsC J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
NDENIPDB_00449 1.7e-75 rplP J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NDENIPDB_00450 5e-38 rpmC J Belongs to the universal ribosomal protein uL29 family
NDENIPDB_00451 4.9e-41 rpsQ J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NDENIPDB_00452 3e-60 rplN J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NDENIPDB_00453 8.7e-51 rplX J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NDENIPDB_00454 7.5e-103 rplE J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NDENIPDB_00455 8.9e-29 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
NDENIPDB_00456 5.5e-68 rpsH J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
NDENIPDB_00457 3.8e-96 rplF J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
NDENIPDB_00458 3.3e-59 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
NDENIPDB_00459 1.2e-92 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NDENIPDB_00460 3.4e-25 rpmD J Ribosomal protein L30p/L7e
NDENIPDB_00461 3.7e-73 rplO J binds to the 23S rRNA
NDENIPDB_00462 3.8e-238 secY U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
NDENIPDB_00463 2.5e-98 adk 2.7.4.3 F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
NDENIPDB_00464 1.6e-32 infA J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NDENIPDB_00465 8.4e-14 rpmJ J Belongs to the bacterial ribosomal protein bL36 family
NDENIPDB_00466 3.3e-62 rpsM J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NDENIPDB_00467 1.9e-65 rpsK J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
NDENIPDB_00468 4.7e-185 rpoA 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NDENIPDB_00469 1.3e-66 rplQ J Ribosomal protein L17
NDENIPDB_00470 1.7e-182 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
NDENIPDB_00472 2e-102
NDENIPDB_00473 6.1e-191 nusA K Participates in both transcription termination and antitermination
NDENIPDB_00474 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
NDENIPDB_00475 2.2e-69 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NDENIPDB_00476 1.1e-187 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NDENIPDB_00477 4e-218 ribF 2.7.1.26, 2.7.7.2 H riboflavin kinase
NDENIPDB_00478 4.1e-251 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
NDENIPDB_00479 1.9e-107
NDENIPDB_00481 2.4e-127 rpiA 2.7.1.12, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NDENIPDB_00482 3.9e-213 rnhA 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NDENIPDB_00483 1.3e-249 T GHKL domain
NDENIPDB_00484 4.7e-151 T LytTr DNA-binding domain
NDENIPDB_00485 0.0 pgm 5.4.2.2 G Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
NDENIPDB_00486 0.0 crr G pts system, glucose-specific IIABC component
NDENIPDB_00487 8e-157 arbG K CAT RNA binding domain
NDENIPDB_00488 9.8e-200 I Diacylglycerol kinase catalytic domain
NDENIPDB_00489 1.2e-247 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NDENIPDB_00491 2.5e-186 yegU O ADP-ribosylglycohydrolase
NDENIPDB_00492 8.3e-190 yegV G pfkB family carbohydrate kinase
NDENIPDB_00493 1.1e-270 U Permease for cytosine/purines, uracil, thiamine, allantoin
NDENIPDB_00494 5.6e-103 Q Isochorismatase family
NDENIPDB_00495 2.3e-214 S Choline/ethanolamine kinase
NDENIPDB_00496 1.3e-274 eat E Amino acid permease
NDENIPDB_00497 2e-263 gabT 2.6.1.19, 2.6.1.22 H Aminotransferase class-III
NDENIPDB_00498 3.9e-142 yidP K UTRA
NDENIPDB_00499 5.6e-121 degU K helix_turn_helix, Lux Regulon
NDENIPDB_00500 2.2e-266 tcsS3 KT PspC domain
NDENIPDB_00501 5.7e-147 pspC KT PspC domain
NDENIPDB_00502 1.6e-92
NDENIPDB_00503 1.5e-115 S Protein of unknown function (DUF4125)
NDENIPDB_00504 0.0 S Domain of unknown function (DUF4037)
NDENIPDB_00505 4.6e-211 araJ EGP Major facilitator Superfamily
NDENIPDB_00507 0.0 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
NDENIPDB_00508 4.9e-193 K helix_turn _helix lactose operon repressor
NDENIPDB_00509 8.8e-251 G Psort location CytoplasmicMembrane, score 10.00
NDENIPDB_00510 3.2e-99 S Serine aminopeptidase, S33
NDENIPDB_00511 1.1e-206 menA 2.5.1.74 H Belongs to the MenA family. Type 1 subfamily
NDENIPDB_00512 3e-139 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NDENIPDB_00513 0.0 4.2.1.53 S MCRA family
NDENIPDB_00514 3.3e-89 phoU P Plays a role in the regulation of phosphate uptake
NDENIPDB_00515 1.4e-215 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
NDENIPDB_00516 6.2e-41
NDENIPDB_00517 8.2e-218 serC 2.6.1.52 E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NDENIPDB_00518 1.3e-165 usp 3.5.1.28 CBM50 S CHAP domain
NDENIPDB_00519 6.5e-79 M NlpC/P60 family
NDENIPDB_00520 1.3e-190 T Universal stress protein family
NDENIPDB_00521 7.7e-73 attW O OsmC-like protein
NDENIPDB_00522 3.8e-181 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
NDENIPDB_00523 6.4e-130 folA 1.5.1.3 H dihydrofolate reductase
NDENIPDB_00524 3.6e-85 ptpA 3.1.3.48 T low molecular weight
NDENIPDB_00526 9e-200 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
NDENIPDB_00527 6.5e-170 trmB 2.1.1.297, 2.1.1.33, 2.4.99.12, 2.4.99.13, 2.4.99.14, 2.4.99.15 GT30 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
NDENIPDB_00531 0.0 5.1.3.2 GM ADP-glyceromanno-heptose 6-epimerase activity
NDENIPDB_00532 2.5e-161
NDENIPDB_00533 0.0 S Uncharacterised protein conserved in bacteria (DUF2194)
NDENIPDB_00534 1.6e-282 pelF GT4 M Domain of unknown function (DUF3492)
NDENIPDB_00535 4e-284 pelG S Putative exopolysaccharide Exporter (EPS-E)
NDENIPDB_00536 1.6e-308 cotH M CotH kinase protein
NDENIPDB_00537 1.4e-158 P VTC domain
NDENIPDB_00538 2.2e-111 S Domain of unknown function (DUF4956)
NDENIPDB_00539 0.0 yliE T Putative diguanylate phosphodiesterase
NDENIPDB_00540 1.8e-204 fucO 1.1.1.1, 1.1.1.77, 1.1.99.37, 1.2.98.1 C Iron-containing alcohol dehydrogenase
NDENIPDB_00541 5.5e-180 3.4.14.13 M Glycosyltransferase like family 2
NDENIPDB_00542 1.8e-236 S AI-2E family transporter
NDENIPDB_00543 6.3e-232 epsG M Glycosyl transferase family 21
NDENIPDB_00544 1.1e-232 dacB 3.4.16.4 M D-Ala-D-Ala carboxypeptidase 3 (S13) family
NDENIPDB_00545 3.3e-200 tilS 2.4.2.8, 6.3.4.19 J Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
NDENIPDB_00546 3.9e-99 hpt 2.4.2.8, 6.3.4.19 F Belongs to the purine pyrimidine phosphoribosyltransferase family
NDENIPDB_00547 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NDENIPDB_00548 9.6e-115 folE 2.7.6.3, 3.5.4.16 H GTP cyclohydrolase
NDENIPDB_00549 9e-156 folP 1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8 H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NDENIPDB_00550 7.7e-272 folK 1.13.11.81, 2.5.1.15, 2.7.6.3, 3.5.4.16, 3.5.4.39, 4.1.2.25, 5.1.99.8 H Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NDENIPDB_00551 3.1e-93 S Protein of unknown function (DUF3180)
NDENIPDB_00552 8.5e-165 tesB I Thioesterase-like superfamily
NDENIPDB_00553 0.0 yjjK S ATP-binding cassette protein, ChvD family
NDENIPDB_00554 2.2e-181 V Beta-lactamase
NDENIPDB_00555 2.5e-74 def2 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
NDENIPDB_00556 1.5e-81 ribD 1.1.1.193, 3.5.4.26 H Cytidine and deoxycytidylate deaminase zinc-binding region
NDENIPDB_00557 1.8e-155 L PFAM Integrase catalytic
NDENIPDB_00558 0.0 O Highly conserved protein containing a thioredoxin domain
NDENIPDB_00559 1.5e-232 3.2.1.156 GH8 G CBM9 module, glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein K01238
NDENIPDB_00560 0.0 3.2.1.8 G Glycosyl hydrolase family 10
NDENIPDB_00561 2.9e-118 L Integrase core domain
NDENIPDB_00563 0.0 3.1.1.53 G Glycosyl hydrolase family 2, sugar binding domain protein
NDENIPDB_00564 1.2e-224 bdhA C Iron-containing alcohol dehydrogenase
NDENIPDB_00565 2.8e-24 ykoE S ABC-type cobalt transport system, permease component
NDENIPDB_00566 1.7e-16 ydcZ S Putative inner membrane exporter, YdcZ
NDENIPDB_00567 1.8e-34 S Membrane
NDENIPDB_00569 3.1e-51 S Membrane
NDENIPDB_00570 3.5e-269 3.6.4.12 K Putative ATP-dependent DNA helicase recG C-terminal
NDENIPDB_00571 1.6e-249 metY 2.5.1.49 H Psort location Cytoplasmic, score 9.98
NDENIPDB_00572 1.3e-267 xylA 5.3.1.5 G Belongs to the xylose isomerase family
NDENIPDB_00573 0.0 3.2.1.37, 3.2.1.55 GH43,GH51 G Belongs to the glycosyl hydrolase 43 family
NDENIPDB_00574 1.9e-181 K Bacterial regulatory proteins, lacI family
NDENIPDB_00575 9.4e-239 msmE G ABC transporter periplasmic binding protein YcjN precursor K02027
NDENIPDB_00576 1.7e-185 MA20_14025 U Binding-protein-dependent transport system inner membrane component
NDENIPDB_00577 2.4e-164 MA20_14020 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00578 0.0 xynB 3.2.1.37 GH43 G Belongs to the glycosyl hydrolase 43 family
NDENIPDB_00579 0.0 3.1.1.53 G Glycosyl hydrolase family 2, sugar binding domain protein
NDENIPDB_00580 9.7e-09 CE10 I Belongs to the type-B carboxylesterase lipase family
NDENIPDB_00581 2.1e-106 lacA 2.3.1.79 S Bacterial transferase hexapeptide repeat protein
NDENIPDB_00582 2.6e-288 xylB 1.1.1.57, 2.7.1.17 G FGGY family of carbohydrate kinases, C-terminal domain
NDENIPDB_00583 5.7e-225 xylR GK ROK family
NDENIPDB_00585 1.5e-35 rpmE J Binds the 23S rRNA
NDENIPDB_00586 1.4e-190 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NDENIPDB_00587 3.2e-172 prmC 2.1.1.297 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
NDENIPDB_00588 2.7e-219 livK E Receptor family ligand binding region
NDENIPDB_00589 9.5e-156 U Belongs to the binding-protein-dependent transport system permease family
NDENIPDB_00590 6.7e-196 livM U Belongs to the binding-protein-dependent transport system permease family
NDENIPDB_00591 4.8e-151 E Branched-chain amino acid ATP-binding cassette transporter
NDENIPDB_00592 1.9e-124 livF E ATPases associated with a variety of cellular activities
NDENIPDB_00593 3.8e-114 ywlC 2.7.7.87 J Belongs to the SUA5 family
NDENIPDB_00594 4.9e-194 tagO 2.7.8.33, 2.7.8.35 M Glycosyl transferase family 4
NDENIPDB_00595 2.2e-287 guaB 1.1.1.205 F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
NDENIPDB_00596 1.6e-120 orn L 3'-to-5' exoribonuclease specific for small oligoribonucleotides
NDENIPDB_00597 5e-162 supH S Sucrose-6F-phosphate phosphohydrolase
NDENIPDB_00598 7.9e-271 recD2 3.6.4.12 L PIF1-like helicase
NDENIPDB_00599 0.0 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
NDENIPDB_00600 4e-98 L Single-strand binding protein family
NDENIPDB_00601 0.0 pepO 3.4.24.71 O Peptidase family M13
NDENIPDB_00602 1.6e-151 map 3.4.11.18 E Methionine aminopeptidase
NDENIPDB_00603 1.6e-249 gltA 2.3.3.1 C Citrate synthase, C-terminal domain
NDENIPDB_00604 1.7e-142 dapD 2.3.1.117 E Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA
NDENIPDB_00605 4e-81 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NDENIPDB_00606 2.5e-190 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
NDENIPDB_00607 2.3e-168 ftsE D Cell division ATP-binding protein FtsE
NDENIPDB_00608 3.4e-161 ftsX D Part of the ABC transporter FtsEX involved in cellular division
NDENIPDB_00609 8.9e-150 usp 3.5.1.28 CBM50 D CHAP domain protein
NDENIPDB_00610 2e-77 smpB J the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
NDENIPDB_00611 3e-157 pknD ET ABC transporter, substrate-binding protein, family 3
NDENIPDB_00612 2.4e-61 pknD ET ABC transporter, substrate-binding protein, family 3
NDENIPDB_00613 3.2e-151 pknD ET ABC transporter, substrate-binding protein, family 3
NDENIPDB_00614 2.2e-126 yecS E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00615 8.5e-145 tcyC 3.6.3.21 E ATPases associated with a variety of cellular activities
NDENIPDB_00616 0.0 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
NDENIPDB_00617 2.1e-145 rluA 5.4.99.28, 5.4.99.29 J RNA pseudouridylate synthase
NDENIPDB_00618 5.3e-229 sstT E Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NDENIPDB_00619 7.8e-188 K Periplasmic binding protein domain
NDENIPDB_00620 0.0 lacZ5 3.2.1.23 G Psort location Cytoplasmic, score 8.87
NDENIPDB_00621 0.0 abfA1 3.2.1.55 GH51 G arabinose metabolic process
NDENIPDB_00622 3.8e-246 G Bacterial extracellular solute-binding protein
NDENIPDB_00623 5.3e-275 G Bacterial extracellular solute-binding protein
NDENIPDB_00624 5.8e-116 K Transcriptional regulatory protein, C terminal
NDENIPDB_00625 1.8e-142 T His Kinase A (phosphoacceptor) domain
NDENIPDB_00626 7e-82 S SnoaL-like domain
NDENIPDB_00627 4.5e-143 coaX 2.7.1.33 H Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
NDENIPDB_00628 2.7e-241 coaBC 4.1.1.36, 6.3.2.5 H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NDENIPDB_00629 3e-293 E ABC transporter, substrate-binding protein, family 5
NDENIPDB_00630 1.3e-166 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_00631 1.2e-139 EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_00632 7.1e-136 oppD EP oligopeptide transport protein of the ABC superfamily, ATP-binding component
NDENIPDB_00633 4e-139 sapF E ATPases associated with a variety of cellular activities
NDENIPDB_00634 9.9e-191 cbs 2.5.1.47, 4.2.1.22 E Pyridoxal-phosphate dependent enzyme
NDENIPDB_00635 1e-218 metB 2.5.1.48, 4.4.1.1, 4.4.1.8 E Cys/Met metabolism PLP-dependent enzyme
NDENIPDB_00636 0.0 macB_2 V ATPases associated with a variety of cellular activities
NDENIPDB_00637 0.0 recQ 3.6.4.12 L ATP-dependent DNA helicase RecQ
NDENIPDB_00638 3.9e-92 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
NDENIPDB_00639 2.7e-102 cysE 2.3.1.178 J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NDENIPDB_00640 3.1e-270 yhdG E aromatic amino acid transport protein AroP K03293
NDENIPDB_00641 2e-307 alr 5.1.1.1 M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NDENIPDB_00642 0.0 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
NDENIPDB_00644 6.6e-193 ybiR P Citrate transporter
NDENIPDB_00646 0.0 tetP J Elongation factor G, domain IV
NDENIPDB_00650 3.8e-100 K acetyltransferase
NDENIPDB_00651 4e-108 papP E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00652 3.6e-120 E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00653 1.5e-152 glnQ 3.6.3.21 E ATP binding protein of ABC transporter for glutamate aspartate K02028
NDENIPDB_00654 5e-141 cjaA ET Bacterial periplasmic substrate-binding proteins
NDENIPDB_00655 1.4e-200 panE1 1.1.1.169 H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NDENIPDB_00656 6.9e-156 metQ M NLPA lipoprotein
NDENIPDB_00657 6.5e-193 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NDENIPDB_00658 4.9e-98 metI P Psort location CytoplasmicMembrane, score 9.99
NDENIPDB_00659 7.4e-222 mtnE 2.6.1.83 E Aminotransferase class I and II
NDENIPDB_00660 1.4e-73 metC 2.5.1.48, 4.4.1.8 E Cys/Met metabolism PLP-dependent enzyme
NDENIPDB_00661 1.4e-43 XAC3035 O Glutaredoxin
NDENIPDB_00662 3.1e-127 XK27_08050 O prohibitin homologues
NDENIPDB_00663 4.3e-75
NDENIPDB_00664 2.8e-134 V ATPases associated with a variety of cellular activities
NDENIPDB_00665 2.8e-146 M Conserved repeat domain
NDENIPDB_00666 2.6e-256 macB_8 V MacB-like periplasmic core domain
NDENIPDB_00667 0.0 dxs 2.2.1.7 H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NDENIPDB_00668 3.3e-183 adh3 C Zinc-binding dehydrogenase
NDENIPDB_00669 1.1e-84 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
NDENIPDB_00670 1.3e-226 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NDENIPDB_00671 6.8e-89 zur P Belongs to the Fur family
NDENIPDB_00672 0.0 XK27_08315 M Psort location CytoplasmicMembrane, score 9.26
NDENIPDB_00673 2.5e-203 psuK 2.7.1.15, 2.7.1.45, 2.7.1.83 G pfkB family carbohydrate kinase
NDENIPDB_00674 2.7e-188 yeiI 2.7.1.15, 2.7.1.45, 2.7.1.83 G pfkB family carbohydrate kinase
NDENIPDB_00675 3.3e-129 trpF 5.3.1.24 E N-(5'phosphoribosyl)anthranilate (PRA) isomerase
NDENIPDB_00676 1.1e-214 1.1.1.1 C Iron-containing alcohol dehydrogenase
NDENIPDB_00677 1.1e-183 rihB 3.2.2.1 F Inosine-uridine preferring nucleoside hydrolase
NDENIPDB_00678 8e-247 EGP Major facilitator Superfamily
NDENIPDB_00679 1.7e-235 purD 6.3.4.13 F Belongs to the GARS family
NDENIPDB_00680 8.3e-185 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
NDENIPDB_00681 1e-284 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
NDENIPDB_00682 2.3e-311 umuC 2.7.7.7 L DNA-damage repair protein (DNA polymerase IV) K00961
NDENIPDB_00683 1.2e-35
NDENIPDB_00684 0.0 purL 6.3.5.3 F CobB/CobQ-like glutamine amidotransferase domain
NDENIPDB_00685 1.2e-137 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
NDENIPDB_00686 9.6e-228 purT 2.1.2.2 F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
NDENIPDB_00687 1.5e-225 M Glycosyl transferase 4-like domain
NDENIPDB_00688 1.5e-197 ltaE 4.1.2.48 E Beta-eliminating lyase
NDENIPDB_00690 1.8e-187 yocS S SBF-like CPA transporter family (DUF4137)
NDENIPDB_00692 1.2e-61 rpsL J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NDENIPDB_00693 3.3e-80 rpsG J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
NDENIPDB_00694 0.0 fusA J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NDENIPDB_00695 9.5e-233 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NDENIPDB_00696 2e-103 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NDENIPDB_00697 1.8e-75 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NDENIPDB_00698 1.1e-239 carA 6.3.5.5 F Belongs to the CarA family
NDENIPDB_00699 0.0 carB 6.3.5.5 EF Carbamoyl-phosphate synthetase large chain, oligomerisation domain
NDENIPDB_00700 3.7e-171 pyrF 2.4.2.10, 4.1.1.23 F Essential for recycling GMP and indirectly, cGMP
NDENIPDB_00701 1.2e-106 gmk 2.7.4.8, 4.1.1.23 F Essential for recycling GMP and indirectly, cGMP
NDENIPDB_00703 0.0 ilvD 4.2.1.9 H Belongs to the IlvD Edd family
NDENIPDB_00704 1.4e-46 rpoZ 2.7.7.6 K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
NDENIPDB_00705 7.9e-227 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NDENIPDB_00706 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NDENIPDB_00707 2.7e-134 3.8.1.2 S Haloacid dehalogenase-like hydrolase
NDENIPDB_00708 1.1e-178 fmt 2.1.1.176, 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NDENIPDB_00709 1.3e-122 serB 3.1.3.3 E haloacid dehalogenase-like hydrolase
NDENIPDB_00710 4.4e-283 arc O AAA ATPase forming ring-shaped complexes
NDENIPDB_00711 3.5e-302 dop 3.5.1.119, 6.3.1.19 S Pup-ligase protein
NDENIPDB_00712 3.3e-160 hisN 3.1.3.25 G Inositol monophosphatase family
NDENIPDB_00713 1.4e-24 pup S Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation
NDENIPDB_00714 2.6e-280 pafA 6.3.1.19 O Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
NDENIPDB_00715 9.7e-141 C FMN binding
NDENIPDB_00716 1.8e-57
NDENIPDB_00717 1.4e-41 hup L Belongs to the bacterial histone-like protein family
NDENIPDB_00718 0.0 S Lysylphosphatidylglycerol synthase TM region
NDENIPDB_00719 1.6e-279 purB 4.3.2.2 F Adenylosuccinate lyase C-terminal
NDENIPDB_00720 1e-276 S PGAP1-like protein
NDENIPDB_00721 1.1e-61
NDENIPDB_00722 1.9e-181 S von Willebrand factor (vWF) type A domain
NDENIPDB_00723 6.1e-191 S von Willebrand factor (vWF) type A domain
NDENIPDB_00724 3.6e-91
NDENIPDB_00725 3.6e-174 S Protein of unknown function DUF58
NDENIPDB_00726 4e-182 moxR S ATPase family associated with various cellular activities (AAA)
NDENIPDB_00727 4.4e-137 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NDENIPDB_00728 1.5e-76 S LytR cell envelope-related transcriptional attenuator
NDENIPDB_00729 8.7e-290 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
NDENIPDB_00731 1.3e-124
NDENIPDB_00732 2.6e-132 KT Response regulator receiver domain protein
NDENIPDB_00733 0.0 2.7.13.3 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
NDENIPDB_00734 4.5e-67 cspB K 'Cold-shock' DNA-binding domain
NDENIPDB_00735 1.2e-182 S Protein of unknown function (DUF3027)
NDENIPDB_00736 4.6e-188 uspA T Belongs to the universal stress protein A family
NDENIPDB_00737 0.0 clpC O ATPase family associated with various cellular activities (AAA)
NDENIPDB_00738 1.5e-255 codA 3.5.4.1, 3.5.4.21 F Amidohydrolase family
NDENIPDB_00739 4.7e-285 purR QT Purine catabolism regulatory protein-like family
NDENIPDB_00740 5e-246 proP EGP Sugar (and other) transporter
NDENIPDB_00741 1.6e-140 3.5.2.10 S Creatinine amidohydrolase
NDENIPDB_00742 1.5e-216 3.1.26.12, 3.2.1.8 S Domain of Unknown Function (DUF349)
NDENIPDB_00743 5.3e-251 hisS 6.1.1.21 J Histidyl-tRNA synthetase
NDENIPDB_00744 0.0 aspS 6.1.1.12 J Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NDENIPDB_00745 7.1e-281 glnP E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00746 6.7e-139 glnQ 3.6.3.21 E ATPases associated with a variety of cellular activities
NDENIPDB_00747 6.2e-137 gluA 3.6.3.21 E ATP-binding protein of ABC transporter for glutamate K02028
NDENIPDB_00748 2.6e-152 gluB ET Belongs to the bacterial solute-binding protein 3 family
NDENIPDB_00749 1.8e-111 gluC E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00750 1e-199 gluD E Binding-protein-dependent transport system inner membrane component
NDENIPDB_00751 4.3e-191 2.7.4.1 S Polyphosphate kinase 2 (PPK2)
NDENIPDB_00752 0.0 L DEAD DEAH box helicase
NDENIPDB_00753 1.2e-250 rarA L Recombination factor protein RarA
NDENIPDB_00754 1.8e-257 EGP Major facilitator Superfamily
NDENIPDB_00755 0.0 E ABC transporter, substrate-binding protein, family 5
NDENIPDB_00756 1e-113 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
NDENIPDB_00757 8.6e-125 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
NDENIPDB_00758 6.1e-241 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NDENIPDB_00761 3.9e-246 nhaA P Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NDENIPDB_00762 2.4e-116 safC S O-methyltransferase
NDENIPDB_00763 5.2e-178 sdhB 1.3.5.1, 1.3.5.4 C 4Fe-4S dicluster domain
NDENIPDB_00764 0.0 sdhA 1.3.5.1, 1.3.5.4 C Succinate dehydrogenase flavoprotein subunit
NDENIPDB_00765 2.7e-255 dprA 5.99.1.2 LU DNA recombination-mediator protein A
NDENIPDB_00766 1e-292 comM O Magnesium chelatase, subunit ChlI C-terminal
NDENIPDB_00767 3.1e-83 yraN L Belongs to the UPF0102 family
NDENIPDB_00768 5.6e-166 pdxK 2.7.1.35 H Phosphomethylpyrimidine kinase
NDENIPDB_00769 5.9e-252 metY 2.5.1.49 E Aminotransferase class-V
NDENIPDB_00770 4.3e-95 XK27_01265 S ECF-type riboflavin transporter, S component
NDENIPDB_00771 1.9e-305 3.6.3.24 P AAA domain, putative AbiEii toxin, Type IV TA system
NDENIPDB_00772 4.5e-149 P Cobalt transport protein
NDENIPDB_00773 9.1e-192 K helix_turn_helix ASNC type
NDENIPDB_00774 5.1e-142 V ABC transporter, ATP-binding protein
NDENIPDB_00775 0.0 MV MacB-like periplasmic core domain
NDENIPDB_00776 1.9e-130 K helix_turn_helix, Lux Regulon
NDENIPDB_00777 0.0 tcsS2 T Histidine kinase
NDENIPDB_00778 5.8e-263 pip 3.4.11.5 S alpha/beta hydrolase fold
NDENIPDB_00779 5.3e-139 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
NDENIPDB_00780 3.9e-201 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
NDENIPDB_00781 3.4e-17 yccF S Inner membrane component domain
NDENIPDB_00782 5.9e-12
NDENIPDB_00783 0.0 cysB 4.2.1.22 EGP Major facilitator Superfamily
NDENIPDB_00784 7e-85 feoB P transporter of a GTP-driven Fe(2 ) uptake system
NDENIPDB_00785 1e-94
NDENIPDB_00786 1.6e-164 MA20_14895 S Conserved hypothetical protein 698
NDENIPDB_00787 1.6e-185 C Na H antiporter family protein
NDENIPDB_00788 1e-157 korD 1.2.7.3 C Domain of unknown function (DUF362)
NDENIPDB_00789 1.4e-78 2.7.1.48 F uridine kinase
NDENIPDB_00790 8.5e-70 S ECF transporter, substrate-specific component
NDENIPDB_00791 1.3e-143 S Sulfite exporter TauE/SafE
NDENIPDB_00792 1.5e-135 K helix_turn_helix, arabinose operon control protein
NDENIPDB_00793 4.9e-156 3.1.3.73 G Phosphoglycerate mutase family
NDENIPDB_00794 2.9e-227 rutG F Permease family
NDENIPDB_00795 2.1e-126 S Enoyl-(Acyl carrier protein) reductase
NDENIPDB_00796 6e-275 deaD 3.6.4.13 JKL helicase superfamily c-terminal domain
NDENIPDB_00797 1.8e-134 ybbM V Uncharacterised protein family (UPF0014)
NDENIPDB_00798 6e-141 ybbL V ATPases associated with a variety of cellular activities
NDENIPDB_00799 7.7e-242 S Putative esterase
NDENIPDB_00800 0.0 lysX S Uncharacterised conserved protein (DUF2156)
NDENIPDB_00801 1.2e-277 gnd 1.1.1.343, 1.1.1.44 H Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
NDENIPDB_00802 1.5e-146 S Belongs to the short-chain dehydrogenases reductases (SDR) family
NDENIPDB_00803 9.4e-219 patB 4.4.1.8 E Aminotransferase, class I II
NDENIPDB_00804 1.8e-303 zwf 1.1.1.363, 1.1.1.49 G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NDENIPDB_00805 2.6e-180 opcA G Glucose-6-phosphate dehydrogenase subunit
NDENIPDB_00806 1.3e-145 pgl 3.1.1.31, 3.5.99.6 G Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
NDENIPDB_00807 3.6e-310 EGP Major Facilitator Superfamily
NDENIPDB_00808 6e-82 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
NDENIPDB_00809 1.1e-86 M Protein of unknown function (DUF3737)
NDENIPDB_00810 3.9e-142 azlC E AzlC protein
NDENIPDB_00811 3.5e-52 azlD E Branched-chain amino acid transport protein (AzlD)
NDENIPDB_00812 0.0 cstA T 5TM C-terminal transporter carbon starvation CstA
NDENIPDB_00813 6.2e-40 ybdD S Selenoprotein, putative
NDENIPDB_00814 2.4e-178 ybbD 3.2.1.52 G Glycosyl hydrolase family 3 N-terminal domain protein
NDENIPDB_00815 0.0 S Uncharacterised protein family (UPF0182)
NDENIPDB_00816 1.1e-92 2.3.1.183 M Acetyltransferase (GNAT) domain
NDENIPDB_00817 1.7e-113 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
NDENIPDB_00818 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NDENIPDB_00819 1.5e-244 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
NDENIPDB_00820 2e-71 divIC D Septum formation initiator
NDENIPDB_00821 2e-103 ppx2 3.6.1.11, 3.6.1.40 S Protein of unknown function (DUF501)
NDENIPDB_00822 1.3e-182 ppx 3.6.1.11, 3.6.1.40 FP Ppx/GppA phosphatase family
NDENIPDB_00824 1.2e-70 P Major Facilitator Superfamily
NDENIPDB_00826 1.5e-90
NDENIPDB_00827 1.9e-283 sdaA 4.3.1.17 E Serine dehydratase alpha chain
NDENIPDB_00828 1.2e-73 fkbP 5.2.1.8 G Peptidyl-prolyl cis-trans
NDENIPDB_00829 2.6e-80 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
NDENIPDB_00830 2e-139 yplQ S Haemolysin-III related
NDENIPDB_00831 6e-277 pdtaS 2.7.13.3 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
NDENIPDB_00832 1.9e-46 whiB K Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
NDENIPDB_00833 0.0 D FtsK/SpoIIIE family
NDENIPDB_00834 4.4e-170 K Cell envelope-related transcriptional attenuator domain
NDENIPDB_00836 4.8e-199 K Cell envelope-related transcriptional attenuator domain
NDENIPDB_00837 3.4e-54 whiB K Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
NDENIPDB_00838 0.0 S Glycosyl transferase, family 2
NDENIPDB_00839 2.5e-222
NDENIPDB_00840 1.5e-71 MA20_43655 2.7.2.8 S Zincin-like metallopeptidase
NDENIPDB_00841 1.1e-152 cof 5.2.1.8 T Eukaryotic phosphomannomutase
NDENIPDB_00842 8.5e-139 ctsW S Phosphoribosyl transferase domain
NDENIPDB_00843 2.6e-187 T ATPase histidine kinase DNA gyrase B HSP90 domain protein
NDENIPDB_00844 2e-129 T Response regulator receiver domain protein
NDENIPDB_00845 0.0 glgB 2.4.1.18 CBM48,GH13 G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDENIPDB_00846 3e-102 carD K CarD-like/TRCF domain
NDENIPDB_00847 7.8e-88 ispF 2.1.1.228, 2.7.7.60, 4.6.1.12 H Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)
NDENIPDB_00848 3.9e-140 znuB U ABC 3 transport family
NDENIPDB_00849 2e-160 znuC P ATPases associated with a variety of cellular activities
NDENIPDB_00850 1.8e-174 P Zinc-uptake complex component A periplasmic
NDENIPDB_00851 7.1e-161 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NDENIPDB_00852 8.3e-255 rpsA J Ribosomal protein S1
NDENIPDB_00853 1.5e-115 coaE 2.7.1.24 H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
NDENIPDB_00854 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
NDENIPDB_00855 5.4e-14 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
NDENIPDB_00856 2.8e-157 terC P Integral membrane protein, TerC family
NDENIPDB_00857 2.5e-305 pyk 2.7.1.40 G Pyruvate kinase
NDENIPDB_00859 6.8e-30 topB 5.99.1.2 L DNA topoisomerase
NDENIPDB_00860 6e-29 topB 5.99.1.2 L DNA topoisomerase
NDENIPDB_00861 1.8e-15
NDENIPDB_00863 2.5e-09 insK L Integrase core domain
NDENIPDB_00864 3.8e-18
NDENIPDB_00865 1.2e-13
NDENIPDB_00866 0.0 L DEAD-like helicases superfamily
NDENIPDB_00867 6.5e-301 L Protein of unknown function (DUF1156)
NDENIPDB_00868 0.0 S Protein of unknown function (DUF499)
NDENIPDB_00869 9.9e-60 GT2,GT4 S Transposase
NDENIPDB_00870 2e-116 L Transposase, Mutator family
NDENIPDB_00872 5.4e-13 IQ Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)
NDENIPDB_00874 4.3e-130
NDENIPDB_00875 3e-145 K Transcriptional regulator
NDENIPDB_00876 1.2e-59 L Phage integrase family
NDENIPDB_00877 1.3e-77 L Phage integrase family
NDENIPDB_00879 2.4e-95 hbd2 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
NDENIPDB_00880 6.7e-67 hbd2 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
NDENIPDB_00881 3.3e-166 yeaD 4.2.1.9, 5.1.3.15 G Aldose 1-epimerase
NDENIPDB_00882 9.4e-101 pdtaR T Response regulator receiver domain protein
NDENIPDB_00883 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NDENIPDB_00884 7.6e-174 yqfO 3.5.4.16 L NIF3 (NGG1p interacting factor 3)
NDENIPDB_00885 1.5e-123 3.6.1.13 L NUDIX domain
NDENIPDB_00886 0.0 glgX 3.2.1.68 CBM48,GH13 G Belongs to the glycosyl hydrolase 13 family
NDENIPDB_00887 2.6e-211 ykiI
NDENIPDB_00889 3.5e-260 aroA 2.5.1.19 E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
NDENIPDB_00890 4.5e-71 yvbK 3.1.3.25 K Acetyltransferase (GNAT) domain
NDENIPDB_00891 7.1e-74 yiaC K Acetyltransferase (GNAT) domain
NDENIPDB_00892 1.5e-302 guaA 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
NDENIPDB_00893 0.0 xfp 4.1.2.22, 4.1.2.9 G D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
NDENIPDB_00894 6e-302 pta 1.1.1.40, 2.3.1.19, 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
NDENIPDB_00895 1.7e-232 ackA 2.7.2.1, 2.7.2.15 H Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NDENIPDB_00896 0.0 yrhL I Psort location CytoplasmicMembrane, score 9.99
NDENIPDB_00897 2.8e-244 pbuX F Permease family
NDENIPDB_00898 1.5e-106 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
NDENIPDB_00899 0.0 pcrA 3.6.4.12 L DNA helicase
NDENIPDB_00900 6.5e-61 S Domain of unknown function (DUF4418)
NDENIPDB_00901 4.8e-216 V FtsX-like permease family
NDENIPDB_00902 5.4e-150 lolD V ABC transporter
NDENIPDB_00903 1.6e-109 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NDENIPDB_00904 3.4e-51 yvlD S Mycobacterial 4 TMS phage holin, superfamily IV
NDENIPDB_00905 5.6e-129 pgm3 G Phosphoglycerate mutase family
NDENIPDB_00906 3.4e-59 WQ51_05790 S Bacterial protein of unknown function (DUF948)
NDENIPDB_00907 2.5e-36
NDENIPDB_00908 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NDENIPDB_00909 2.7e-82 yqgF L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NDENIPDB_00910 4.1e-188 mltG S Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NDENIPDB_00911 9.3e-57 3.4.23.43 S Type IV leader peptidase family
NDENIPDB_00912 2.2e-221 aroC 4.2.3.5 E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
NDENIPDB_00913 0.0 aroK 2.7.1.71, 4.2.3.4 H Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
NDENIPDB_00914 4.9e-81 aroQ 4.2.1.10 E Catalyzes a trans-dehydration via an enolate intermediate
NDENIPDB_00915 0.0 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 M Aamy_C
NDENIPDB_00916 0.0 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
NDENIPDB_00917 0.0 S L,D-transpeptidase catalytic domain
NDENIPDB_00918 1.6e-290 sufB O FeS assembly protein SufB
NDENIPDB_00919 3.9e-234 sufD O FeS assembly protein SufD
NDENIPDB_00920 1e-142 sufC O FeS assembly ATPase SufC
NDENIPDB_00921 9.4e-239 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NDENIPDB_00922 1.7e-96 iscU C SUF system FeS assembly protein, NifU family
NDENIPDB_00923 2.7e-108 yitW S Iron-sulfur cluster assembly protein
NDENIPDB_00924 8.1e-243 glgC 2.7.7.27 H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NDENIPDB_00925 2.6e-163 spoU 2.1.1.185 J SpoU rRNA Methylase family
NDENIPDB_00927 2e-138 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
NDENIPDB_00928 1.8e-56 hinT 2.1.1.226, 2.1.1.227 FG Scavenger mRNA decapping enzyme C-term binding
NDENIPDB_00929 5.9e-208 phoH T PhoH-like protein
NDENIPDB_00930 9.4e-103 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NDENIPDB_00931 1.2e-250 corC S CBS domain
NDENIPDB_00932 2e-180 era S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NDENIPDB_00933 0.0 fadD 6.2.1.3 I AMP-binding enzyme
NDENIPDB_00934 1.7e-202 pntA 1.6.1.2 C NAD(P) transhydrogenase subunit alpha part 1 K00324
NDENIPDB_00935 1.6e-43 pntAA 1.6.1.2 C 4TM region of pyridine nucleotide transhydrogenase, mitoch
NDENIPDB_00936 1.3e-257 pntB 1.6.1.2 C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
NDENIPDB_00937 5.5e-269 S Psort location Cytoplasmic, score 8.87
NDENIPDB_00939 5e-14 V MATE efflux family protein
NDENIPDB_00940 3.9e-224 G Transmembrane secretion effector
NDENIPDB_00941 5.4e-121 K Bacterial regulatory proteins, tetR family
NDENIPDB_00942 1.1e-39 nrdH O Glutaredoxin
NDENIPDB_00943 1.6e-73 nrdI F Probably involved in ribonucleotide reductase function
NDENIPDB_00944 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NDENIPDB_00946 8.2e-190 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NDENIPDB_00947 0.0 uvrA3 L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NDENIPDB_00948 2.6e-30 EGP Major facilitator Superfamily
NDENIPDB_00949 1.3e-25 yhjX EGP Major facilitator Superfamily
NDENIPDB_00950 8.5e-195 S alpha beta
NDENIPDB_00951 1e-89 ctc J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
NDENIPDB_00952 4.8e-93 D Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDENIPDB_00953 3.2e-54 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDENIPDB_00954 7.7e-73 K Acetyltransferase (GNAT) domain
NDENIPDB_00956 1.9e-227 ilvE 2.6.1.42 E Amino-transferase class IV
NDENIPDB_00957 1.1e-133 S UPF0126 domain
NDENIPDB_00958 2.9e-33 rpsT J Binds directly to 16S ribosomal RNA
NDENIPDB_00959 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
NDENIPDB_00960 3e-234 hemN H Involved in the biosynthesis of porphyrin-containing compound
NDENIPDB_00961 5e-145 IQ Oxidoreductase, short chain dehydrogenase reductase family protein
NDENIPDB_00962 1.5e-288 luxC 1.2.1.50 C Acyl-CoA reductase (LuxC)
NDENIPDB_00963 2.1e-218 luxE 6.2.1.19 H long-chain-fatty-acid--luciferin-component ligase, acyl-protein synthase
NDENIPDB_00964 2.5e-234 F Psort location CytoplasmicMembrane, score 10.00
NDENIPDB_00965 0.0 gltB 1.4.1.13, 1.4.1.14, 1.4.7.1 E glutamate synthase NADPH large subunit
NDENIPDB_00966 2.6e-307 gltD 1.4.1.13, 1.4.1.14 C Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
NDENIPDB_00967 2e-74
NDENIPDB_00968 2.2e-248 glgA 2.4.1.342 GT4 G Starch synthase catalytic domain
NDENIPDB_00969 1.9e-158 modF 3.6.3.21, 3.6.3.34 P ATPases associated with a variety of cellular activities
NDENIPDB_00970 1.8e-198 trmI 2.1.1.219, 2.1.1.220 J Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
NDENIPDB_00971 4.5e-100 sixA 3.6.1.55 T Phosphoglycerate mutase family
NDENIPDB_00972 0.0 metE 2.1.1.14 E Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NDENIPDB_00973 1.6e-157 metF 1.5.1.20 E Methylenetetrahydrofolate reductase
NDENIPDB_00974 0.0 glnE 2.7.7.42, 2.7.7.89 H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell
NDENIPDB_00975 3e-187 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
NDENIPDB_00976 4.2e-74 pyrI 2.1.3.2 F Aspartate carbamoyltransferase regulatory chain, allosteric domain protein
NDENIPDB_00977 5.2e-278 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
NDENIPDB_00978 7e-178 pyrF 2.4.2.10, 4.1.1.23 F Belongs to the OMP decarboxylase family. Type 2 subfamily
NDENIPDB_00979 1.6e-154 pyrK 1.18.1.2, 1.19.1.1, 1.4.1.13, 1.4.1.14 C Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
NDENIPDB_00980 6.6e-179 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
NDENIPDB_00981 5.5e-124 pyrE 2.4.2.10 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NDENIPDB_00982 2.9e-162 cpsY K Bacterial regulatory helix-turn-helix protein, lysR family
NDENIPDB_00983 0.0 thiC 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NDENIPDB_00984 8.8e-109 J Acetyltransferase (GNAT) domain
NDENIPDB_00985 6.1e-69 arsC 1.20.4.1 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDENIPDB_00986 5.1e-220 yxjG_1 E Psort location Cytoplasmic, score 8.87
NDENIPDB_00987 6.1e-122 maa 2.3.1.18, 2.3.1.79 S Maltose acetyltransferase
NDENIPDB_00988 1.8e-50 sdpR K helix_turn_helix, Arsenical Resistance Operon Repressor
NDENIPDB_00989 1.4e-139 S SdpI/YhfL protein family
NDENIPDB_00990 1e-108 3.8.1.2 S Haloacid dehalogenase-like hydrolase
NDENIPDB_00991 0.0 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NDENIPDB_00992 5e-125 XK27_06785 V ABC transporter
NDENIPDB_00995 4.3e-63
NDENIPDB_00996 3.3e-96 M Peptidase family M23
NDENIPDB_00997 2e-112 fadD1 6.2.1.3 I AMP-binding enzyme
NDENIPDB_00998 7.8e-227 fadD1 6.2.1.3 I AMP-binding enzyme
NDENIPDB_00999 4.9e-266 G ABC transporter substrate-binding protein
NDENIPDB_01000 5.3e-231 icd 1.1.1.42 C Belongs to the isocitrate and isopropylmalate dehydrogenases family
NDENIPDB_01001 1.1e-209 guaB 1.1.1.205 F IMP dehydrogenase family protein
NDENIPDB_01002 6.1e-108 dnaQ 2.7.7.7 L Exonuclease, DNA polymerase III, epsilon subunit family
NDENIPDB_01003 9e-72 U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
NDENIPDB_01004 2.9e-241 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NDENIPDB_01005 3.6e-67 rsfS 2.7.7.18 J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
NDENIPDB_01006 2.5e-143 3.1.3.85, 5.4.2.11, 5.4.2.12 G Phosphoglycerate mutase family
NDENIPDB_01007 1.5e-115
NDENIPDB_01009 9.4e-231 XK27_00240 K Fic/DOC family
NDENIPDB_01010 2.7e-70 pdxH S Pfam:Pyridox_oxidase
NDENIPDB_01011 3.9e-301 M domain protein
NDENIPDB_01012 5.6e-83 3.4.22.70 M Sortase family
NDENIPDB_01013 1.5e-64 3.4.22.70 M Sortase family
NDENIPDB_01014 1.5e-163 3.1.3.85, 5.4.2.11, 5.4.2.12 G Phosphoglycerate mutase family
NDENIPDB_01015 5.7e-172 corA P CorA-like Mg2+ transporter protein
NDENIPDB_01016 6.2e-141 ET Bacterial periplasmic substrate-binding proteins
NDENIPDB_01017 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
NDENIPDB_01018 3.4e-85 comEA 2.4.1.21 GT5 L Helix-hairpin-helix motif
NDENIPDB_01019 0.0 comE S Competence protein
NDENIPDB_01020 6.5e-179 holA 2.7.7.7 L DNA polymerase III delta subunit
NDENIPDB_01021 9.2e-94 ydiB 2.7.1.221, 5.1.1.1 S Threonylcarbamoyl adenosine biosynthesis protein TsaE
NDENIPDB_01022 1.3e-148 yeaZ 2.3.1.234 O Glycoprotease family
NDENIPDB_01023 8.6e-85 rimI 2.3.1.128, 2.3.1.234 K FR47-like protein
NDENIPDB_01024 2.6e-194 tsaD 2.3.1.234 O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NDENIPDB_01026 2.6e-119 yoaP E YoaP-like
NDENIPDB_01027 1.3e-184 cbh 3.5.1.24 M Linear amide C-N hydrolase, choloylglycine hydrolase family protein
NDENIPDB_01028 1.5e-118 ykoE S ABC-type cobalt transport system, permease component
NDENIPDB_01029 6.7e-72 K MerR family regulatory protein
NDENIPDB_01030 1.1e-197 adhB 1.1.1.1, 1.1.1.14 C Zinc-binding dehydrogenase
NDENIPDB_01031 2.4e-144 4.1.1.44 S Carboxymuconolactone decarboxylase family
NDENIPDB_01032 6e-221 yxjG_1 E Psort location Cytoplasmic, score 8.87
NDENIPDB_01033 3.6e-76 S Psort location CytoplasmicMembrane, score
NDENIPDB_01034 1e-182 cat P Cation efflux family
NDENIPDB_01037 7.8e-94
NDENIPDB_01038 1.9e-26
NDENIPDB_01039 4.8e-58
NDENIPDB_01040 2e-143 mazG 3.6.1.66 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01041 1.2e-279 pepC 3.4.22.40 E Peptidase C1-like family
NDENIPDB_01042 3.5e-164 S IMP dehydrogenase activity
NDENIPDB_01043 2.7e-299 ybiT S ABC transporter
NDENIPDB_01044 4.7e-111 pncA 2.7.11.1, 3.5.1.19 Q Isochorismatase family
NDENIPDB_01045 2.8e-66 ogt 2.1.1.63 L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NDENIPDB_01047 2e-13
NDENIPDB_01048 6.4e-272 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01049 1.4e-139 S Domain of unknown function (DUF4194)
NDENIPDB_01050 0.0 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01051 3.2e-220 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01052 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
NDENIPDB_01053 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
NDENIPDB_01054 7.1e-183 aroE 1.1.1.25 E Shikimate dehydrogenase substrate binding domain
NDENIPDB_01055 4e-170 rapZ S Displays ATPase and GTPase activities
NDENIPDB_01056 2.8e-171 whiA K May be required for sporulation
NDENIPDB_01057 1.9e-220 pgk 2.7.2.3, 5.3.1.1 F Phosphoglycerate kinase
NDENIPDB_01058 9.6e-149 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
NDENIPDB_01059 2.4e-32 secG U Preprotein translocase SecG subunit
NDENIPDB_01060 2.6e-177 S Sucrose-6F-phosphate phosphohydrolase
NDENIPDB_01061 8e-301 alaA 2.6.1.2, 2.6.1.66 E Aminotransferase, class I II
NDENIPDB_01062 1.2e-08 pnuC H Nicotinamide mononucleotide transporter
NDENIPDB_01063 4.4e-29 pnuC H Nicotinamide mononucleotide transporter
NDENIPDB_01064 2.7e-67 pnuC H Nicotinamide mononucleotide transporter
NDENIPDB_01065 2.5e-49 nadD 2.7.1.22, 2.7.7.1, 2.7.7.18, 3.6.1.55 H ATPase kinase involved in NAD metabolism
NDENIPDB_01066 2.2e-41 nadR H ATPase kinase involved in NAD metabolism
NDENIPDB_01067 4.2e-203 tal 2.2.1.2 H Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NDENIPDB_01068 0.0 tkt 2.2.1.1 H Belongs to the transketolase family
NDENIPDB_01069 1e-196 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
NDENIPDB_01070 2.4e-188 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
NDENIPDB_01071 5.1e-158 G Fructosamine kinase
NDENIPDB_01072 6.9e-156 uppP 3.6.1.27 V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
NDENIPDB_01073 2.8e-156 S PAC2 family
NDENIPDB_01080 5.4e-36
NDENIPDB_01081 4.7e-76 garA T Inner membrane component of T3SS, cytoplasmic domain
NDENIPDB_01082 9.7e-112 K helix_turn_helix, mercury resistance
NDENIPDB_01083 4.6e-61
NDENIPDB_01084 7.4e-140 pgp 3.1.3.18 S HAD-hyrolase-like
NDENIPDB_01085 3.9e-62 rbpA K Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters
NDENIPDB_01086 0.0 helY L DEAD DEAH box helicase
NDENIPDB_01087 2.1e-54
NDENIPDB_01088 0.0 pafB K WYL domain
NDENIPDB_01089 3.7e-265 ugpA 2.7.7.9 G UTP-glucose-1-phosphate uridylyltransferase
NDENIPDB_01091 1.1e-69
NDENIPDB_01092 0.0 der 1.1.1.399, 1.1.1.95, 2.7.4.25 F GTPase that plays an essential role in the late steps of ribosome biogenesis
NDENIPDB_01093 9.1e-144 rluB 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
NDENIPDB_01094 5.8e-161 glpF U Belongs to the MIP aquaporin (TC 1.A.8) family
NDENIPDB_01095 8.2e-34
NDENIPDB_01096 0.0 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
NDENIPDB_01097 1.8e-246
NDENIPDB_01098 3.7e-160 sucD 6.2.1.5 C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
NDENIPDB_01099 2.2e-221 sucC 6.2.1.5 F Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
NDENIPDB_01100 1.8e-99 apt 2.4.2.22, 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NDENIPDB_01101 1.8e-50 yajC U Preprotein translocase subunit
NDENIPDB_01102 1.6e-199 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
NDENIPDB_01103 1e-105 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
NDENIPDB_01104 1e-99 ruvC 3.1.22.4 L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NDENIPDB_01105 5.2e-128 yebC K transcriptional regulatory protein
NDENIPDB_01106 3.5e-112 pgsA1 2.7.8.11, 2.7.8.5 I CDP-alcohol phosphatidyltransferase
NDENIPDB_01107 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
NDENIPDB_01108 1.6e-141 S Bacterial protein of unknown function (DUF881)
NDENIPDB_01109 4.2e-45 sbp S Protein of unknown function (DUF1290)
NDENIPDB_01110 9.9e-172 S Bacterial protein of unknown function (DUF881)
NDENIPDB_01111 1e-102 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NDENIPDB_01112 1.1e-155 hisG 2.4.2.17 F ATP phosphoribosyltransferase
NDENIPDB_01113 1.9e-40 hisE 3.5.4.19, 3.6.1.31, 5.3.1.16 E Phosphoribosyl-ATP pyrophosphohydrolase
NDENIPDB_01114 4.2e-97 rpe 5.1.3.1 G Ribulose-phosphate 3-epimerase
NDENIPDB_01115 4.6e-180 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NDENIPDB_01116 2.6e-163 trpA 4.2.1.20 E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
NDENIPDB_01117 0.0 trpB 4.1.1.48, 4.2.1.20 E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
NDENIPDB_01118 7.1e-297 trpE 4.1.3.27 E Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NDENIPDB_01119 2.9e-72 hisI 3.5.4.19, 3.6.1.31 E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NDENIPDB_01120 3e-139 hisF 4.1.3.27 E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
NDENIPDB_01121 9.4e-225 rlmN 2.1.1.192 J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
NDENIPDB_01122 6.1e-177 cdsA 2.7.7.41, 2.7.7.67 I Cytidylyltransferase family
NDENIPDB_01123 5.8e-92 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
NDENIPDB_01124 2.6e-135 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
NDENIPDB_01126 5e-143 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NDENIPDB_01127 1.9e-139 rpsB J Belongs to the universal ribosomal protein uS2 family
NDENIPDB_01128 1.1e-83 def 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
NDENIPDB_01129 0.0 fadD3 6.2.1.3 I long-chain-fatty acid CoA ligase
NDENIPDB_01130 3.1e-121
NDENIPDB_01132 5e-190 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDENIPDB_01133 1.8e-141 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NDENIPDB_01134 3.2e-101
NDENIPDB_01135 2.9e-243 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NDENIPDB_01136 6.5e-251 glyA 2.1.2.1 E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NDENIPDB_01137 2.3e-284 thrC 4.2.3.1 E Threonine synthase N terminus
NDENIPDB_01138 4.6e-233 EGP Major facilitator Superfamily
NDENIPDB_01139 9.7e-76 3.1.3.27 E haloacid dehalogenase-like hydrolase
NDENIPDB_01140 4.3e-174 G Fic/DOC family
NDENIPDB_01141 7.7e-142
NDENIPDB_01142 9.1e-164 IQ Enoyl-(Acyl carrier protein) reductase
NDENIPDB_01143 1.4e-167 S Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDENIPDB_01144 7.4e-77 3.4.13.22 S Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDENIPDB_01145 1.1e-95 bcp 1.11.1.15 O Redoxin
NDENIPDB_01146 1.9e-25 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01147 7.4e-95 S Pyridoxamine 5'-phosphate oxidase
NDENIPDB_01148 0.0 S Histidine phosphatase superfamily (branch 2)
NDENIPDB_01149 7.9e-44 L transposition
NDENIPDB_01150 1.1e-23 C Acetamidase/Formamidase family
NDENIPDB_01151 1.7e-58 K helix_turn_helix gluconate operon transcriptional repressor
NDENIPDB_01152 8.6e-173 V ATPases associated with a variety of cellular activities
NDENIPDB_01153 4.1e-122 S ABC-2 family transporter protein
NDENIPDB_01154 2.4e-121 S Haloacid dehalogenase-like hydrolase
NDENIPDB_01155 6.2e-262 recN L May be involved in recombinational repair of damaged DNA
NDENIPDB_01156 2e-177 nadK 2.7.1.23 H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NDENIPDB_01157 2e-264 trkB P Cation transport protein
NDENIPDB_01158 2.3e-116 trkA P TrkA-N domain
NDENIPDB_01159 6.4e-134 tlyA 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
NDENIPDB_01160 2.2e-190 yutF 3.1.3.41 G Haloacid dehalogenase-like hydrolase
NDENIPDB_01161 1.5e-149 L Tetratricopeptide repeat
NDENIPDB_01162 5e-251 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NDENIPDB_01163 0.0 S Protein of unknown function (DUF975)
NDENIPDB_01164 8.8e-134 S Putative ABC-transporter type IV
NDENIPDB_01165 1.1e-92 6.1.1.14 S Metal dependent phosphohydrolases with conserved 'HD' motif.
NDENIPDB_01166 1.3e-279 argH 4.3.2.1 E argininosuccinate lyase
NDENIPDB_01167 4.6e-238 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
NDENIPDB_01168 1.9e-84 argR K Regulates arginine biosynthesis genes
NDENIPDB_01169 7.1e-186 argF 2.1.3.3 E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NDENIPDB_01170 1e-240 argD 2.6.1.11, 2.6.1.17 E Aminotransferase class-III
NDENIPDB_01171 1.1e-178 argB 2.7.2.8 E Belongs to the acetylglutamate kinase family. ArgB subfamily
NDENIPDB_01172 8.8e-215 argJ 2.3.1.1, 2.3.1.35, 2.7.2.8 E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
NDENIPDB_01173 5e-204 argC 1.2.1.38 E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NDENIPDB_01174 3.5e-97
NDENIPDB_01175 0.0 pheT 6.1.1.20 J Phenylalanyl-tRNA synthetase beta
NDENIPDB_01176 2.4e-203 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
NDENIPDB_01178 5e-96 yvdD 3.2.2.10 S Possible lysine decarboxylase
NDENIPDB_01180 4.5e-18
NDENIPDB_01182 1.5e-17 L HNH endonuclease
NDENIPDB_01183 2.2e-113 ung2 3.2.2.27 L Uracil DNA glycosylase superfamily
NDENIPDB_01184 2e-41 V DNA modification
NDENIPDB_01185 7.8e-282 glnA 6.3.1.2 E glutamine synthetase
NDENIPDB_01186 2.3e-142 S Domain of unknown function (DUF4191)
NDENIPDB_01187 2.4e-246 lpdA 1.16.1.1, 1.8.1.4 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDENIPDB_01188 3.6e-93 S Protein of unknown function (DUF3043)
NDENIPDB_01189 1.9e-253 argE E Peptidase dimerisation domain
NDENIPDB_01190 1.4e-145 cbiQ P Cobalt transport protein
NDENIPDB_01191 1.8e-265 ykoD P ATPases associated with a variety of cellular activities
NDENIPDB_01192 2.2e-84 ykoE S ABC-type cobalt transport system, permease component
NDENIPDB_01193 4.8e-202 mrp D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP
NDENIPDB_01194 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NDENIPDB_01195 0.0 S Tetratricopeptide repeat
NDENIPDB_01196 0.0 M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
NDENIPDB_01197 1.2e-305 2.8.2.22 S Arylsulfotransferase Ig-like domain
NDENIPDB_01198 1.9e-144 bioM P ATPases associated with a variety of cellular activities
NDENIPDB_01199 8.1e-221 E Aminotransferase class I and II
NDENIPDB_01200 2.7e-140 ppgK 2.7.1.2, 2.7.1.63 GK ROK family
NDENIPDB_01201 2.2e-201 S Glycosyltransferase, group 2 family protein
NDENIPDB_01202 1.8e-144 tenA 3.5.99.2 K Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NDENIPDB_01203 2.4e-47 yhbY J CRS1_YhbY
NDENIPDB_01204 0.0 ecfA GP ABC transporter, ATP-binding protein
NDENIPDB_01205 6.1e-109 ribU U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
NDENIPDB_01206 0.0 snf 2.7.11.1 KL Psort location Cytoplasmic, score 8.87
NDENIPDB_01207 7.4e-38 pepC 3.4.22.40 E homocysteine catabolic process
NDENIPDB_01208 1.3e-107 kcsA U Ion channel
NDENIPDB_01209 3.8e-187 ghrA EH D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NDENIPDB_01210 6.6e-84 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
NDENIPDB_01211 1.2e-123 3.2.1.8 S alpha beta
NDENIPDB_01212 4.3e-25
NDENIPDB_01213 3.9e-269 L Uncharacterized conserved protein (DUF2075)
NDENIPDB_01214 2.5e-14 mazG S MazG-like family
NDENIPDB_01215 4.9e-50 S Putative inner membrane protein (DUF1819)
NDENIPDB_01216 8e-12 S Putative inner membrane protein (DUF1819)
NDENIPDB_01217 1.1e-130 K Helix-turn-helix domain protein
NDENIPDB_01219 2.3e-10
NDENIPDB_01220 2.7e-21
NDENIPDB_01221 2.9e-171
NDENIPDB_01222 7e-149 S phosphoesterase or phosphohydrolase
NDENIPDB_01223 7.5e-43 ghrA EH D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
NDENIPDB_01224 1.4e-71 4.1.1.44 S Cupin domain
NDENIPDB_01225 2.3e-166 C Aldo/keto reductase family
NDENIPDB_01226 3.2e-127 E Psort location Cytoplasmic, score 8.87
NDENIPDB_01227 2.7e-132 yebE S DUF218 domain
NDENIPDB_01228 1.2e-231 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
NDENIPDB_01229 2.6e-236 rnd 3.1.13.5 J 3'-5' exonuclease
NDENIPDB_01230 9.9e-80 S Protein of unknown function (DUF3000)
NDENIPDB_01231 7.4e-166 pflA 1.97.1.4 C Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NDENIPDB_01232 0.0 pflB 2.3.1.54 C Pyruvate formate lyase-like
NDENIPDB_01233 4.5e-31
NDENIPDB_01234 0.0 nadE 6.3.1.5, 6.3.5.1 H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDENIPDB_01235 1.2e-211 S Peptidase dimerisation domain
NDENIPDB_01236 1.3e-93 metI P Binding-protein-dependent transport system inner membrane component
NDENIPDB_01237 2.5e-174 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NDENIPDB_01238 3.7e-150 metQ P NLPA lipoprotein
NDENIPDB_01240 5.1e-113 S Sucrose-6F-phosphate phosphohydrolase
NDENIPDB_01241 3.1e-310 S LPXTG-motif cell wall anchor domain protein
NDENIPDB_01242 7.3e-245 dinF V MatE
NDENIPDB_01243 1.2e-102 ppiA 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NDENIPDB_01244 0.0 relA 2.7.6.5, 3.1.7.2 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDENIPDB_01245 1.3e-84 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
NDENIPDB_01246 1e-47 S Domain of unknown function (DUF4193)
NDENIPDB_01247 4.1e-147 S Protein of unknown function (DUF3071)
NDENIPDB_01248 3e-234 S Type I phosphodiesterase / nucleotide pyrophosphatase
NDENIPDB_01249 0.0 gyrA 5.99.1.3 L DNA topoisomerase (ATP-hydrolyzing)
NDENIPDB_01250 0.0 lhr L DEAD DEAH box helicase
NDENIPDB_01251 5.8e-32 yozG K Cro/C1-type HTH DNA-binding domain
NDENIPDB_01252 2.4e-79 S Protein of unknown function (DUF2975)
NDENIPDB_01253 7.3e-242 T PhoQ Sensor
NDENIPDB_01254 1.5e-222 G Major Facilitator Superfamily
NDENIPDB_01255 0.0 gyrB2 5.99.1.3 L DNA topoisomerase (ATP-hydrolyzing)
NDENIPDB_01256 9.7e-173 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
NDENIPDB_01257 1.1e-118
NDENIPDB_01258 2.2e-196 crtE 2.5.1.1, 2.5.1.10, 2.5.1.29 H Belongs to the FPP GGPP synthase family
NDENIPDB_01259 0.0 pknL 2.7.11.1 KLT PASTA
NDENIPDB_01260 1.9e-132 plsC2 2.3.1.51 I Phosphate acyltransferases
NDENIPDB_01261 1.3e-97
NDENIPDB_01262 3.4e-194 trpD 2.4.2.18, 4.1.3.27 F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NDENIPDB_01263 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
NDENIPDB_01264 3.3e-118 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NDENIPDB_01265 1.7e-122 recX S Modulates RecA activity
NDENIPDB_01266 5.4e-212 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NDENIPDB_01267 4.3e-46 S Protein of unknown function (DUF3046)
NDENIPDB_01268 4.7e-80 K Helix-turn-helix XRE-family like proteins
NDENIPDB_01269 5.5e-98 cinA 3.5.1.42 S Belongs to the CinA family
NDENIPDB_01270 9.2e-124 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NDENIPDB_01271 0.0 ftsK D FtsK SpoIIIE family protein
NDENIPDB_01272 4.2e-192 miaA 2.5.1.75 F Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NDENIPDB_01273 1e-281 miaB 2.8.4.3 H Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NDENIPDB_01274 3.2e-155 relA2 2.7.6.5 S Region found in RelA / SpoT proteins
NDENIPDB_01275 5.2e-176 ydeD EG EamA-like transporter family
NDENIPDB_01276 1.7e-127 ybhL S Belongs to the BI1 family
NDENIPDB_01277 1.4e-57 S Domain of unknown function (DUF5067)
NDENIPDB_01278 1.1e-242 T Histidine kinase
NDENIPDB_01279 4.1e-127 K helix_turn_helix, Lux Regulon
NDENIPDB_01280 0.0 S Protein of unknown function DUF262
NDENIPDB_01281 9e-116 K helix_turn_helix, Lux Regulon
NDENIPDB_01282 1.9e-245 T Histidine kinase
NDENIPDB_01283 4.4e-191 V ATPases associated with a variety of cellular activities
NDENIPDB_01284 7.7e-225 V ABC-2 family transporter protein
NDENIPDB_01285 8.9e-229 V ABC-2 family transporter protein
NDENIPDB_01286 9.8e-213 rhaR1 K helix_turn_helix, arabinose operon control protein
NDENIPDB_01287 4.7e-109 maa 2.3.1.18, 2.3.1.79 S Bacterial transferase hexapeptide repeat protein
NDENIPDB_01288 1.3e-249 VP1224 V Psort location CytoplasmicMembrane, score 9.99
NDENIPDB_01289 0.0 acnA 4.2.1.3 C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
NDENIPDB_01290 0.0 ctpE P E1-E2 ATPase
NDENIPDB_01291 2e-74
NDENIPDB_01292 2.8e-243 trmA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NDENIPDB_01293 2.4e-133 S Protein of unknown function (DUF3159)
NDENIPDB_01294 1.7e-151 S Protein of unknown function (DUF3710)
NDENIPDB_01295 3e-172 exoA 3.1.11.2 L Endonuclease/Exonuclease/phosphatase family
NDENIPDB_01296 0.0 dppD EP Oligopeptide/dipeptide transporter, C-terminal region
NDENIPDB_01297 4.1e-170 dppC EP N-terminal TM domain of oligopeptide transport permease C
NDENIPDB_01298 1.6e-155 dppB EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_01299 0.0 E ABC transporter, substrate-binding protein, family 5
NDENIPDB_01300 0.0 E ABC transporter, substrate-binding protein, family 5
NDENIPDB_01301 1.6e-171 xerC D Belongs to the 'phage' integrase family. XerC subfamily
NDENIPDB_01302 5.2e-08
NDENIPDB_01303 2.8e-34
NDENIPDB_01304 8.9e-195 tyrA 1.3.1.12, 1.3.1.43 E Prephenate dehydrogenase
NDENIPDB_01305 3.7e-190 pheA 1.3.1.12, 4.2.1.51, 5.4.99.5 E Prephenate dehydratase
NDENIPDB_01306 1.2e-103
NDENIPDB_01307 0.0 typA T Elongation factor G C-terminus
NDENIPDB_01308 1.7e-249 naiP U Sugar (and other) transporter
NDENIPDB_01309 2.1e-151 nrtR 3.6.1.55 F NUDIX hydrolase
NDENIPDB_01310 6.8e-153 soj D CobQ CobB MinD ParA nucleotide binding domain protein
NDENIPDB_01311 2e-177 xerD D recombinase XerD
NDENIPDB_01312 9.6e-62 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
NDENIPDB_01313 2.1e-25 rpmI J Ribosomal protein L35
NDENIPDB_01314 1.6e-103 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
NDENIPDB_01315 4.9e-110 2.7.6.2 H Thiamin pyrophosphokinase, vitamin B1 binding domain
NDENIPDB_01316 1.8e-198 gap 1.2.1.12 G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
NDENIPDB_01317 2.1e-88 ybaK J Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NDENIPDB_01318 7.9e-172 ispH 1.17.7.4, 2.7.4.25 IM Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NDENIPDB_01319 4.3e-188 galM 5.1.3.3 G Aldose 1-epimerase
NDENIPDB_01320 1.2e-36
NDENIPDB_01321 1.7e-97 sigH K Belongs to the sigma-70 factor family. ECF subfamily
NDENIPDB_01322 4.6e-280 murE 6.3.2.13, 6.3.2.7 M Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDENIPDB_01323 5e-187 V Acetyltransferase (GNAT) domain
NDENIPDB_01324 1.9e-289 folC 6.3.2.12, 6.3.2.17 H Mur ligase middle domain
NDENIPDB_01325 0.0 pepP 3.4.11.9 E Aminopeptidase P, N-terminal domain
NDENIPDB_01326 2.6e-94 3.6.1.55 F NUDIX domain
NDENIPDB_01327 0.0 P Belongs to the ABC transporter superfamily
NDENIPDB_01328 4.7e-192 dppC EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_01329 3.8e-188 dppB EP Binding-protein-dependent transport system inner membrane component
NDENIPDB_01330 4.7e-307 ddpA E Bacterial extracellular solute-binding proteins, family 5 Middle
NDENIPDB_01331 1.7e-218 GK ROK family
NDENIPDB_01332 1.1e-164 2.7.1.4 G pfkB family carbohydrate kinase
NDENIPDB_01333 1.7e-219 S Metal-independent alpha-mannosidase (GH125)
NDENIPDB_01334 1.6e-27
NDENIPDB_01335 7.1e-247 yihS 5.1.3.11 G N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
NDENIPDB_01336 1e-140 ftsQ 6.3.2.4 D Cell division protein FtsQ
NDENIPDB_01337 2.3e-271 murC 6.3.2.8 M Belongs to the MurCDEF family
NDENIPDB_01338 6.3e-216 murG 2.4.1.227, 6.3.2.8 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NDENIPDB_01339 8.1e-203 ftsW 2.4.1.227 GT28 D Belongs to the SEDS family
NDENIPDB_01340 9.6e-256 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
NDENIPDB_01341 8.8e-193 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NDENIPDB_01342 6.4e-263 murF 6.3.2.10 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
NDENIPDB_01343 1.1e-153 yqeC 6.3.2.10, 6.3.2.13 M Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDENIPDB_01344 0.0 ftsI 3.4.16.4 M Penicillin-binding protein, transpeptidase domain protein
NDENIPDB_01345 1.8e-62 ftsL D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NDENIPDB_01346 1.3e-190 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
NDENIPDB_01347 1.6e-91 mraZ K Belongs to the MraZ family
NDENIPDB_01348 0.0 L DNA helicase
NDENIPDB_01349 8.7e-218 serA 1.1.1.399, 1.1.1.95 EH D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
NDENIPDB_01350 2.9e-84 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NDENIPDB_01351 1e-53 M Lysin motif
NDENIPDB_01352 2.2e-131 lexA 3.4.21.88 K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NDENIPDB_01353 1.3e-149 czcD P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
NDENIPDB_01354 2.3e-176 ldh 1.1.1.27, 1.1.1.37 C Belongs to the LDH MDH superfamily. LDH family
NDENIPDB_01355 1.1e-270 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NDENIPDB_01356 1.1e-112 rsmC 2.1.1.172 J Ribosomal protein L11 methyltransferase (PrmA)
NDENIPDB_01357 0.0 hrpA 3.6.4.13 L Helicase associated domain (HA2) Add an annotation
NDENIPDB_01358 3.4e-173
NDENIPDB_01359 3.2e-156 V N-Acetylmuramoyl-L-alanine amidase
NDENIPDB_01360 3.1e-90
NDENIPDB_01361 1.9e-118 ytrE V ATPases associated with a variety of cellular activities
NDENIPDB_01362 4e-218 EGP Major facilitator Superfamily
NDENIPDB_01363 9.8e-161 M Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
NDENIPDB_01364 6.9e-217 S Domain of unknown function (DUF5067)
NDENIPDB_01365 2e-263 glnA2 6.3.1.2 E glutamine synthetase
NDENIPDB_01366 1.4e-130 hisA 5.3.1.16, 5.3.1.24 E Histidine biosynthesis protein
NDENIPDB_01367 4.1e-121 hisH E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NDENIPDB_01368 1.9e-120
NDENIPDB_01369 1.9e-109 hisB 1.1.1.23, 2.6.1.9, 3.1.3.15, 4.2.1.19 E Imidazoleglycerol-phosphate dehydratase
NDENIPDB_01370 2.5e-225 hisC 2.6.1.9 E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NDENIPDB_01371 1e-257 hisD 1.1.1.23, 1.1.1.308 E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NDENIPDB_01372 0.0 dnaE 2.7.7.7 L DNA polymerase III alpha subunit
NDENIPDB_01373 1.4e-175 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
NDENIPDB_01374 4.3e-87 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NDENIPDB_01375 1.3e-30 3.1.21.3 V DivIVA protein
NDENIPDB_01376 6.9e-41 yggT S YGGT family
NDENIPDB_01377 8.9e-81 sepF D Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
NDENIPDB_01378 5.6e-220 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NDENIPDB_01379 2.5e-244 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NDENIPDB_01380 1.3e-295 glyQS 6.1.1.14 J Catalyzes the attachment of glycine to tRNA(Gly)
NDENIPDB_01381 1e-105 S Pilus assembly protein, PilO
NDENIPDB_01382 8.1e-166 pilN NU PFAM Fimbrial assembly family protein
NDENIPDB_01383 1.1e-189 pilM NU Type IV pilus assembly protein PilM;
NDENIPDB_01384 1.5e-149 pilD 3.4.23.43 NOU Bacterial Peptidase A24 N-terminal domain
NDENIPDB_01385 0.0
NDENIPDB_01386 1.2e-230 pilC U Type II secretion system (T2SS), protein F
NDENIPDB_01387 1.8e-40 pilA NU Prokaryotic N-terminal methylation motif
NDENIPDB_01388 1.6e-104 S Prokaryotic N-terminal methylation motif
NDENIPDB_01389 4.9e-137 ppdC NU Prokaryotic N-terminal methylation motif
NDENIPDB_01390 0.0 pulE NU Type II/IV secretion system protein
NDENIPDB_01391 0.0 pilT NU Type II/IV secretion system protein
NDENIPDB_01392 0.0
NDENIPDB_01393 9.9e-155 thiM 2.7.1.50 H Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
NDENIPDB_01394 2.4e-133 thiE 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
NDENIPDB_01395 2.4e-150 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
NDENIPDB_01396 3e-60 S Thiamine-binding protein
NDENIPDB_01397 2.4e-192 K helix_turn _helix lactose operon repressor
NDENIPDB_01398 2.8e-241 lacY P LacY proton/sugar symporter
NDENIPDB_01399 0.0 cscA 3.2.1.26 GH32 G Belongs to the glycosyl hydrolase 32 family
NDENIPDB_01400 1.4e-142 ytlD1 2.7.1.50 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_01401 7e-206 P NMT1/THI5 like
NDENIPDB_01402 2.7e-217 iunH1 3.2.2.1 F nucleoside hydrolase
NDENIPDB_01403 4e-155 uppS 2.5.1.31, 2.5.1.86, 2.5.1.88 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NDENIPDB_01404 7.3e-135 recO L Involved in DNA repair and RecF pathway recombination
NDENIPDB_01405 0.0 I acetylesterase activity
NDENIPDB_01406 5.6e-225 ispG 1.17.7.1, 1.17.7.3 I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
NDENIPDB_01407 7.2e-217 dxr 1.1.1.267 I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)
NDENIPDB_01408 4.2e-203 2.7.11.1 NU Tfp pilus assembly protein FimV
NDENIPDB_01410 6.5e-75 S Protein of unknown function (DUF3052)
NDENIPDB_01411 1.3e-154 lon T Belongs to the peptidase S16 family
NDENIPDB_01412 9.1e-284 S Zincin-like metallopeptidase
NDENIPDB_01413 3.6e-282 uvrD2 3.6.4.12 L DNA helicase
NDENIPDB_01414 1.8e-268 mphA S Aminoglycoside phosphotransferase
NDENIPDB_01415 3.6e-32 S Protein of unknown function (DUF3107)
NDENIPDB_01416 1.9e-172 PPA1328 3.1.3.97 S DNA polymerase alpha chain like domain
NDENIPDB_01417 4.8e-117 S Vitamin K epoxide reductase
NDENIPDB_01418 2.3e-170 dapF 5.1.1.7 E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine
NDENIPDB_01419 1.8e-144 murI 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
NDENIPDB_01420 2.1e-21 S lipid catabolic process
NDENIPDB_01421 4.3e-300 E ABC transporter, substrate-binding protein, family 5
NDENIPDB_01422 4.9e-176 iaaA 3.4.19.5, 3.5.1.1 E Asparaginase
NDENIPDB_01423 1.5e-160 S Patatin-like phospholipase
NDENIPDB_01424 4.8e-185 K LysR substrate binding domain protein
NDENIPDB_01425 9.3e-195 patB 4.4.1.8 E Aminotransferase, class I II
NDENIPDB_01426 6.8e-18 patB 4.4.1.8 E Aminotransferase, class I II
NDENIPDB_01427 1.8e-119 S Phospholipase/Carboxylesterase
NDENIPDB_01428 2.6e-21 K Addiction module
NDENIPDB_01430 7.3e-33
NDENIPDB_01431 3e-127 L PFAM Integrase catalytic
NDENIPDB_01432 2e-42 L transposase activity
NDENIPDB_01433 3.4e-115 S CRISPR-associated protein (Cas_Csn2)
NDENIPDB_01434 6e-18 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
NDENIPDB_01435 9.7e-166 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
NDENIPDB_01436 0.0 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
NDENIPDB_01437 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NDENIPDB_01438 3.3e-256 lacS G Psort location CytoplasmicMembrane, score 10.00
NDENIPDB_01439 2.8e-185 lacR K Transcriptional regulator, LacI family
NDENIPDB_01440 0.0 V ABC transporter transmembrane region
NDENIPDB_01441 0.0 V ABC transporter, ATP-binding protein
NDENIPDB_01442 1.3e-96 K MarR family
NDENIPDB_01443 0.0 bglB 3.2.1.21 GH3 G Glycosyl hydrolase family 3 N-terminal domain protein
NDENIPDB_01444 7.4e-106 K Bacterial regulatory proteins, tetR family
NDENIPDB_01445 3.1e-188 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
NDENIPDB_01446 1.9e-181 G Transporter major facilitator family protein
NDENIPDB_01447 0.0 3.2.1.40 E Bacterial alpha-L-rhamnosidase C-terminal domain
NDENIPDB_01448 4.4e-215 EGP Major facilitator Superfamily
NDENIPDB_01449 2.2e-116 K Periplasmic binding protein domain
NDENIPDB_01450 4.9e-14 K helix_turn_helix, mercury resistance
NDENIPDB_01451 6.1e-221 lmrB U Major Facilitator Superfamily
NDENIPDB_01452 0.0 bgl2 3.2.1.21 GH3 G Fibronectin type III-like domain
NDENIPDB_01453 2.3e-108 K Bacterial regulatory proteins, tetR family
NDENIPDB_01454 1.1e-239 3.2.1.58 G Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDENIPDB_01455 0.0 3.2.1.37 GH43 G Glycosyl hydrolases family 43
NDENIPDB_01456 2.3e-234 3.2.1.58 G Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDENIPDB_01457 3.5e-236 G Transporter major facilitator family protein
NDENIPDB_01458 6.5e-108 K Bacterial regulatory proteins, tetR family
NDENIPDB_01459 0.0 lacZ3 3.2.1.23 G Beta-galactosidase trimerisation domain
NDENIPDB_01460 9.4e-115 K Bacterial regulatory proteins, tetR family
NDENIPDB_01461 1.3e-251 gshA 6.3.2.2 H Glutamate-cysteine ligase family 2(GCS2)
NDENIPDB_01462 0.0 hgdC I CoA enzyme activase uncharacterised domain (DUF2229)
NDENIPDB_01463 3.9e-156 hgdC I BadF/BadG/BcrA/BcrD ATPase family
NDENIPDB_01464 1.6e-139 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NDENIPDB_01465 0.0 nrdD 1.1.98.6 F Anaerobic ribonucleoside-triphosphate reductase
NDENIPDB_01466 8.9e-245 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
NDENIPDB_01467 7e-41 xseB 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
NDENIPDB_01469 4.1e-198 S Endonuclease/Exonuclease/phosphatase family
NDENIPDB_01470 3.5e-43 V ATPases associated with a variety of cellular activities
NDENIPDB_01471 1.4e-22
NDENIPDB_01472 4.5e-169 3.4.22.70 M Sortase family
NDENIPDB_01473 5.7e-15 M domain protein
NDENIPDB_01474 0.0 M cell wall anchor domain protein
NDENIPDB_01475 2.4e-231 aspB E Aminotransferase class-V
NDENIPDB_01476 3.3e-73 vsr L May nick specific sequences that contain T G mispairs resulting from m5C-deamination
NDENIPDB_01477 1e-187 afr_2 S Oxidoreductase family, NAD-binding Rossmann fold
NDENIPDB_01478 0.0 helD 3.6.4.12 L Psort location Cytoplasmic, score 8.87
NDENIPDB_01479 6e-199 V Domain of unknown function (DUF3427)
NDENIPDB_01480 1.5e-76
NDENIPDB_01481 2e-71 S Bacterial PH domain
NDENIPDB_01482 6.7e-248 S zinc finger
NDENIPDB_01483 3.8e-290 recE 2.7.7.7, 3.6.4.12 L Psort location Cytoplasmic, score
NDENIPDB_01484 5.2e-116 def 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
NDENIPDB_01485 1e-254 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NDENIPDB_01486 0.0 pepN 3.4.11.2 E Peptidase family M1 domain
NDENIPDB_01488 0.0 rnj J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
NDENIPDB_01489 8e-174 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDENIPDB_01490 0.0 pacS 3.6.3.54 P E1-E2 ATPase
NDENIPDB_01491 1.1e-38 csoR S Metal-sensitive transcriptional repressor
NDENIPDB_01492 1.4e-133 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
NDENIPDB_01493 1.7e-246 G Major Facilitator Superfamily
NDENIPDB_01494 0.0 uvrD2 3.6.4.12 L Belongs to the helicase family. UvrD subfamily
NDENIPDB_01495 0.0 uvrD 3.6.4.12 L PD-(D/E)XK nuclease superfamily
NDENIPDB_01497 1.6e-263 KLT Protein tyrosine kinase
NDENIPDB_01498 0.0 S Fibronectin type 3 domain
NDENIPDB_01499 7.7e-226 S ATPase family associated with various cellular activities (AAA)
NDENIPDB_01500 1.6e-219 S Protein of unknown function DUF58
NDENIPDB_01501 0.0 E Transglutaminase-like superfamily
NDENIPDB_01502 4.4e-163 3.1.3.16 T Sigma factor PP2C-like phosphatases
NDENIPDB_01503 1.3e-104 B Belongs to the OprB family
NDENIPDB_01504 1.8e-101 T Forkhead associated domain
NDENIPDB_01505 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NDENIPDB_01506 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NDENIPDB_01507 6.8e-100
NDENIPDB_01508 3.9e-181 mutY 2.1.1.37, 2.1.3.15, 6.4.1.2 L FES
NDENIPDB_01509 3.3e-126 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
NDENIPDB_01510 7.2e-253 S UPF0210 protein
NDENIPDB_01511 7.1e-43 gcvR T Belongs to the UPF0237 family
NDENIPDB_01512 0.0 cscA 3.2.1.26 GH32 G Belongs to the glycosyl hydrolase 32 family
NDENIPDB_01513 8.8e-177 K helix_turn _helix lactose operon repressor
NDENIPDB_01514 3.5e-115 S Protein of unknown function, DUF624
NDENIPDB_01515 2.9e-168 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01516 1.6e-177 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01517 1e-87 G Bacterial extracellular solute-binding protein
NDENIPDB_01518 2.2e-159 G Bacterial extracellular solute-binding protein
NDENIPDB_01520 9e-234 galK 2.7.1.6, 2.7.7.12 G Belongs to the GHMP kinase family. GalK subfamily
NDENIPDB_01521 4e-250 galT 2.7.7.12 C Galactose-1-phosphate uridyl transferase, N-terminal domain
NDENIPDB_01522 3.4e-141 glpR K DeoR C terminal sensor domain
NDENIPDB_01523 8.8e-228 pyrD 1.3.1.14, 1.3.5.2, 1.3.98.1 F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
NDENIPDB_01524 1.4e-220 namA 1.6.99.1 C NADH:flavin oxidoreductase / NADH oxidase family
NDENIPDB_01525 0.0 pon1 2.4.1.129, 3.4.16.4 GT51 M Transglycosylase
NDENIPDB_01526 2.3e-133 glxR K helix_turn_helix, cAMP Regulatory protein
NDENIPDB_01527 3.5e-216 lplA 6.3.1.20 H Biotin/lipoate A/B protein ligase family
NDENIPDB_01528 2.9e-86 J TM2 domain
NDENIPDB_01529 8.4e-193 leuB 1.1.1.85 CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
NDENIPDB_01530 0.0 ptrB 3.4.21.83 E Peptidase, S9A B C family, catalytic domain protein
NDENIPDB_01531 1.5e-236 S Uncharacterized conserved protein (DUF2183)
NDENIPDB_01532 1e-69 gcvH E The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein
NDENIPDB_01533 2.1e-207 nudC 1.3.7.1, 3.6.1.22 L NADH pyrophosphatase zinc ribbon domain
NDENIPDB_01534 3.4e-160 mhpC I Alpha/beta hydrolase family
NDENIPDB_01535 2.3e-113 F Domain of unknown function (DUF4916)
NDENIPDB_01536 3.9e-60 trxA 1.8.1.8, 1.8.1.9 O Belongs to the thioredoxin family
NDENIPDB_01538 5.6e-170 S G5
NDENIPDB_01539 2.1e-88
NDENIPDB_01540 9.6e-07 wcoI DM Psort location CytoplasmicMembrane, score
NDENIPDB_01541 1.7e-154 rfbP M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
NDENIPDB_01542 1.8e-93 rfbP M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
NDENIPDB_01543 0.0 3.2.1.20 GH31 G Belongs to the glycosyl hydrolase 31 family
NDENIPDB_01544 6.5e-148 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_01545 1.7e-162 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_01546 2.5e-269 G Bacterial extracellular solute-binding protein
NDENIPDB_01547 1.1e-184 K Psort location Cytoplasmic, score
NDENIPDB_01548 2.4e-181 K helix_turn _helix lactose operon repressor
NDENIPDB_01549 2.3e-223 G Bacterial extracellular solute-binding protein
NDENIPDB_01550 1.4e-162 G PFAM binding-protein-dependent transport systems inner membrane component
NDENIPDB_01551 6.6e-145 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01552 0.0 3.2.1.177 GH31 G Belongs to the glycosyl hydrolase 31 family
NDENIPDB_01553 1.7e-55 yccF S Inner membrane component domain
NDENIPDB_01554 9e-114 V Abi-like protein
NDENIPDB_01556 1.8e-120 S RloB-like protein
NDENIPDB_01557 2e-218 S AAA domain, putative AbiEii toxin, Type IV TA system
NDENIPDB_01559 1.2e-15
NDENIPDB_01560 2.6e-21
NDENIPDB_01561 2.3e-57
NDENIPDB_01567 1e-41 S enterobacterial common antigen metabolic process
NDENIPDB_01568 7e-57 S enterobacterial common antigen metabolic process
NDENIPDB_01569 0.0 C Domain of unknown function (DUF4365)
NDENIPDB_01570 5.4e-16 L Transposase
NDENIPDB_01571 7.6e-40 L PFAM Integrase catalytic
NDENIPDB_01573 2.9e-217 S KAP family P-loop domain
NDENIPDB_01574 3.9e-73 S enterobacterial common antigen metabolic process
NDENIPDB_01575 1.5e-169 rfbA 2.7.7.24 H Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
NDENIPDB_01576 9e-262 rmlC 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
NDENIPDB_01577 1.1e-197 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
NDENIPDB_01578 5.4e-98 cps2J S Polysaccharide biosynthesis protein
NDENIPDB_01579 3.7e-286 menD 2.2.1.9 H Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
NDENIPDB_01580 2.6e-123 IQ Enoyl-(Acyl carrier protein) reductase
NDENIPDB_01581 2.9e-173 S slime layer polysaccharide biosynthetic process
NDENIPDB_01582 1.8e-47
NDENIPDB_01583 3.4e-76 GT2 M Glycosyl transferase, group 2 family protein
NDENIPDB_01584 3.2e-185 rgpAc GT4 M Domain of unknown function (DUF1972)
NDENIPDB_01585 3.1e-43 L Transposase
NDENIPDB_01586 3.3e-36 L Integrase core domain
NDENIPDB_01587 4.7e-45 L Psort location Cytoplasmic, score 8.87
NDENIPDB_01588 4.5e-50 dcd 3.5.4.13 F Belongs to the dCTP deaminase family
NDENIPDB_01590 8e-105
NDENIPDB_01591 1.2e-20
NDENIPDB_01592 5.5e-190 wcoI DM Psort location CytoplasmicMembrane, score
NDENIPDB_01593 4.6e-223 pflA S Protein of unknown function (DUF4012)
NDENIPDB_01594 5.3e-86 3.1.3.48 T Low molecular weight phosphatase family
NDENIPDB_01595 3.8e-158 S Endonuclease/Exonuclease/phosphatase family
NDENIPDB_01596 2.5e-47
NDENIPDB_01597 2.6e-283 EGP Major facilitator Superfamily
NDENIPDB_01598 3.7e-243 T Diguanylate cyclase (GGDEF) domain protein
NDENIPDB_01599 6.2e-127 L Protein of unknown function (DUF1524)
NDENIPDB_01600 4.2e-166 dkgA 1.1.1.346 S Oxidoreductase, aldo keto reductase family protein
NDENIPDB_01601 2.1e-241 mntH P H( )-stimulated, divalent metal cation uptake system
NDENIPDB_01602 8.9e-198 K helix_turn _helix lactose operon repressor
NDENIPDB_01603 0.0 bga1 3.2.1.23 G Psort location Cytoplasmic, score 8.87
NDENIPDB_01604 9.1e-240 G Bacterial extracellular solute-binding protein
NDENIPDB_01605 1e-128 pdxT 4.3.3.6 H Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
NDENIPDB_01606 4e-156 pdxS 4.3.3.6 H Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
NDENIPDB_01607 0.0 cydD V ABC transporter transmembrane region
NDENIPDB_01608 0.0 fadD 6.2.1.3 I AMP-binding enzyme
NDENIPDB_01609 6.3e-298 araA 5.3.1.4 G Catalyzes the conversion of L-arabinose to L-ribulose
NDENIPDB_01610 1e-130 araD 4.1.2.17, 5.1.3.4 G Class II Aldolase and Adducin N-terminal domain
NDENIPDB_01611 0.0 araB 2.7.1.16, 2.7.1.17 G FGGY family of carbohydrate kinases, C-terminal domain
NDENIPDB_01612 9.6e-211 K helix_turn _helix lactose operon repressor
NDENIPDB_01613 7e-286 maf 1.1.1.25, 2.1.1.190, 3.6.1.55, 3.6.1.67 DF Maf-like protein
NDENIPDB_01614 1.4e-189 thrB 2.7.1.39 E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
NDENIPDB_01615 1.6e-241 hom 1.1.1.3 E Homoserine dehydrogenase
NDENIPDB_01616 9.1e-300 lysA 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
NDENIPDB_01617 0.0 argS 6.1.1.19 J Arginyl-tRNA synthetase
NDENIPDB_01618 4.8e-271 mmuP E amino acid
NDENIPDB_01619 8e-64 psp1 3.5.99.10 J Endoribonuclease L-PSP
NDENIPDB_01621 4.7e-122 cyaA 4.6.1.1 S CYTH
NDENIPDB_01622 7.8e-169 trxA2 O Tetratricopeptide repeat
NDENIPDB_01623 1.1e-178
NDENIPDB_01624 9e-194
NDENIPDB_01625 6.8e-149 fkbB 5.2.1.8 M FKBP-type peptidyl-prolyl cis-trans isomerase
NDENIPDB_01626 2.3e-122 nucS L Cleaves both 3' and 5' ssDNA extremities of branched DNA structures
NDENIPDB_01627 2.1e-45 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
NDENIPDB_01628 5.6e-283 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
NDENIPDB_01629 1.6e-163 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NDENIPDB_01630 1.1e-308 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NDENIPDB_01631 4.5e-149 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
NDENIPDB_01632 4.4e-57 atpF C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NDENIPDB_01633 8.9e-31 atpE C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
NDENIPDB_01634 2e-146 atpB C it plays a direct role in the translocation of protons across the membrane
NDENIPDB_01635 5.4e-208 metAA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDENIPDB_01637 8.9e-13 K BetR domain
NDENIPDB_01642 5e-54
NDENIPDB_01643 1.2e-10
NDENIPDB_01644 4.9e-91 L HNH endonuclease
NDENIPDB_01645 1.5e-15
NDENIPDB_01646 2.9e-207 S Terminase
NDENIPDB_01647 1.7e-157 S Phage portal protein
NDENIPDB_01648 4.4e-164 S Caudovirus prohead serine protease
NDENIPDB_01649 1.7e-35
NDENIPDB_01650 6.6e-60
NDENIPDB_01651 1.5e-60
NDENIPDB_01652 5.7e-54
NDENIPDB_01653 7.6e-37
NDENIPDB_01654 9.2e-150 NT phage tail tape measure protein
NDENIPDB_01655 2.2e-109
NDENIPDB_01656 6.2e-46
NDENIPDB_01657 1.1e-28 S Bacteriophage holin family
NDENIPDB_01658 8.3e-82 3.2.1.20, 3.5.1.28 GH31 V N-acetylmuramoyl-L-alanine amidase
NDENIPDB_01659 4.8e-90 L Phage integrase family
NDENIPDB_01661 5e-273 frc 2.8.3.16 C Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
NDENIPDB_01662 2.2e-191 yfdV S Membrane transport protein
NDENIPDB_01663 0.0 oxc 4.1.1.8 EH Thiamine pyrophosphate enzyme, central domain
NDENIPDB_01664 7.1e-175 M LPXTG-motif cell wall anchor domain protein
NDENIPDB_01665 0.0 glgE 2.4.99.16 GH13 G Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB
NDENIPDB_01666 3.4e-91 ppa 3.6.1.1 C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NDENIPDB_01667 9.4e-98 mntP P Probably functions as a manganese efflux pump
NDENIPDB_01668 4.9e-134
NDENIPDB_01669 4.9e-134 KT Transcriptional regulatory protein, C terminal
NDENIPDB_01670 3.2e-123 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NDENIPDB_01671 6e-288 E Bacterial extracellular solute-binding proteins, family 5 Middle
NDENIPDB_01672 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
NDENIPDB_01673 0.0 S domain protein
NDENIPDB_01674 1e-69 tyrA 5.4.99.5 E Chorismate mutase type II
NDENIPDB_01675 1.3e-79 K helix_turn_helix ASNC type
NDENIPDB_01676 1.9e-247 rho K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
NDENIPDB_01677 0.0 5.4.99.9 H Flavin containing amine oxidoreductase
NDENIPDB_01678 2.1e-51 S Protein of unknown function (DUF2469)
NDENIPDB_01679 2e-205 2.3.1.57 J Acetyltransferase (GNAT) domain
NDENIPDB_01680 8.7e-284 gatB 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDENIPDB_01681 4.2e-286 gatA 6.3.5.6, 6.3.5.7 F Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
NDENIPDB_01682 1.3e-46 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDENIPDB_01683 6.2e-134 K Psort location Cytoplasmic, score
NDENIPDB_01684 3.1e-133 spoU 2.1.1.185 J RNA methyltransferase TrmH family
NDENIPDB_01685 2.7e-104 pyrE 2.4.2.10 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NDENIPDB_01686 9.1e-168 rmuC S RmuC family
NDENIPDB_01687 8e-136 3.6.3.3, 3.6.3.5, 3.6.3.54 P Heavy metal translocating P-type atpase
NDENIPDB_01688 0.0 clpB O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
NDENIPDB_01689 1.4e-164 fahA Q Fumarylacetoacetate (FAA) hydrolase family
NDENIPDB_01690 2.7e-146 yggS S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
NDENIPDB_01691 2.5e-80
NDENIPDB_01692 1.1e-209 gluQ 6.1.1.17 J Belongs to the class-I aminoacyl-tRNA synthetase family
NDENIPDB_01693 3.3e-54 M Protein of unknown function (DUF3152)
NDENIPDB_01694 4.2e-09 M Protein of unknown function (DUF3152)
NDENIPDB_01695 9.2e-130 gla U Belongs to the MIP aquaporin (TC 1.A.8) family
NDENIPDB_01697 1.7e-70 rplI J Binds to the 23S rRNA
NDENIPDB_01698 3.5e-36 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
NDENIPDB_01699 3.8e-66 ssb1 L Single-stranded DNA-binding protein
NDENIPDB_01700 2.5e-46 rpsF J Binds together with S18 to 16S ribosomal RNA
NDENIPDB_01701 3.3e-186 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDENIPDB_01702 5.7e-175 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NDENIPDB_01703 1.1e-259 EGP Major Facilitator Superfamily
NDENIPDB_01704 2.8e-166 iunH2 3.2.2.1 F Inosine-uridine preferring nucleoside hydrolase
NDENIPDB_01705 1.1e-197 K helix_turn _helix lactose operon repressor
NDENIPDB_01706 1.2e-61
NDENIPDB_01707 6.4e-232 S AAA domain
NDENIPDB_01708 2.8e-204 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
NDENIPDB_01709 2.2e-254 S Domain of unknown function (DUF4143)
NDENIPDB_01710 0.0 XK27_08315 M Psort location CytoplasmicMembrane, score 9.26
NDENIPDB_01711 0.0 glfT 2.4.1.288 GT2 S Glycosyltransferase like family 2
NDENIPDB_01712 3.8e-101 3.2.1.97 GH101 M Cell wall-binding repeat protein
NDENIPDB_01713 7.4e-207 S Predicted membrane protein (DUF2142)
NDENIPDB_01714 3.9e-259 3.2.1.97 GH101 S Psort location Extracellular, score
NDENIPDB_01715 1.1e-239 rgpD 3.6.3.38 GM ABC transporter, ATP-binding protein
NDENIPDB_01716 4.2e-147 rgpC U Transport permease protein
NDENIPDB_01717 3.4e-181 GM GDP-mannose 4,6 dehydratase
NDENIPDB_01718 7.9e-137 ispD 1.1.1.405, 2.7.7.40, 2.7.7.60, 4.6.1.12 I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)
NDENIPDB_01719 3.7e-210 M LicD family
NDENIPDB_01720 0.0 2.4.1.288 GT2 S Glycosyltransferase like family 2
NDENIPDB_01721 2.5e-200 cps3I G Psort location CytoplasmicMembrane, score 9.99
NDENIPDB_01722 4.5e-196 3.1.1.5, 3.2.1.97 GH101 E GDSL-like Lipase/Acylhydrolase family
NDENIPDB_01723 1.1e-300
NDENIPDB_01724 7.2e-175 ykoT 2.4.1.83 GT2 M Glycosyl transferase family 2
NDENIPDB_01725 1.9e-15 3.2.1.97 GH101 S CHAP domain
NDENIPDB_01726 1.6e-260 lytC 3.2.1.17, 3.2.1.96, 3.2.1.97 GH101 M Glycosyl hydrolases family 25
NDENIPDB_01727 6.8e-259 S AAA domain
NDENIPDB_01728 4.5e-74
NDENIPDB_01729 7e-298 3.1.1.53 E Carbohydrate esterase, sialic acid-specific acetylesterase
NDENIPDB_01730 1.6e-58
NDENIPDB_01732 3.5e-155 EGP Major facilitator Superfamily
NDENIPDB_01733 0.0 S Psort location CytoplasmicMembrane, score 9.99
NDENIPDB_01734 5.2e-240 V ABC transporter permease
NDENIPDB_01735 6.4e-157 V ABC transporter
NDENIPDB_01736 5.1e-150 T HD domain
NDENIPDB_01737 1e-167 S Glutamine amidotransferase domain
NDENIPDB_01738 0.0 kup P Transport of potassium into the cell
NDENIPDB_01739 2.2e-184 tatD L TatD related DNase
NDENIPDB_01740 0.0 G Alpha-L-arabinofuranosidase C-terminus
NDENIPDB_01741 2.3e-233 G Alpha galactosidase A
NDENIPDB_01742 2.3e-221 K helix_turn _helix lactose operon repressor
NDENIPDB_01743 0.0 rafA 3.2.1.22 G Psort location Cytoplasmic, score 8.87
NDENIPDB_01744 3e-125
NDENIPDB_01745 0.0 yknV V ABC transporter
NDENIPDB_01746 0.0 mdlA2 V ABC transporter
NDENIPDB_01747 1.1e-214 lipA I Hydrolase, alpha beta domain protein
NDENIPDB_01748 5e-27 S Psort location Cytoplasmic, score 8.87
NDENIPDB_01749 3.8e-156 I alpha/beta hydrolase fold
NDENIPDB_01750 3e-231 M Protein of unknown function (DUF2961)
NDENIPDB_01751 3.2e-153 P Binding-protein-dependent transport system inner membrane component
NDENIPDB_01752 3.2e-159 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01753 5.1e-256 G Bacterial extracellular solute-binding protein
NDENIPDB_01754 2.2e-190 K helix_turn _helix lactose operon repressor
NDENIPDB_01755 0.0 M probably involved in cell wall
NDENIPDB_01756 5.9e-252 3.2.1.14 GH18 S Carbohydrate binding domain
NDENIPDB_01757 0.0 T Diguanylate cyclase, GGDEF domain
NDENIPDB_01758 8.7e-187 lacR K Transcriptional regulator, LacI family
NDENIPDB_01759 7.8e-236 nagA 3.5.1.25 G Amidohydrolase family
NDENIPDB_01760 7.6e-149 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
NDENIPDB_01761 0.0 G Glycosyl hydrolase family 20, domain 2
NDENIPDB_01762 8.6e-173 2.7.1.2 GK ROK family
NDENIPDB_01763 4.4e-164 G ABC transporter permease
NDENIPDB_01764 1.7e-146 G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01765 1.1e-239 G Bacterial extracellular solute-binding protein
NDENIPDB_01766 7.6e-208 GK ROK family
NDENIPDB_01767 2.1e-264 lacS G Psort location CytoplasmicMembrane, score 10.00
NDENIPDB_01768 0.0 lacL 3.2.1.23 G Psort location Cytoplasmic, score 8.87
NDENIPDB_01769 6.6e-135 tenA 3.5.99.2 K Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4-amino-5-aminomethyl-2-methylpyrimidine to 4-amino- 5-hydroxymethyl-2-methylpyrimidine (HMP)
NDENIPDB_01770 0.0 cbgA_1 3.2.1.23 G Belongs to the glycosyl hydrolase 2 family
NDENIPDB_01771 0.0 metG 6.1.1.10 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDENIPDB_01772 6.6e-107
NDENIPDB_01773 6.4e-74
NDENIPDB_01774 6.1e-191 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
NDENIPDB_01775 8.1e-17 3.2.1.78 GH26 G Glycosyl hydrolase family 26
NDENIPDB_01776 5.8e-126 dedA S SNARE associated Golgi protein
NDENIPDB_01778 8.7e-130 S HAD hydrolase, family IA, variant 3
NDENIPDB_01779 8.6e-47
NDENIPDB_01780 4.5e-115 hspR K transcriptional regulator, MerR family
NDENIPDB_01781 1.1e-157 dnaJ1 O DnaJ molecular chaperone homology domain
NDENIPDB_01782 2.8e-48 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NDENIPDB_01783 0.0 dnaK O Heat shock 70 kDa protein
NDENIPDB_01784 2.5e-144 S Mitochondrial biogenesis AIM24
NDENIPDB_01785 5.6e-113 phoA 3.1.3.1, 3.1.3.39 P Alkaline phosphatase homologues
NDENIPDB_01786 7e-127 S membrane transporter protein
NDENIPDB_01787 1.2e-143 srtC 3.4.22.70 M Sortase family
NDENIPDB_01789 8.3e-193 K Psort location Cytoplasmic, score
NDENIPDB_01790 6e-129 traX S TraX protein
NDENIPDB_01791 1.7e-142 S HAD-hyrolase-like
NDENIPDB_01792 0.0 pulA 3.2.1.41 CBM48,GH13 G Belongs to the glycosyl hydrolase 13 family
NDENIPDB_01793 0.0 malQ 2.4.1.18, 2.4.1.25, 3.2.1.196, 5.4.99.15 CBM48,GH13,GH77 G 4-alpha-glucanotransferase
NDENIPDB_01794 6.5e-105 S Protein of unknown function, DUF624
NDENIPDB_01795 4e-153 rafG G ABC transporter permease
NDENIPDB_01796 3.7e-154 msmF G Binding-protein-dependent transport system inner membrane component
NDENIPDB_01797 2.1e-180 K Psort location Cytoplasmic, score
NDENIPDB_01798 5.2e-182 K Periplasmic binding protein-like domain
NDENIPDB_01799 0.0 3.2.1.10, 3.2.1.20, 3.2.1.93 GH13,GH31 G Alpha-amylase domain
NDENIPDB_01800 1.4e-256 amyE G Bacterial extracellular solute-binding protein
NDENIPDB_01801 2.9e-136 G Phosphoglycerate mutase family
NDENIPDB_01802 9.6e-62 S Protein of unknown function (DUF4235)
NDENIPDB_01803 1e-142 nfrA 1.5.1.38, 1.5.1.39 C Nitroreductase family

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)