ORF_ID e_value Gene_name EC_number CAZy COGs Description
PLAFGAII_00002 1.2e-159 yeiH S Membrane
PLAFGAII_00003 9.3e-127 mur1 3.4.17.14, 3.5.1.28 NU muramidase
PLAFGAII_00004 2.9e-165 cpsY K Transcriptional regulator
PLAFGAII_00005 2.7e-103 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PLAFGAII_00006 1.1e-102 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PLAFGAII_00007 6.6e-59 phnA P Alkylphosphonate utilization operon protein PhnA
PLAFGAII_00008 3.1e-105 artQ P ABC transporter (Permease
PLAFGAII_00009 4.4e-112 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_00010 4.6e-157 aatB ET ABC transporter substrate-binding protein
PLAFGAII_00011 1.1e-267 uvrX 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PLAFGAII_00012 2.9e-50
PLAFGAII_00013 1e-44
PLAFGAII_00014 4.6e-188 adhP 1.1.1.1 C alcohol dehydrogenase
PLAFGAII_00015 6.7e-99 rimL J COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
PLAFGAII_00016 1.9e-302 guaA 2.3.1.128, 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
PLAFGAII_00017 3.5e-126 gntR1 K transcriptional
PLAFGAII_00018 2e-55 ylxM S Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PLAFGAII_00019 2.9e-274 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PLAFGAII_00020 5.3e-87
PLAFGAII_00021 7e-92 niaR S small molecule binding protein (contains 3H domain)
PLAFGAII_00022 1.6e-128 K DNA-binding helix-turn-helix protein
PLAFGAII_00023 7.2e-158 ylqF S Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PLAFGAII_00024 7e-136 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PLAFGAII_00025 1.7e-165 GK ROK family
PLAFGAII_00026 6e-157 dprA LU DNA protecting protein DprA
PLAFGAII_00027 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PLAFGAII_00028 4.1e-84 mutF V AAA domain, putative AbiEii toxin, Type IV TA system
PLAFGAII_00029 5.9e-52 V ABC-2 family transporter protein
PLAFGAII_00031 7.1e-121 T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PLAFGAII_00032 1.3e-222 T PhoQ Sensor
PLAFGAII_00033 2.8e-257 trmFO 2.1.1.74 J Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
PLAFGAII_00034 3.6e-221 XK27_05470 E Methionine synthase
PLAFGAII_00035 4.2e-71 ndk 2.7.4.6 F Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
PLAFGAII_00036 1.4e-41 pspE P Rhodanese-like protein
PLAFGAII_00037 8.2e-137 IQ Acetoin reductase
PLAFGAII_00039 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
PLAFGAII_00042 0.0 alsS 2.2.1.6 EH Belongs to the TPP enzyme family
PLAFGAII_00043 8.8e-133 budA 4.1.1.5 H Belongs to the alpha-acetolactate decarboxylase family
PLAFGAII_00044 9.9e-66 mgrA K Transcriptional regulator, MarR family
PLAFGAII_00045 4.8e-143 1.6.5.2 GM epimerase
PLAFGAII_00046 8.3e-123 proV E abc transporter atp-binding protein
PLAFGAII_00047 8.3e-266 proWX P ABC transporter
PLAFGAII_00048 5.6e-53 S Phenazine biosynthesis protein
PLAFGAII_00049 3.9e-72 S Phenazine biosynthesis protein
PLAFGAII_00050 8.2e-92 2.7.7.65 T Psort location CytoplasmicMembrane, score
PLAFGAII_00051 2.8e-132 cbiQ P cobalt transport
PLAFGAII_00052 1.1e-155 P ATPase activity
PLAFGAII_00053 1.4e-150 cbiO2 P Zeta toxin
PLAFGAII_00054 4.4e-112 tnp L DDE domain
PLAFGAII_00055 2.9e-33 pnuC H nicotinamide mononucleotide transporter
PLAFGAII_00057 5.5e-67 S Protein of unknown function with HXXEE motif
PLAFGAII_00058 1.7e-96 K Transcriptional regulator, TetR family
PLAFGAII_00059 4.6e-155 czcD P cation diffusion facilitator family transporter
PLAFGAII_00060 1e-188 hemH 4.99.1.1, 4.99.1.9 H Catalyzes the ferrous insertion into protoporphyrin IX
PLAFGAII_00061 3.4e-186 adhB 1.1.1.1, 1.1.1.14 E Dehydrogenase
PLAFGAII_00062 3.7e-235 S the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_00063 2.1e-109 gph 3.1.3.18 S HAD hydrolase, family IA, variant 1
PLAFGAII_00064 0.0 V Type III restriction enzyme, res subunit
PLAFGAII_00065 2.1e-174 yclQ P ABC-type enterochelin transport system, periplasmic component
PLAFGAII_00066 1.6e-233 dinF V Mate efflux family protein
PLAFGAII_00067 1.3e-271 S Psort location CytoplasmicMembrane, score
PLAFGAII_00068 2.7e-24 K Cro/C1-type HTH DNA-binding domain
PLAFGAII_00071 1.5e-308 FbpA K RNA-binding protein homologous to eukaryotic snRNP
PLAFGAII_00072 4.8e-132 S TraX protein
PLAFGAII_00073 2e-92 thiJ 2.7.11.1, 3.5.1.124 S DJ-1 family
PLAFGAII_00074 1.5e-144 pyrK C Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( )
PLAFGAII_00075 9.4e-175 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
PLAFGAII_00076 1.6e-180 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PLAFGAII_00077 1.6e-52 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PLAFGAII_00078 1.6e-129 cas6 S Pfam:DUF2276
PLAFGAII_00079 0.0 csm1 S CRISPR-associated protein Csm1 family
PLAFGAII_00080 7.3e-62 csm2 L Pfam:DUF310
PLAFGAII_00081 2.4e-116 csm3 L RAMP superfamily
PLAFGAII_00082 3.7e-165 csm4 L CRISPR-associated RAMP protein, Csm4 family
PLAFGAII_00083 4.1e-203 csm5 L CRISPR-associated RAMP protein, Csm5 family
PLAFGAII_00084 3.9e-114 csm6 S Psort location Cytoplasmic, score
PLAFGAII_00085 1e-147 csm6 S Psort location Cytoplasmic, score
PLAFGAII_00086 1.1e-124 pyrF 4.1.1.23 F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
PLAFGAII_00087 4.4e-112 pyrE 2.4.2.10, 4.1.1.23 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PLAFGAII_00088 8.5e-236 nylA 3.5.1.4 J Belongs to the amidase family
PLAFGAII_00089 1.3e-148 yckB ET Belongs to the bacterial solute-binding protein 3 family
PLAFGAII_00090 6.4e-82 yecS P ABC transporter (Permease
PLAFGAII_00091 0.0 sasH 3.1.3.5, 3.6.1.45 F Belongs to the 5'-nucleotidase family
PLAFGAII_00092 1.3e-176 bglC K Transcriptional regulator
PLAFGAII_00093 1e-243 mnmE S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PLAFGAII_00094 6.2e-241 agcS E (Alanine) symporter
PLAFGAII_00095 0.0 pcrA 3.6.4.12 L ATP-dependent DNA helicase
PLAFGAII_00096 2.3e-240 metY 2.5.1.49 E o-acetylhomoserine
PLAFGAII_00097 1.5e-135 S haloacid dehalogenase-like hydrolase
PLAFGAII_00098 3.2e-86 tpx 1.11.1.15 O Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PLAFGAII_00099 4.8e-111 hsdS2 2.1.1.72 V Type I restriction modification DNA specificity domain
PLAFGAII_00100 6.1e-35 M1-755 P Hemerythrin HHE cation binding domain protein
PLAFGAII_00101 5.5e-237 XK27_04775 S hemerythrin HHE cation binding domain
PLAFGAII_00102 4.8e-146 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PLAFGAII_00103 4e-167 ribF 2.7.1.26, 2.7.7.2 H Belongs to the ribF family
PLAFGAII_00104 7.2e-71 spxA 1.20.4.1 K Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
PLAFGAII_00105 1.5e-43 yktA S Belongs to the UPF0223 family
PLAFGAII_00106 1.3e-142 suhB 3.1.3.25 G Belongs to the inositol monophosphatase superfamily
PLAFGAII_00107 8.5e-251 rsmF 2.1.1.176, 2.1.1.178 J NOL1 NOP2 sun family protein
PLAFGAII_00108 9e-156 pstS P phosphate
PLAFGAII_00109 1.4e-156 pstC P probably responsible for the translocation of the substrate across the membrane
PLAFGAII_00110 1.3e-154 pstA P phosphate transport system permease
PLAFGAII_00111 4e-150 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PLAFGAII_00112 3.5e-140 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PLAFGAII_00113 7.1e-113 phoU P Plays a role in the regulation of phosphate uptake
PLAFGAII_00114 0.0 pepN 3.4.11.2 E aminopeptidase
PLAFGAII_00115 3.3e-192 xerS D Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division
PLAFGAII_00116 3.6e-185 lplA 6.3.1.20 H Lipoate-protein ligase
PLAFGAII_00117 4.4e-38
PLAFGAII_00118 0.0 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PLAFGAII_00119 1.3e-300 malQ 2.4.1.25 GH77 G 4-alpha-glucanotransferase
PLAFGAII_00120 3e-155 malR K Transcriptional regulator
PLAFGAII_00121 3.9e-229 malX G ABC transporter
PLAFGAII_00122 5.7e-250 malF P ABC transporter (Permease
PLAFGAII_00123 9.8e-152 malG P ABC transporter (Permease
PLAFGAII_00124 4.7e-213 msmX P Belongs to the ABC transporter superfamily
PLAFGAII_00125 9.5e-23 tatA U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system
PLAFGAII_00126 6e-118 tatC U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PLAFGAII_00127 4.2e-287 ywbL P COG0672 High-affinity Fe2 Pb2 permease
PLAFGAII_00128 4.2e-228 ycdB P peroxidase
PLAFGAII_00129 2.1e-144 ycdO P periplasmic lipoprotein involved in iron transport
PLAFGAII_00130 0.0 pulA 3.2.1.1, 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PLAFGAII_00131 0.0 3.5.1.28 NU amidase activity
PLAFGAII_00132 0.0 lpdA 1.8.1.4 C Dehydrogenase
PLAFGAII_00133 7.6e-210 acoC 2.3.1.12 C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
PLAFGAII_00134 1.9e-181 acoB 1.2.4.1, 1.2.4.4 C COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
PLAFGAII_00135 2.5e-183 acoA 1.2.4.1, 1.2.4.4 C Dehydrogenase E1 component
PLAFGAII_00136 1.2e-204 hpk9 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00137 1.3e-224 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00138 0.0 S the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_00139 8.2e-235 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
PLAFGAII_00140 4.1e-121 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PLAFGAII_00141 1.6e-216 yeaB K Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PLAFGAII_00142 1.8e-248 dacA1 3.4.16.4 M Belongs to the peptidase S11 family
PLAFGAII_00143 1.6e-180 dacA1 3.4.16.4 M Belongs to the peptidase S11 family
PLAFGAII_00144 7.9e-157 rssA S Phospholipase, patatin family
PLAFGAII_00145 1.8e-102 estA E Lysophospholipase L1 and related esterases
PLAFGAII_00146 9.8e-286 S unusual protein kinase
PLAFGAII_00147 4.9e-39 S granule-associated protein
PLAFGAII_00148 3.9e-289 bglH 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PLAFGAII_00149 5.2e-196 S hmm pf01594
PLAFGAII_00150 9.9e-106 G Belongs to the phosphoglycerate mutase family
PLAFGAII_00151 1.8e-107 G Belongs to the phosphoglycerate mutase family
PLAFGAII_00152 4.8e-108 pgm G Belongs to the phosphoglycerate mutase family
PLAFGAII_00153 1.8e-150 supH 3.1.3.102, 3.1.3.104 S Sucrose-6F-phosphate phosphohydrolase
PLAFGAII_00155 3.8e-177 wbbI M transferase activity, transferring glycosyl groups
PLAFGAII_00156 2.7e-185 sacB GT2,GT4 M Stealth protein CR2, conserved region 2
PLAFGAII_00157 1.1e-214 glf 5.4.99.9 M UDP-galactopyranose mutase
PLAFGAII_00158 2.4e-243 epsU S Polysaccharide biosynthesis protein
PLAFGAII_00159 1.7e-122 cps3F
PLAFGAII_00160 2.9e-164 M Glycosyltransferase like family 2
PLAFGAII_00161 4e-165
PLAFGAII_00162 3.4e-120 Z012_10770 M Domain of unknown function (DUF1919)
PLAFGAII_00163 9.8e-211 wcoF M Glycosyltransferase, group 1 family protein
PLAFGAII_00164 2.6e-219 rgpAc GT4 M group 1 family protein
PLAFGAII_00165 1e-251 cpsE M Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
PLAFGAII_00166 7.7e-116 cpsD D COG0489 ATPases involved in chromosome partitioning
PLAFGAII_00167 1.7e-109 cps4C M biosynthesis protein
PLAFGAII_00168 6.8e-133 cpsB 3.1.3.48 GM Capsular polysaccharide biosynthesis protein
PLAFGAII_00169 9.4e-251 cps4A K Cell envelope-like function transcriptional attenuator common domain protein
PLAFGAII_00170 4e-130 deoD 2.4.2.1, 2.4.2.28 F purine nucleoside phosphorylase
PLAFGAII_00171 2.5e-132 yfeJ 6.3.5.2 F glutamine amidotransferase
PLAFGAII_00172 4.8e-171 clcA_2 P Chloride transporter, ClC family
PLAFGAII_00173 2.2e-148 punA 2.4.2.1 F The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
PLAFGAII_00174 1e-93 S Protein of unknown function (DUF1697)
PLAFGAII_00175 1.6e-232 deoB 5.4.2.7 G Phosphotransfer between the C1 and C5 carbon atoms of pentose
PLAFGAII_00176 1.8e-119 rpiA 2.7.1.12, 2.7.1.15, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PLAFGAII_00177 8.2e-252 V Glucan-binding protein C
PLAFGAII_00178 6.5e-227 V Glucan-binding protein C
PLAFGAII_00179 1.8e-107 ung2 3.2.2.27 L Uracil-DNA glycosylase
PLAFGAII_00180 1.8e-270 pepV 3.5.1.18 E Dipeptidase
PLAFGAII_00181 4.9e-27 dmpI 5.3.2.6 G Belongs to the 4-oxalocrotonate tautomerase family
PLAFGAII_00182 8.3e-181 femA 2.3.2.10, 2.3.2.16 V FemAB family
PLAFGAII_00183 4.9e-17 atpE C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PLAFGAII_00184 1.7e-120 atpB C it plays a direct role in the translocation of protons across the membrane
PLAFGAII_00185 9.5e-78 atpF C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PLAFGAII_00186 2.5e-84 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PLAFGAII_00187 5e-279 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PLAFGAII_00188 6.2e-157 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PLAFGAII_00189 2.3e-262 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PLAFGAII_00190 2.6e-68 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
PLAFGAII_00191 3.5e-217 ftsW D Belongs to the SEDS family
PLAFGAII_00192 2.8e-224 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PLAFGAII_00193 9.9e-135 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PLAFGAII_00194 0.0 tkt 2.2.1.1 G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PLAFGAII_00196 1.3e-108 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PLAFGAII_00197 1.1e-158 holB 2.7.7.7 L dna polymerase iii
PLAFGAII_00198 5.8e-133 yaaT S stage 0 sporulation protein
PLAFGAII_00199 1.2e-54 yabA L Involved in initiation control of chromosome replication
PLAFGAII_00200 3.3e-158 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PLAFGAII_00201 1.3e-103 mur1 3.4.17.14, 3.5.1.28 NU amidase activity
PLAFGAII_00202 1.2e-141 XK27_04800 S Sucrose-6F-phosphate phosphohydrolase
PLAFGAII_00203 2.7e-75 S Bacterial inner membrane protein
PLAFGAII_00204 2.3e-113 3.4.17.14, 3.5.1.28 NU amidase activity
PLAFGAII_00205 3.5e-294 nptA P COG1283 Na phosphate symporter
PLAFGAII_00206 6.8e-220 nagA 3.5.1.25 G Belongs to the metallo-dependent hydrolases superfamily. NagA family
PLAFGAII_00207 7e-19 S membrane
PLAFGAII_00208 1.2e-189 S membrane
PLAFGAII_00209 3.7e-176 glyQ 6.1.1.14 J glycyl-tRNA synthetase alpha subunit
PLAFGAII_00210 0.0 glyS 6.1.1.14 J Glycyl-tRNA synthetase beta subunit
PLAFGAII_00211 1.7e-38 ynzC S UPF0291 protein
PLAFGAII_00212 8.7e-254 cycA E permease
PLAFGAII_00213 2.9e-10 uvrX 2.7.7.7 L impB/mucB/samB family
PLAFGAII_00214 0.0 pts33BCA 2.7.1.201, 2.7.1.208, 2.7.1.211 G pts system
PLAFGAII_00215 1.6e-140 ppiA 5.2.1.8 O PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PLAFGAII_00219 3.7e-157 V AAA domain, putative AbiEii toxin, Type IV TA system
PLAFGAII_00220 1.4e-56 S ABC-2 type transporter
PLAFGAII_00221 3.1e-96
PLAFGAII_00223 4.7e-168 fhuR K transcriptional regulator (lysR family)
PLAFGAII_00224 4.8e-76 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PLAFGAII_00225 1.1e-161 rluD 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PLAFGAII_00226 1.8e-87 pyrR 2.4.2.9 F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PLAFGAII_00227 1.8e-221 pyrP F uracil Permease
PLAFGAII_00228 6.5e-173 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
PLAFGAII_00229 4.6e-210 carA 6.3.5.5 F carbamoyl-phosphate synthetase glutamine chain
PLAFGAII_00230 0.0 carB 6.3.5.5 F carbamoyl-phosphate synthetase ammonia chain
PLAFGAII_00231 2.8e-121 rsmJ 2.1.1.242 J Putative SAM-dependent methyltransferase
PLAFGAII_00232 1.5e-180 acrA M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PLAFGAII_00233 5.8e-121 macB V ABC transporter, ATP-binding protein
PLAFGAII_00234 3.8e-213 V permease protein
PLAFGAII_00235 3.7e-77 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PLAFGAII_00236 2.1e-45 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
PLAFGAII_00238 2e-23 M Psort location Cytoplasmic, score
PLAFGAII_00239 7.7e-242 3.5.1.28 NU GBS Bsp-like repeat
PLAFGAII_00241 5.8e-25 2.4.1.21 GT5 M Right handed beta helix region
PLAFGAII_00242 2.5e-135 S double-stranded DNA endodeoxyribonuclease activity
PLAFGAII_00243 2.4e-303 hsdM 2.1.1.72 V type I restriction-modification system
PLAFGAII_00244 1.5e-127 S Protein conserved in bacteria
PLAFGAII_00245 3.2e-135 hsdS 3.1.21.3 V type I restriction modification DNA specificity domain
PLAFGAII_00246 2.1e-82
PLAFGAII_00247 0.0 hsdR 3.1.21.3 L Subunit R is required for both nuclease and ATPase activities, but not for modification
PLAFGAII_00248 1.9e-133 sdh 1.1.1.276, 1.1.1.313, 1.1.1.381 S Belongs to the short-chain dehydrogenases reductases (SDR) family
PLAFGAII_00249 6.9e-196 MA20_36090 S Protein of unknown function (DUF2974)
PLAFGAII_00250 6.1e-114 1.14.14.5 C COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PLAFGAII_00251 5.8e-152 5.2.1.8 G hydrolase
PLAFGAII_00252 1.3e-26 P Hemerythrin HHE cation binding domain protein
PLAFGAII_00253 5.8e-142 XK27_00880 3.4.17.14, 3.5.1.28 M Glycosyl hydrolase, family 25
PLAFGAII_00254 7.9e-82 ybaK S Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PLAFGAII_00255 7.3e-115 pgm6 5.4.2.11, 5.4.2.12 G Phosphoglycerate mutase
PLAFGAII_00257 5.2e-175 S hydrolase
PLAFGAII_00258 8.4e-23
PLAFGAII_00259 2.6e-135 M LysM domain
PLAFGAII_00260 2.4e-286 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
PLAFGAII_00261 3.7e-14
PLAFGAII_00262 8.7e-13
PLAFGAII_00263 8.1e-233 mntH P H( )-stimulated, divalent metal cation uptake system
PLAFGAII_00264 1.1e-33 XK27_12190 S protein conserved in bacteria
PLAFGAII_00266 1.1e-87 bioY S biotin synthase
PLAFGAII_00267 1.7e-251 yegQ O Peptidase U32
PLAFGAII_00268 6.8e-178 yegQ O Peptidase U32
PLAFGAII_00270 3e-67 ytxH S General stress protein
PLAFGAII_00271 3.7e-08 WQ51_05790 S protein containing a divergent version of the methyl-accepting chemotaxis-like domain
PLAFGAII_00272 2.6e-146 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PLAFGAII_00273 8.3e-168 hprK F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PLAFGAII_00274 2.2e-41 pspC KT PspC domain
PLAFGAII_00275 0.0 yhgF K Transcriptional accessory protein
PLAFGAII_00277 6e-155 XK27_03015 S permease
PLAFGAII_00278 8.4e-148 ycgQ S TIGR03943 family
PLAFGAII_00279 4.1e-171 S CRISPR-associated protein Csn2 subfamily St
PLAFGAII_00280 3.1e-53 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PLAFGAII_00281 1.6e-171 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PLAFGAII_00282 0.0 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
PLAFGAII_00283 8.2e-275 sulP P Sulfate permease and related transporters (MFS superfamily)
PLAFGAII_00284 8.4e-100
PLAFGAII_00285 3.4e-21 estA E GDSL-like Lipase/Acylhydrolase
PLAFGAII_00286 3.5e-90 S CAAX protease self-immunity
PLAFGAII_00287 4.7e-50
PLAFGAII_00289 3.3e-64 yqeB S Pyrimidine dimer DNA glycosylase
PLAFGAII_00290 3.7e-61 S Protein of unknown function (DUF1722)
PLAFGAII_00291 1.3e-19 M Bacterial lipoprotein
PLAFGAII_00292 7.5e-10
PLAFGAII_00293 3.5e-46
PLAFGAII_00294 2.9e-09 S CsbD-like
PLAFGAII_00295 5.5e-31 S Membrane
PLAFGAII_00296 2.3e-171 S Domain of unknown function (DUF389)
PLAFGAII_00297 2.8e-157 yegS 2.7.1.107 I Diacylglycerol kinase
PLAFGAII_00298 4.5e-126 ybbA S Putative esterase
PLAFGAII_00299 8.5e-174 fatB P COG0614 ABC-type Fe3 -hydroxamate transport system, periplasmic component
PLAFGAII_00300 7.1e-133 fecE 3.6.3.34 HP ABC transporter
PLAFGAII_00301 4.6e-159 fecD P Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PLAFGAII_00302 2.3e-123 V CAAX protease self-immunity
PLAFGAII_00303 9.2e-150 S Domain of unknown function (DUF4300)
PLAFGAII_00305 2.3e-108 cutC P Participates in the control of copper homeostasis
PLAFGAII_00306 5.8e-95 XK27_08140 K Bacterial regulatory proteins, tetR family
PLAFGAII_00307 3.2e-150 yitS S EDD domain protein, DegV family
PLAFGAII_00308 1.8e-225 tgt 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
PLAFGAII_00309 3.4e-14 rpmH J Ribosomal protein L34
PLAFGAII_00310 6.3e-102 1.6.5.2 S NADPH-quinone reductase (modulator of drug activity B)
PLAFGAII_00311 1.7e-105 K Transcriptional regulator
PLAFGAII_00312 1.2e-151 jag S RNA-binding protein
PLAFGAII_00313 9.7e-147 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PLAFGAII_00314 3.8e-54 rnpA 3.1.26.5 J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
PLAFGAII_00315 1e-262 argH 4.3.2.1 E Argininosuccinate lyase
PLAFGAII_00316 5.8e-230 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
PLAFGAII_00317 7.2e-130 fasA KT Response regulator of the LytR AlgR family
PLAFGAII_00318 2.3e-224 fasC 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00319 2.4e-210 hpk9 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00320 1.5e-150 hpk9 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00321 1.7e-230 2.7.13.3 T signal transduction protein with a C-terminal ATPase domain
PLAFGAII_00322 2.8e-271 gltX 6.1.1.17, 6.1.1.24 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PLAFGAII_00323 0.0 amiA E ABC transporter, substrate-binding protein, family 5
PLAFGAII_00324 1.4e-119 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
PLAFGAII_00325 3.7e-70 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PLAFGAII_00326 1.2e-50 S Protein of unknown function (DUF3397)
PLAFGAII_00327 9.2e-89 cah 4.2.1.1 P Reversible hydration of carbon dioxide
PLAFGAII_00328 1.6e-126 WQ51_05710 S Mitochondrial biogenesis AIM24
PLAFGAII_00329 1.4e-226 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PLAFGAII_00330 6.6e-73 3.5.1.19 Q hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
PLAFGAII_00331 8e-76 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
PLAFGAII_00332 6.3e-108 XK27_09620 S FMN reductase (NADPH) activity
PLAFGAII_00333 7.9e-230 XK27_09615 C reductase
PLAFGAII_00334 1.4e-139 fnt P Formate nitrite transporter
PLAFGAII_00335 1.8e-96 XK27_08585 S Psort location CytoplasmicMembrane, score
PLAFGAII_00336 5.7e-186 gpsA 1.1.1.94 I Glycerol-3-phosphate dehydrogenase
PLAFGAII_00337 1e-170 galU 2.7.7.9 M UTP-glucose-1-phosphate uridylyltransferase
PLAFGAII_00338 1.3e-117 gluP 3.4.21.105 O membrane protein (homolog of Drosophila rhomboid)
PLAFGAII_00339 1.6e-94 ygfA 6.3.3.2 H Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PLAFGAII_00340 6.7e-220 hipO 3.5.1.47 E Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
PLAFGAII_00341 5.3e-58 dapD 2.3.1.117, 2.3.1.89 E Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
PLAFGAII_00342 5.6e-138 S HAD hydrolase, family IA, variant
PLAFGAII_00343 2.5e-138 rrmA 2.1.1.187 Q methyltransferase
PLAFGAII_00347 3.3e-89 tadA 3.5.4.1, 3.5.4.33 FJ Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
PLAFGAII_00348 6.6e-66 ssb_2 L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PLAFGAII_00349 3.7e-117 S CAAX protease self-immunity
PLAFGAII_00350 5.1e-113 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PLAFGAII_00352 4.6e-54 ytpP 2.7.1.180, 5.3.4.1 CO Thioredoxin
PLAFGAII_00353 2.7e-08 XK27_10305 S Domain of unknown function (DUF4651)
PLAFGAII_00354 3.5e-202 pepA 3.4.11.7 G COG1363 Cellulase M and related proteins
PLAFGAII_00355 5.2e-131 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PLAFGAII_00356 4e-100 S CAAX amino terminal protease family protein
PLAFGAII_00358 2.5e-110 V CAAX protease self-immunity
PLAFGAII_00359 8.8e-27 lanR K sequence-specific DNA binding
PLAFGAII_00360 2.9e-221 ackA 2.7.2.1 F Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PLAFGAII_00361 5e-176 ytxK 2.1.1.72 L DNA methylase
PLAFGAII_00362 2e-12 comGF U Putative Competence protein ComGF
PLAFGAII_00363 5.4e-69 comGF U Competence protein ComGF
PLAFGAII_00364 5.3e-15 NU Type II secretory pathway pseudopilin
PLAFGAII_00365 1.4e-69 cglD NU Competence protein
PLAFGAII_00366 2.2e-43 comGC U Required for transformation and DNA binding
PLAFGAII_00367 2.2e-143 comGA NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PLAFGAII_00368 4.2e-175 comGA NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PLAFGAII_00369 1e-68 S cog cog4699
PLAFGAII_00370 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PLAFGAII_00371 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PLAFGAII_00372 0.0 pbp1B 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PLAFGAII_00373 1.6e-238 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PLAFGAII_00374 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PLAFGAII_00375 2e-97 hpt 2.4.2.8, 6.3.4.19 F Belongs to the purine pyrimidine phosphoribosyltransferase family
PLAFGAII_00376 2.4e-234 tilS 2.4.2.8, 6.3.4.19 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
PLAFGAII_00377 2.1e-233 XK27_09285 3.5.2.6 V Beta-lactamase enzyme family
PLAFGAII_00379 3e-60 divIC D Septum formation initiator
PLAFGAII_00380 2.2e-39 yabO J Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
PLAFGAII_00381 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PLAFGAII_00382 5.2e-104 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
PLAFGAII_00383 2.5e-203 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
PLAFGAII_00384 3.2e-29 yyzM S Protein conserved in bacteria
PLAFGAII_00385 4.7e-197 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PLAFGAII_00386 2.2e-254 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PLAFGAII_00387 3.2e-133 parB K Belongs to the ParB family
PLAFGAII_00388 1.5e-201 htrA 3.4.21.107 O Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain'
PLAFGAII_00389 6.8e-81 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PLAFGAII_00390 2.2e-117 yoaK S Protein of unknown function (DUF1275)
PLAFGAII_00394 0.0 XK27_10405 S Bacterial membrane protein YfhO
PLAFGAII_00395 1.1e-305 ybiT S abc transporter atp-binding protein
PLAFGAII_00396 1.6e-152 yvjA S membrane
PLAFGAII_00397 2.5e-189 trpS 6.1.1.2 J Tryptophanyl-tRNA synthetase
PLAFGAII_00398 5.8e-272 guaB 1.1.1.205 F Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
PLAFGAII_00399 5.7e-200 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PLAFGAII_00400 1.9e-57 yaaA S S4 domain protein YaaA
PLAFGAII_00401 8.7e-229 ymfF S Peptidase M16
PLAFGAII_00402 3.2e-234 ymfH S Peptidase M16
PLAFGAII_00403 1.6e-128 S sequence-specific DNA binding
PLAFGAII_00404 9.1e-90 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PLAFGAII_00405 2.7e-149 ecfA1 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PLAFGAII_00406 8.4e-151 ecfA2 3.6.3.55 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PLAFGAII_00407 3.3e-133 ecfT P Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PLAFGAII_00408 2.5e-61 lytE M LysM domain protein
PLAFGAII_00409 2.7e-62 isaA GH23 M Immunodominant staphylococcal antigen A
PLAFGAII_00410 3.3e-303 S Bacterial membrane protein, YfhO
PLAFGAII_00411 1.9e-219 mnmA 2.8.1.13 J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
PLAFGAII_00412 2.3e-97 yvbG U UPF0056 membrane protein
PLAFGAII_00413 0.0 gidA D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
PLAFGAII_00414 0.0 yybT T signaling protein consisting of a modified GGDEF domain and a DHH domain
PLAFGAII_00415 2.2e-73 rplI J binds to the 23S rRNA
PLAFGAII_00416 6.5e-246 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
PLAFGAII_00417 1.8e-47 veg S Biofilm formation stimulator VEG
PLAFGAII_00418 5.8e-109 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PLAFGAII_00419 1.1e-10
PLAFGAII_00420 7.7e-53 ypaA M Membrane
PLAFGAII_00421 2.3e-93 XK27_06935 K transcriptional regulator
PLAFGAII_00422 4.4e-157 XK27_06930 V domain protein
PLAFGAII_00423 2.7e-101 S Putative adhesin
PLAFGAII_00424 3.4e-58 XK27_06920 S Protein of unknown function (DUF1700)
PLAFGAII_00425 1.3e-51 K transcriptional regulator, PadR family
PLAFGAII_00426 4.1e-115 nudL L hydrolase
PLAFGAII_00429 7.4e-07
PLAFGAII_00430 0.0
PLAFGAII_00431 0.0 bcsA 2.4.1.12 GT2 M COG1215 Glycosyltransferases, probably involved in cell wall biogenesis
PLAFGAII_00432 1.6e-112 2.4.1.83 GT2 M COG0463, glycosyltransferases involved in cell wall biogenesis
PLAFGAII_00433 3.1e-55 2.3.1.128 K acetyltransferase
PLAFGAII_00434 4.5e-49 rplU J This protein binds to 23S rRNA in the presence of protein L20
PLAFGAII_00435 1.5e-46 rpmA J Belongs to the bacterial ribosomal protein bL27 family
PLAFGAII_00436 4.2e-132 ydaF_2 J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
PLAFGAII_00437 5e-63 WQ51_03320 S cog cog4835
PLAFGAII_00438 1.3e-146 XK27_08360 S EDD domain protein, DegV family
PLAFGAII_00439 1.5e-138 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
PLAFGAII_00440 4.6e-219 cca 2.7.7.19, 2.7.7.72 J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
PLAFGAII_00441 0.0 yfmR S abc transporter atp-binding protein
PLAFGAII_00442 1.7e-26 U response to pH
PLAFGAII_00443 9.6e-130 3.6.1.13, 3.6.1.55 F AdP-ribose pyrophosphatase
PLAFGAII_00444 7.5e-208 nadD 2.7.1.22, 2.7.7.1, 2.7.7.18, 3.6.1.55 H adenylyltransferase
PLAFGAII_00445 2.6e-255 gdhA 1.4.1.4 E Belongs to the Glu Leu Phe Val dehydrogenases family
PLAFGAII_00446 1.1e-282 S Psort location CytoplasmicMembrane, score
PLAFGAII_00447 6e-70 def_1 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
PLAFGAII_00448 1.7e-73 K DNA-binding transcription factor activity
PLAFGAII_00449 0.0 lmrA1 V abc transporter atp-binding protein
PLAFGAII_00450 0.0 lmrA2 V abc transporter atp-binding protein
PLAFGAII_00451 4.3e-112 K Acetyltransferase (GNAT) family
PLAFGAII_00452 1.3e-111 2.7.6.5 S Region found in RelA / SpoT proteins
PLAFGAII_00453 9.2e-116 T response regulator
PLAFGAII_00454 1.5e-209 sptS 2.7.13.3 T Histidine kinase
PLAFGAII_00455 1.7e-131 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
PLAFGAII_00456 6.4e-91 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
PLAFGAII_00457 1.9e-158 cvfB S Protein conserved in bacteria
PLAFGAII_00458 3.7e-34 yozE S Belongs to the UPF0346 family
PLAFGAII_00459 9.4e-130 sip M LysM domain protein
PLAFGAII_00460 1.2e-186 phoH T phosphate starvation-inducible protein PhoH
PLAFGAII_00464 0.0 metG 6.1.1.10, 6.1.1.20 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PLAFGAII_00465 6.2e-162 S reductase
PLAFGAII_00466 6.1e-168 K transcriptional regulator (lysR family)
PLAFGAII_00467 3.3e-103 S CAAX amino terminal protease family protein
PLAFGAII_00468 3.9e-268 2.7.13.3, 2.7.7.7, 5.4.99.21 D Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PLAFGAII_00469 1.2e-169 coiA 3.6.4.12 S Competence protein
PLAFGAII_00470 0.0 pepF E oligoendopeptidase F
PLAFGAII_00471 5.9e-214 oxlT P COG0477 Permeases of the major facilitator superfamily
PLAFGAII_00472 6.7e-119 yrrM 2.1.1.104 S O-Methyltransferase
PLAFGAII_00473 3e-167 prsA 3.1.3.16, 5.2.1.8 O peptidyl-prolyl cis-trans isomerase activity
PLAFGAII_00474 6e-85 yxjI S LURP-one-related
PLAFGAII_00475 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PLAFGAII_00476 3.6e-163 K sequence-specific DNA binding
PLAFGAII_00477 7.7e-09
PLAFGAII_00479 0.0 3.4.17.14, 3.5.1.28 M GBS Bsp-like repeat
PLAFGAII_00480 1.8e-133 agrA KT phosphorelay signal transduction system
PLAFGAII_00481 1.2e-228 2.7.13.3 T GHKL domain
PLAFGAII_00482 7.7e-151 I Alpha/beta hydrolase family
PLAFGAII_00483 3.1e-153 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PLAFGAII_00484 9.8e-144 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PLAFGAII_00485 0.0 pbp2b 3.4.16.4 M penicillin-binding protein
PLAFGAII_00486 1.3e-105 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PLAFGAII_00487 6e-149 licT K antiterminator
PLAFGAII_00488 4.6e-88 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PLAFGAII_00489 4.4e-65 dgkA 2.7.1.107, 2.7.1.66 M Diacylglycerol kinase
PLAFGAII_00490 1.3e-165 era M An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PLAFGAII_00491 2.4e-150 fpg 3.2.2.23, 4.2.99.18 L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
PLAFGAII_00492 1.2e-98 coaE 2.7.1.24, 3.2.2.23, 4.2.99.18 GH23 H Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PLAFGAII_00493 4.2e-220 mdtG EGP Major facilitator Superfamily
PLAFGAII_00494 2e-33 secG U Preprotein translocase subunit SecG
PLAFGAII_00495 0.0 rnr J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
PLAFGAII_00496 6.6e-81 smpB O the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
PLAFGAII_00497 3.7e-276 ppiB 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PLAFGAII_00498 1.3e-63 yugI 5.3.1.9 J RNA binding protein, contains ribosomal protein S1 domain
PLAFGAII_00499 1.1e-195 pepQ 3.4.13.9 E Belongs to the peptidase M24B family
PLAFGAII_00500 3.2e-181 ccpA K Catabolite control protein A
PLAFGAII_00501 2.9e-201 yyaQ S YjbR
PLAFGAII_00502 2.1e-197 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
PLAFGAII_00503 9e-75 yueI S Protein of unknown function (DUF1694)
PLAFGAII_00504 7.4e-247 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
PLAFGAII_00505 4.6e-25 WQ51_00785
PLAFGAII_00506 0.0 ltaS 2.7.8.20 M Belongs to the LTA synthase family
PLAFGAII_00507 3.2e-217 ywbD 2.1.1.191 J Methyltransferase
PLAFGAII_00508 5.8e-118 aroD 1.1.1.25, 4.2.1.10 E Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
PLAFGAII_00509 5.3e-161 aroE 1.1.1.25 E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PLAFGAII_00510 5.4e-203 aroB 2.7.1.71, 4.2.3.4 E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PLAFGAII_00511 4.2e-217 aroC 4.2.3.5 E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PLAFGAII_00512 1e-204 tyrA 1.3.1.12, 1.3.1.43 E prephenate dehydrogenase
PLAFGAII_00513 4.2e-53 yheA S Belongs to the UPF0342 family
PLAFGAII_00514 1.1e-167 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
PLAFGAII_00515 7.5e-236 aroA 1.3.1.12, 1.3.1.43, 2.5.1.19 E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
PLAFGAII_00516 4.5e-80 aroK 1.1.1.25, 2.7.1.71, 4.2.1.10, 4.2.3.4 F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PLAFGAII_00517 3.9e-153 pheA 4.2.1.51 E Prephenate dehydratase
PLAFGAII_00518 1.2e-245 msrR K Transcriptional regulator
PLAFGAII_00519 2.5e-151 ydiA P C4-dicarboxylate transporter malic acid transport
PLAFGAII_00520 1.9e-200 I acyl-CoA dehydrogenase
PLAFGAII_00521 2.7e-97 mip S hydroperoxide reductase activity
PLAFGAII_00522 3.2e-253 rumA 2.1.1.190 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PLAFGAII_00523 4.3e-22
PLAFGAII_00524 2e-217 EGP Transmembrane secretion effector
PLAFGAII_00525 1e-257 yheS_2 S ATPase components of ABC transporters with duplicated ATPase domains
PLAFGAII_00526 1.1e-49
PLAFGAII_00527 8.7e-60
PLAFGAII_00528 5.9e-55
PLAFGAII_00529 1.5e-36 uvrX 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PLAFGAII_00530 5.1e-78 P Mediates zinc uptake. May also transport other divalent cations
PLAFGAII_00531 1.1e-51 zupT P Mediates zinc uptake. May also transport other divalent cations
PLAFGAII_00532 1.6e-61 smtB K Transcriptional regulator
PLAFGAII_00533 0.0 cadA 3.6.3.3, 3.6.3.5 P COG2217 Cation transport ATPase
PLAFGAII_00535 2.6e-130 S Alpha/beta hydrolase family
PLAFGAII_00536 6.7e-136 S Domain of unknown function (DUF4336)
PLAFGAII_00537 1.3e-202 yeaN P transporter
PLAFGAII_00538 2.1e-149 V ABC transporter, ATP-binding protein
PLAFGAII_00539 4.8e-54 S ABC-2 family transporter protein
PLAFGAII_00540 0.0 mgtA 3.6.3.2 P COG0474 Cation transport ATPase
PLAFGAII_00541 1.1e-256 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PLAFGAII_00542 7.7e-97 nudF 3.6.1.13 L AdP-ribose pyrophosphatase
PLAFGAII_00543 4.6e-23
PLAFGAII_00544 7.7e-118 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PLAFGAII_00545 0.0 U protein secretion
PLAFGAII_00546 5.2e-192 dgs 2.4.1.208 GT4 M Glycosyltransferase, group 1 family protein
PLAFGAII_00547 1.3e-246 mgs 2.4.1.337 GT4 M Glycosyltransferase, group 1 family protein
PLAFGAII_00548 1.1e-12
PLAFGAII_00549 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PLAFGAII_00550 6.5e-152 S hydrolases or acyltransferases (alpha beta hydrolase superfamily)
PLAFGAII_00551 5.9e-194 S Protein of unknown function (DUF3114)
PLAFGAII_00552 4.1e-29 pspC KT PspC domain protein
PLAFGAII_00553 2.6e-118 yqfA K protein, Hemolysin III
PLAFGAII_00554 6.6e-78 K hmm pf08876
PLAFGAII_00555 7.7e-225 mvaA 1.1.1.34, 1.1.1.88, 2.3.1.9 C Belongs to the HMG-CoA reductase family
PLAFGAII_00556 1.7e-202 mvaS 2.3.3.10 I synthase
PLAFGAII_00557 2.7e-165 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PLAFGAII_00558 1.2e-88 folA 1.5.1.3, 1.5.1.47, 2.1.1.45, 3.5.4.12 H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PLAFGAII_00559 9.7e-22
PLAFGAII_00560 2.6e-225 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PLAFGAII_00561 3.9e-110 engB D Necessary for normal cell division and for the maintenance of normal septation
PLAFGAII_00562 5.8e-250 mmuP E amino acid
PLAFGAII_00563 3.9e-173 mmuM 1.5.1.20, 2.1.1.10 H Homocysteine
PLAFGAII_00564 2.2e-30 S Domain of unknown function (DUF1912)
PLAFGAII_00565 4.8e-13 L Helix-hairpin-helix DNA-binding motif class 1
PLAFGAII_00566 1.1e-107 plsY 2.3.1.15, 3.5.1.104 I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PLAFGAII_00567 0.0 parE 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PLAFGAII_00569 5.6e-12
PLAFGAII_00570 0.0 parC 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PLAFGAII_00571 2.4e-200 ilvE 2.6.1.42 E Aminotransferase
PLAFGAII_00572 3.7e-16 S Protein of unknown function (DUF2969)
PLAFGAII_00575 2.5e-204 rpsA 1.17.7.4 J ribosomal protein S1
PLAFGAII_00578 6e-106 S Domain of Unknown Function with PDB structure (DUF3862)
PLAFGAII_00579 5.4e-116 M Pfam SNARE associated Golgi protein
PLAFGAII_00580 1.3e-168 S oxidoreductase
PLAFGAII_00581 6.2e-48 XK27_09445 S Domain of unknown function (DUF1827)
PLAFGAII_00582 8.2e-84 mutT 3.5.4.33, 3.6.1.13, 3.6.1.55 L Belongs to the Nudix hydrolase family
PLAFGAII_00583 0.0 clpE O Belongs to the ClpA ClpB family
PLAFGAII_00584 4.1e-181 argF 2.1.3.3 E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PLAFGAII_00585 1e-34 ykuJ S protein conserved in bacteria
PLAFGAII_00586 1.7e-117 WQ51_01820 P Binding-protein-dependent transport system inner membrane component
PLAFGAII_00587 3.2e-130 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_00588 5.9e-77 feoA P FeoA domain protein
PLAFGAII_00589 0.0 feoB P transporter of a GTP-driven Fe(2 ) uptake system
PLAFGAII_00590 6.6e-08
PLAFGAII_00591 1.7e-38 yefM 2.3.1.15 D Antitoxin component of a toxin-antitoxin (TA) module
PLAFGAII_00592 1e-43 yoeB S Addiction module toxin, Txe YoeB family
PLAFGAII_00593 0.0 clpL O ATP-dependent Clp protease ATP-binding subunit
PLAFGAII_00594 4.1e-43
PLAFGAII_00596 2.5e-71 hit FG Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
PLAFGAII_00597 1.1e-130 ecsA V abc transporter atp-binding protein
PLAFGAII_00598 4.6e-175 ecsB U Bacterial ABC transporter protein EcsB
PLAFGAII_00599 7.1e-152 ytmP 2.7.1.89 M Phosphotransferase
PLAFGAII_00600 2e-120 trmB 2.1.1.297, 2.1.1.33 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
PLAFGAII_00602 1.4e-220 ytfP S Flavoprotein
PLAFGAII_00603 0.0 ilvD 4.2.1.9 E Belongs to the IlvD Edd family
PLAFGAII_00604 9.6e-64 XK27_02560 S cog cog2151
PLAFGAII_00605 9.1e-42 WQ51_02910 S Protein of unknown function, DUF536
PLAFGAII_00606 4.9e-105 dnaQ 2.7.7.7 L DNA polymerase III
PLAFGAII_00607 8.9e-125 K transcriptional regulator, MerR family
PLAFGAII_00608 0.0 V ABC transporter (Permease
PLAFGAII_00609 9.5e-124 V abc transporter atp-binding protein
PLAFGAII_00611 1.2e-43 yaaK S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PLAFGAII_00612 1.5e-49
PLAFGAII_00613 3.7e-45
PLAFGAII_00614 9e-47
PLAFGAII_00615 0.0 ctpE P E1-E2 ATPase
PLAFGAII_00616 2.9e-58
PLAFGAII_00617 3.8e-39 pchB 2.5.1.19, 4.2.1.10, 4.2.99.21, 5.4.99.5 E Chorismate mutase
PLAFGAII_00618 4.8e-257 trpE 4.1.3.27 EH Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
PLAFGAII_00619 7.2e-106 trpG 2.4.2.18, 2.6.1.85, 4.1.3.27 EH anthranilate
PLAFGAII_00620 1.7e-179 trpD 2.4.2.18, 4.1.3.27 F Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PLAFGAII_00621 9.4e-133 trpC 4.1.1.48, 5.3.1.24 E Belongs to the TrpC family
PLAFGAII_00622 1.1e-98 trpF 4.1.1.48, 4.2.1.160, 4.2.1.20, 5.3.1.24 E belongs to the TrpF family
PLAFGAII_00623 1.7e-229 trpB 4.2.1.20, 5.3.1.24 E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
PLAFGAII_00624 1.7e-142 trpA 4.2.1.20 E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
PLAFGAII_00625 1.7e-224 L the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_00626 3.5e-163 EGP Major facilitator Superfamily
PLAFGAII_00627 1.2e-73 copY K negative regulation of transcription, DNA-templated
PLAFGAII_00628 0.0 copA 3.6.3.54 P P-type ATPase
PLAFGAII_00629 1.4e-30 copZ 2.7.7.77 P Heavy metal-associated domain protein
PLAFGAII_00630 2.1e-191 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
PLAFGAII_00631 3e-114 papP P ABC transporter (Permease
PLAFGAII_00632 3e-106 P ABC transporter (Permease
PLAFGAII_00633 2.9e-134 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_00634 9.7e-155 cjaA ET ABC transporter substrate-binding protein
PLAFGAII_00638 6.6e-254 murF 6.3.2.10 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
PLAFGAII_00639 4e-116 ywaF S Integral membrane protein (intg_mem_TP0381)
PLAFGAII_00640 2.3e-300 prfC J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PLAFGAII_00641 4.2e-198 L Belongs to the 'phage' integrase family
PLAFGAII_00642 3.5e-28 S Domain of unknown function (DUF3173)
PLAFGAII_00643 3.4e-67
PLAFGAII_00644 7e-228 L Replication initiation factor
PLAFGAII_00645 7.2e-75
PLAFGAII_00646 1e-75 K Transcriptional
PLAFGAII_00647 3.6e-49 qacC P COG2076 Membrane transporters of cations and cationic drugs
PLAFGAII_00648 0.0 polC 2.7.7.7 L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PLAFGAII_00649 6.6e-237 pepS E COG2309 Leucyl aminopeptidase (aminopeptidase T)
PLAFGAII_00650 1.2e-35 XK27_02060 S Transglycosylase associated protein
PLAFGAII_00651 6.3e-70 badR K Transcriptional regulator, marr family
PLAFGAII_00652 3.3e-92 S reductase
PLAFGAII_00654 1.5e-286 ahpF O alkyl hydroperoxide reductase
PLAFGAII_00655 3.2e-106 ahpC 1.11.1.15 O alkyl hydroperoxide reductase
PLAFGAII_00656 7.4e-138 rpsB J Belongs to the universal ribosomal protein uS2 family
PLAFGAII_00657 1e-182 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PLAFGAII_00658 1.6e-82 S Putative small multi-drug export protein
PLAFGAII_00659 1.8e-75 ctsR K Belongs to the CtsR family
PLAFGAII_00660 0.0 clpC O Belongs to the ClpA ClpB family
PLAFGAII_00661 9.3e-231 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PLAFGAII_00662 3.4e-225 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PLAFGAII_00663 0.0 pnp 2.7.7.8 J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
PLAFGAII_00664 4.7e-140 S SseB protein N-terminal domain
PLAFGAII_00665 2.5e-112 cysE 2.3.1.30 E serine acetyltransferase
PLAFGAII_00667 9.9e-255 cysS 6.1.1.16, 6.3.1.13 J Belongs to the class-I aminoacyl-tRNA synthetase family
PLAFGAII_00668 2.7e-67 mrnC J Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PLAFGAII_00670 9.7e-135 trmH 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PLAFGAII_00671 6e-91 yacP S RNA-binding protein containing a PIN domain
PLAFGAII_00672 1e-151 degV S DegV family
PLAFGAII_00674 5.1e-22 K Transcriptional
PLAFGAII_00675 2e-79 rplM J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PLAFGAII_00676 1.2e-64 rpsI J Belongs to the universal ribosomal protein uS9 family
PLAFGAII_00677 3.4e-222 int2 L Phage integrase family
PLAFGAII_00678 1.1e-40 S Helix-turn-helix domain
PLAFGAII_00679 2.5e-189 L Replication initiation factor
PLAFGAII_00680 5.3e-37
PLAFGAII_00682 3.7e-81 K DNA-binding helix-turn-helix protein
PLAFGAII_00683 9.3e-28 pepE 3.4.13.21 E Belongs to the peptidase S51 family
PLAFGAII_00684 3.1e-294 Q synthase
PLAFGAII_00685 1.5e-185 bioF 2.3.1.29, 2.3.1.47, 2.3.1.50 E Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide
PLAFGAII_00692 2.6e-10
PLAFGAII_00698 4.9e-111 mreC M Involved in formation and maintenance of cell shape
PLAFGAII_00699 3.9e-82 mreD M rod shape-determining protein MreD
PLAFGAII_00700 2.3e-82 usp 3.5.1.28 CBM50 S CHAP domain
PLAFGAII_00701 1.2e-174 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PLAFGAII_00702 1.1e-217 araT 2.6.1.1 E Aminotransferase
PLAFGAII_00703 8e-140 recO L Involved in DNA repair and RecF pathway recombination
PLAFGAII_00704 9.2e-184 plsX 2.3.1.15 I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
PLAFGAII_00705 4.8e-30 acpP1 IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
PLAFGAII_00706 3.4e-129 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
PLAFGAII_00707 0.0 purL 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PLAFGAII_00708 5.1e-273 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PLAFGAII_00709 7.2e-189 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
PLAFGAII_00710 9.9e-100 purN 2.1.2.2 F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PLAFGAII_00711 3.6e-293 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
PLAFGAII_00712 3.9e-156 S CHAP domain
PLAFGAII_00713 4.3e-14 XK27_10545
PLAFGAII_00714 1.6e-20 D Plasmid stabilization system
PLAFGAII_00715 6.1e-238 purD 6.3.4.13 F Belongs to the GARS family
PLAFGAII_00716 5.3e-81 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PLAFGAII_00717 1.1e-200 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PLAFGAII_00718 1.1e-172 1.1.1.169 H Ketopantoate reductase
PLAFGAII_00720 2e-77 S KAP family P-loop domain
PLAFGAII_00721 1.4e-245 purB 4.3.2.2 F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PLAFGAII_00722 0.0 argS 6.1.1.19 J Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PLAFGAII_00723 3.1e-69 argR K Regulates arginine biosynthesis genes
PLAFGAII_00724 1.1e-56 ymcA 3.6.3.21 S Belongs to the UPF0342 family
PLAFGAII_00725 0.0 mutS L that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PLAFGAII_00726 3.9e-78 S Protein of unknown function (DUF3021)
PLAFGAII_00727 1.6e-68 K LytTr DNA-binding domain
PLAFGAII_00729 0.0 mutL L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PLAFGAII_00731 7.8e-103 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
PLAFGAII_00732 3.3e-103 tag 3.2.2.20 L 3-methyladenine DNA glycosylase
PLAFGAII_00733 1.5e-223 cinA 3.5.1.42 S Belongs to the CinA family
PLAFGAII_00734 6.8e-204 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PLAFGAII_00735 3.9e-66 spxA_2 1.20.4.1 P Belongs to the ArsC family
PLAFGAII_00736 2.3e-194 yjbB G Permeases of the major facilitator superfamily
PLAFGAII_00737 5.6e-150 Z012_04635 K Transcriptional activator, Rgg GadR MutR family
PLAFGAII_00738 3.3e-98 thiT S Thiamine transporter
PLAFGAII_00739 9.6e-62 yjqA S Bacterial PH domain
PLAFGAII_00740 3.1e-151 corA P CorA-like protein
PLAFGAII_00741 2.2e-245 cshA 3.6.4.13 JKL DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
PLAFGAII_00743 8.6e-41 yazA L endonuclease containing a URI domain
PLAFGAII_00744 2.3e-139 yabB 2.1.1.223 L Methyltransferase
PLAFGAII_00745 4.6e-142 nodB3 G deacetylase
PLAFGAII_00746 1.2e-140 plsC 2.3.1.51 I Acyltransferase
PLAFGAII_00747 3.7e-88 comEA L COG1555 DNA uptake protein and related DNA-binding proteins
PLAFGAII_00748 0.0 comEC S Competence protein ComEC
PLAFGAII_00749 1.5e-228 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PLAFGAII_00750 1.2e-97 XK27_07830 2.3.1.128 J Acetyltransferase GNAT Family
PLAFGAII_00751 7.3e-231 ytoI K transcriptional regulator containing CBS domains
PLAFGAII_00752 1.1e-166 map 3.4.11.18 E Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed
PLAFGAII_00753 8.4e-160 rbn E Belongs to the UPF0761 family
PLAFGAII_00754 3.7e-85 ccl S cog cog4708
PLAFGAII_00755 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PLAFGAII_00756 1.1e-184 yegS 2.7.1.107 I Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
PLAFGAII_00758 2.9e-171 yfjR K regulation of single-species biofilm formation
PLAFGAII_00760 4.9e-71 S QueT transporter
PLAFGAII_00761 4.5e-157 xth 3.1.11.2 L exodeoxyribonuclease III
PLAFGAII_00763 1.6e-106 XK27_00915 C COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PLAFGAII_00764 4.4e-38 XK27_00915 C COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PLAFGAII_00765 9.8e-18 yjdB S Domain of unknown function (DUF4767)
PLAFGAII_00766 6.2e-165 tehB 2.1.1.265 PQ tellurite resistance protein tehb
PLAFGAII_00767 7.2e-165 O protein import
PLAFGAII_00768 2.2e-123 agrA KT phosphorelay signal transduction system
PLAFGAII_00769 1.3e-211 2.7.13.3 T protein histidine kinase activity
PLAFGAII_00771 2.4e-43 rpsP J Belongs to the bacterial ribosomal protein bS16 family
PLAFGAII_00772 1.5e-36 ylqC L Belongs to the UPF0109 family
PLAFGAII_00773 5.3e-234 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PLAFGAII_00774 0.0 ydaO E amino acid
PLAFGAII_00775 7.7e-100 folE 3.5.4.16 F gtp cyclohydrolase
PLAFGAII_00776 1.5e-144 folP 2.5.1.15, 2.7.6.3 H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PLAFGAII_00777 1.5e-293 amy 3.2.1.1 GH13 G Belongs to the glycosyl hydrolase 13 family
PLAFGAII_00778 7.2e-59 folB 1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8 H Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PLAFGAII_00779 2.1e-77 folK 2.7.6.3, 4.1.2.25 H 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
PLAFGAII_00780 4.4e-166 murB 1.3.1.98 M cell wall formation
PLAFGAII_00781 5.2e-212 potA 3.6.3.30, 3.6.3.31 P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
PLAFGAII_00782 1.1e-139 potB P ABC-type spermidine putrescine transport system, permease component I
PLAFGAII_00783 2.3e-131 potC P ABC-type spermidine putrescine transport system, permease component II
PLAFGAII_00784 4.4e-205 potD P spermidine putrescine ABC transporter
PLAFGAII_00785 1.9e-145 XK27_08050 O HflC and HflK could regulate a protease
PLAFGAII_00786 1.5e-70 gloA 4.4.1.5 E Lactoylglutathione lyase
PLAFGAII_00787 6.3e-157 GK ROK family
PLAFGAII_00788 3e-209 serC 2.6.1.52 E Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PLAFGAII_00789 2.5e-103 wecD M Acetyltransferase (GNAT) domain
PLAFGAII_00790 2.2e-221 serA 1.1.1.399, 1.1.1.95 EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PLAFGAII_00791 1.3e-71 ogt 2.1.1.63, 3.2.2.20 L methylated-DNA-[protein]-cysteine S-methyltransferase activity
PLAFGAII_00792 1.6e-58 arsC 1.20.4.1 P Belongs to the ArsC family
PLAFGAII_00794 1e-55 lrgA S Effector of murein hydrolase LrgA
PLAFGAII_00795 1.6e-115 lrgB M Inhibits the expression or activity of extracellular murein hydrolases by interacting, possibly with LrgA, with the holin-like proteins CidA and or CidB. The LrgAB and CidAB proteins may affect the proton motive force of the membrane. May be involved in programmed cell death (PCD), possibly triggering PCD in response to antibiotics and environmental stresses
PLAFGAII_00796 7.4e-95 3.1.3.18 S IA, variant 1
PLAFGAII_00797 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PLAFGAII_00798 5.5e-298 ezrA D modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
PLAFGAII_00799 2.6e-112 serB 3.1.3.3 E phosphoserine phosphatase
PLAFGAII_00800 2.5e-07 N PFAM Uncharacterised protein family UPF0150
PLAFGAII_00801 1.8e-151 EG Permeases of the drug metabolite transporter (DMT) superfamily
PLAFGAII_00803 6e-61 ycaO O OsmC-like protein
PLAFGAII_00804 3.3e-62 paaI Q protein possibly involved in aromatic compounds catabolism
PLAFGAII_00805 2e-10 O ADP-ribosylglycohydrolase
PLAFGAII_00806 2e-132 rsuA 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PLAFGAII_00808 2e-247 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PLAFGAII_00809 1.7e-17 XK27_00735
PLAFGAII_00810 1.6e-134 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_00811 0.0 glnP P ABC-type amino acid transport signal transduction systems periplasmic component domain
PLAFGAII_00812 6.2e-163 S CAAX amino terminal protease family protein
PLAFGAII_00814 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
PLAFGAII_00815 1.8e-83 mutT 3.6.1.55 F Nudix family
PLAFGAII_00816 6.9e-134 ET ABC transporter
PLAFGAII_00817 5.9e-138 ET Belongs to the bacterial solute-binding protein 3 family
PLAFGAII_00818 7.5e-200 arcT 2.6.1.1 E Aminotransferase
PLAFGAII_00819 1e-129 gltS ET Belongs to the bacterial solute-binding protein 3 family
PLAFGAII_00820 3.2e-20 rpsU J Belongs to the bacterial ribosomal protein bS21 family
PLAFGAII_00821 9.3e-49 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
PLAFGAII_00822 0.0 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
PLAFGAII_00823 4e-201 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PLAFGAII_00824 3.4e-55 yitW K metal-sulfur cluster biosynthetic enzyme
PLAFGAII_00825 8.9e-170 yfdH GT2 M COG0463, glycosyltransferases involved in cell wall biogenesis
PLAFGAII_00826 1.2e-160 rfbD 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
PLAFGAII_00827 3.8e-227 amrA S membrane protein involved in the export of O-antigen and teichoic acid
PLAFGAII_00828 3.3e-183 M Glycosyltransferase group 2 family protein
PLAFGAII_00829 9.2e-127 arnC M group 2 family protein
PLAFGAII_00830 2.7e-42 S Uncharacterized conserved protein (DUF2304)
PLAFGAII_00831 2.6e-154 2.4.1.60 S Glycosyltransferase group 2 family protein
PLAFGAII_00832 6.9e-109
PLAFGAII_00833 0.0 rgpF GT2,GT4 M Glycosyltransferase like family 2
PLAFGAII_00834 3.6e-219 M Psort location CytoplasmicMembrane, score
PLAFGAII_00835 3.2e-223 GT4 M transferase activity, transferring glycosyl groups
PLAFGAII_00836 6.5e-223 rgpA GT4 M Domain of unknown function (DUF1972)
PLAFGAII_00837 4.3e-172 rgpB GT2 M Glycosyltransferase, group 2 family protein
PLAFGAII_00838 4.4e-141 rgpC GM Transport permease protein
PLAFGAII_00839 6.2e-224 rgpD 3.6.3.38 P Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system
PLAFGAII_00840 4.7e-275 rgpF M Rhamnan synthesis protein F
PLAFGAII_00841 3.1e-111 radC E Belongs to the UPF0758 family
PLAFGAII_00842 1.5e-129 puuD T peptidase C26
PLAFGAII_00843 5.6e-118 rex K Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PLAFGAII_00844 8.2e-60 XK27_04120 S Putative amino acid metabolism
PLAFGAII_00845 6.6e-204 iscS 2.8.1.7 E Cysteine desulfurase
PLAFGAII_00846 4.3e-175 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PLAFGAII_00847 5.4e-101 yjbK S Adenylate cyclase
PLAFGAII_00848 6.7e-119 yjbM 2.7.6.5 S Gtp pyrophosphokinase
PLAFGAII_00849 2.2e-151 nadK 2.7.1.23 H Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PLAFGAII_00850 2e-171 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
PLAFGAII_00851 7.9e-177 pta 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
PLAFGAII_00852 0.0 amiA E ABC transporter, substrate-binding protein, family 5
PLAFGAII_00853 5.5e-311 amiA E ABC transporter, substrate-binding protein, family 5
PLAFGAII_00854 1.1e-275 amiC P ABC transporter (Permease
PLAFGAII_00855 3.8e-165 amiD P ABC transporter (Permease
PLAFGAII_00856 4.6e-202 oppD P Belongs to the ABC transporter superfamily
PLAFGAII_00857 1e-170 oppF P Belongs to the ABC transporter superfamily
PLAFGAII_00858 1.3e-126 V Psort location CytoplasmicMembrane, score
PLAFGAII_00859 3.1e-119 skfE V abc transporter atp-binding protein
PLAFGAII_00860 5.6e-62 yvoA_1 K Transcriptional
PLAFGAII_00861 5e-145 supH S overlaps another CDS with the same product name
PLAFGAII_00862 8.2e-143 XK27_02985 S overlaps another CDS with the same product name
PLAFGAII_00863 1.8e-198 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
PLAFGAII_00864 8.8e-113 gmk 2.7.4.8 F Essential for recycling GMP and indirectly, cGMP
PLAFGAII_00865 3.6e-46 rpoZ 2.7.7.6 K DNA-directed 5'-3' RNA polymerase activity
PLAFGAII_00866 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PLAFGAII_00867 5.2e-170 fmt 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PLAFGAII_00868 1.7e-243 sun 2.1.1.176 J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PLAFGAII_00869 1e-134 stp 3.1.3.16 T phosphatase
PLAFGAII_00870 1.2e-293 prkC 2.7.11.1 KLT serine threonine protein kinase
PLAFGAII_00871 6.9e-104 kcsA P Ion transport protein
PLAFGAII_00872 1.7e-117 yvqF S Membrane
PLAFGAII_00873 5.7e-170 vraS 2.7.13.3 T Histidine kinase
PLAFGAII_00874 1.4e-113 vraR K Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PLAFGAII_00877 7.6e-94 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PLAFGAII_00878 1.9e-135 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
PLAFGAII_00879 1e-187 trxB1 1.18.1.2, 1.19.1.1 C Ferredoxin--NADP reductase
PLAFGAII_00880 0.0 ftsK D Belongs to the FtsK SpoIIIE SftA family
PLAFGAII_00881 0.0 pulA 3.2.1.41 CBM48,GH13 G belongs to the glycosyl hydrolase 13 family
PLAFGAII_00882 0.0 glgB 2.4.1.18, 3.2.1.141, 3.2.1.20 CBM48,GH13,GH31 G Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PLAFGAII_00883 3.5e-184 glgC 2.7.7.27 H Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
PLAFGAII_00884 6.4e-178 glgD 2.4.1.21, 2.7.7.27 GT5 G glucose-1-phosphate adenylyltransferase
PLAFGAII_00885 1.1e-283 glgA 2.4.1.21 GT5 G Synthesizes alpha-1,4-glucan chains using ADP-glucose
PLAFGAII_00886 0.0 glgP 2.4.1.1 GT35 G Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
PLAFGAII_00889 1.6e-185 nss M transferase activity, transferring glycosyl groups
PLAFGAII_00890 3.6e-16 S Accessory secretory protein Sec, Asp5
PLAFGAII_00891 2.6e-17 S Accessory secretory protein Sec Asp4
PLAFGAII_00892 1.8e-243 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PLAFGAII_00893 8.5e-279 gtf1 2.4.1.52 GT4 M An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PLAFGAII_00894 0.0 secA2 U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PLAFGAII_00895 1e-78 asp3 S Accessory Sec system protein Asp3
PLAFGAII_00896 5.8e-291 asp2 3.4.11.5 S Accessory Sec system protein Asp2
PLAFGAII_00897 6.1e-288 asp1 S Accessory Sec system protein Asp1
PLAFGAII_00898 1.6e-211 secY2 U Part of the accessory SecA2 SecY2 system specifically required for export of
PLAFGAII_00899 0.0 M family 8
PLAFGAII_00901 0.0 sbcC L ATPase involved in DNA repair
PLAFGAII_00902 5.5e-220 sbcD L SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
PLAFGAII_00903 0.0 GM domain, Protein
PLAFGAII_00904 0.0 zmpB M M26 IgA1-specific Metallo-endopeptidase C-terminal region
PLAFGAII_00905 8.2e-26 Q Protein conserved in bacteria
PLAFGAII_00906 2e-255 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PLAFGAII_00907 4.2e-294 gtf1 2.4.1.52 GT4 M An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PLAFGAII_00908 1.1e-223 thiI 2.8.1.4 H Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PLAFGAII_00909 5.4e-209 iscS2 2.8.1.7 E Cysteine sulfinate desulfinase cysteine desulfurase and related enzymes
PLAFGAII_00911 5.9e-225 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PLAFGAII_00912 7.9e-260 gor 1.8.1.7 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PLAFGAII_00913 0.0 fruA 2.7.1.202 G phosphotransferase system
PLAFGAII_00914 7.6e-166 pfkB 2.7.1.11, 2.7.1.56 H Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PLAFGAII_00915 1.4e-112 fruR K transcriptional
PLAFGAII_00916 1.2e-206 rny D Endoribonuclease that initiates mRNA decay
PLAFGAII_00917 4.7e-90 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
PLAFGAII_00918 5.1e-139 accA 2.1.3.15, 6.4.1.2 I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA
PLAFGAII_00919 4.7e-157 accD 2.1.3.15, 6.4.1.2 I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PLAFGAII_00920 8.3e-257 accC 6.3.4.14, 6.4.1.2 I An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
PLAFGAII_00921 1.5e-71 fabZ 3.5.1.108, 4.2.1.59 I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PLAFGAII_00922 1.6e-53 accB 2.3.1.12, 4.1.1.3 I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
PLAFGAII_00923 1.3e-232 fabF 2.3.1.179 I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
PLAFGAII_00924 1.1e-125 IQ reductase
PLAFGAII_00925 3.3e-161 fabD 2.3.1.39 I Malonyl CoA-acyl carrier protein transacylase
PLAFGAII_00926 9.9e-172 fabK 1.3.1.9 S 2-Nitropropane dioxygenase
PLAFGAII_00927 3.3e-30 acpP IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
PLAFGAII_00928 1.1e-170 fabH 2.3.1.180 I Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PLAFGAII_00929 5.2e-72 marR K Transcriptional regulator, MarR family
PLAFGAII_00930 3.1e-139 phaB 5.3.3.14, 5.3.3.18 I Belongs to the enoyl-CoA hydratase isomerase family
PLAFGAII_00931 8.1e-114 S HAD hydrolase, family IA, variant 3
PLAFGAII_00932 3.1e-256 lysC 2.7.2.4 E Belongs to the aspartokinase family
PLAFGAII_00933 3e-192 asnA 6.3.1.1 E aspartate--ammonia ligase
PLAFGAII_00934 6.5e-246 rumA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PLAFGAII_00935 3.1e-136 recX 2.4.1.337 GT4 S Regulatory protein RecX
PLAFGAII_00936 7.8e-102 ygaC J Belongs to the UPF0374 family
PLAFGAII_00937 7.3e-104 S Domain of unknown function (DUF1803)
PLAFGAII_00938 6.8e-162 ppaC 3.6.1.1 C inorganic pyrophosphatase
PLAFGAII_00945 5.7e-77 K Acetyltransferase (GNAT) domain
PLAFGAII_00946 3.3e-141 S ABC-2 family transporter protein
PLAFGAII_00947 9e-142 S ABC-2 family transporter protein
PLAFGAII_00948 2.7e-185 S abc transporter atp-binding protein
PLAFGAII_00949 1.3e-100 desR K COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
PLAFGAII_00950 9.1e-190 desK 2.7.13.3 T Histidine kinase
PLAFGAII_00951 2e-132 yvfS V ABC-2 type transporter
PLAFGAII_00952 1e-159 XK27_09825 V abc transporter atp-binding protein
PLAFGAII_00955 1.8e-165 yocS S Transporter
PLAFGAII_00956 1.2e-82 cdd 2.4.2.4, 3.5.4.5 F cytidine deaminase activity
PLAFGAII_00957 2.2e-115 yvfS V Transporter
PLAFGAII_00958 9e-156 XK27_09825 V abc transporter atp-binding protein
PLAFGAII_00959 4.1e-15 liaI KT membrane
PLAFGAII_00960 5.8e-30 liaI KT membrane
PLAFGAII_00961 6.1e-93 XK27_05000 S metal cluster binding
PLAFGAII_00962 0.0 V ABC transporter (permease)
PLAFGAII_00963 4.2e-133 macB2 V ABC transporter, ATP-binding protein
PLAFGAII_00964 1.6e-161 T Histidine kinase
PLAFGAII_00965 2.7e-123 KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PLAFGAII_00966 6.7e-99 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
PLAFGAII_00967 5.5e-223 pbuX F xanthine permease
PLAFGAII_00968 2.6e-278 V (ABC) transporter
PLAFGAII_00969 8.9e-145 K sequence-specific DNA binding
PLAFGAII_00970 3e-243 norM V Multidrug efflux pump
PLAFGAII_00972 5.7e-180 msrA 1.8.4.11, 1.8.4.12 O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PLAFGAII_00973 1.6e-13
PLAFGAII_00974 1.8e-30 T DNase/tRNase domain of colicin-like bacteriocin
PLAFGAII_00975 0.0 S Domain of unknown function DUF87
PLAFGAII_00976 7.4e-131 T ATPase. Has a role at an early stage in the morphogenesis of the spore coat
PLAFGAII_00977 1.5e-89 yybC
PLAFGAII_00978 2.1e-74 XK27_03610 K Gnat family
PLAFGAII_00979 1.5e-56 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PLAFGAII_00980 8.1e-28 rpmI J Belongs to the bacterial ribosomal protein bL35 family
PLAFGAII_00981 1e-85 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PLAFGAII_00982 4.3e-121 cmk 1.17.7.4, 2.5.1.19, 2.7.1.26, 2.7.4.25, 2.7.7.2, 6.3.2.1 F Belongs to the cytidylate kinase family. Type 1 subfamily
PLAFGAII_00983 9.4e-17 M LysM domain
PLAFGAII_00984 9.6e-86 ebsA S Family of unknown function (DUF5322)
PLAFGAII_00985 5.9e-230 pepT 3.4.11.4 E Cleaves the N-terminal amino acid of tripeptides
PLAFGAII_00986 0.0 lytC 3.4.17.14, 3.5.1.28 M N-acetylmuramoyl-L-alanine amidase
PLAFGAII_00987 3.3e-95 lepB 3.4.21.89 U Belongs to the peptidase S26 family
PLAFGAII_00988 1.5e-220 G COG0457 FOG TPR repeat
PLAFGAII_00989 1.8e-175 yubA S permease
PLAFGAII_00990 3.3e-91 mutX 3.6.1.55 F NTP pyrophosphohydrolases including oxidative damage repair enzymes
PLAFGAII_00991 7.3e-164 ftsX D Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation
PLAFGAII_00992 5.5e-124 ftsE D cell division ATP-binding protein FtsE
PLAFGAII_00993 5.7e-183 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PLAFGAII_00994 4.2e-206 queG 1.17.99.6 C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
PLAFGAII_00995 4.7e-154 yjjH S Calcineurin-like phosphoesterase
PLAFGAII_00996 6.1e-129 nfrA 1.5.1.38, 1.5.1.39 C nitroreductase
PLAFGAII_00997 0.0 pacL 3.6.3.8 P cation transport ATPase
PLAFGAII_00998 1.7e-66 ywiB S Domain of unknown function (DUF1934)
PLAFGAII_00999 5.1e-131 XK27_00120 2.4.2.3 F Phosphorylase superfamily
PLAFGAII_01000 1.3e-135 XK27_00115 2.3.1.128 K Acetyltransferase GNAT family
PLAFGAII_01001 5e-145 yidA S hydrolases of the HAD superfamily
PLAFGAII_01002 2.3e-226 murM 2.3.2.10, 2.3.2.16 V protein involved in methicillin resistance
PLAFGAII_01003 4.3e-56 S Protein of unknown function (DUF454)
PLAFGAII_01004 2.3e-153 vicX 3.1.26.11 S Metal-dependent hydrolases of the beta-lactamase superfamily I
PLAFGAII_01005 3.2e-220 vicK 2.7.13.3 T Histidine kinase
PLAFGAII_01006 3.8e-128 KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PLAFGAII_01007 0.0 rnjA S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PLAFGAII_01008 4.3e-33 ykzG S Belongs to the UPF0356 family
PLAFGAII_01009 3e-114 yeaZ 2.3.1.234 O COG1214, inactive homolog of metal-dependent proteases
PLAFGAII_01010 2.6e-71 rimI 2.3.1.128 K This enzyme acetylates the N-terminal alanine of ribosomal protein S18
PLAFGAII_01011 2.4e-184 tsaD 2.3.1.234 O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PLAFGAII_01012 8.8e-114 azlC E AzlC protein
PLAFGAII_01013 4.4e-47 azlD S branched-chain amino acid
PLAFGAII_01014 0.0 recD2 3.1.11.5 L DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
PLAFGAII_01015 6.1e-106 lepB 3.4.21.89 U Belongs to the peptidase S26 family
PLAFGAII_01016 2.9e-154 rnhC 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PLAFGAII_01017 9.3e-15 zapA D Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
PLAFGAII_01018 5.3e-90 cvpA S toxin biosynthetic process
PLAFGAII_01019 0.0 mutS2 L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PLAFGAII_01020 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PLAFGAII_01022 1.9e-33
PLAFGAII_01024 9.5e-214 mutY L A G-specific adenine glycosylase
PLAFGAII_01025 3.2e-42 XK27_05745
PLAFGAII_01026 3e-47 rpsF J Binds together with S18 to 16S ribosomal RNA
PLAFGAII_01027 2.5e-81 ssb L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PLAFGAII_01028 1.7e-35 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PLAFGAII_01030 1e-122 XK27_01040 S Protein of unknown function (DUF1129)
PLAFGAII_01031 1e-168 corA P COG0598 Mg2 and Co2 transporters
PLAFGAII_01032 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
PLAFGAII_01033 4.1e-256 noxE P NADH oxidase
PLAFGAII_01034 5.6e-294 yfmM S abc transporter atp-binding protein
PLAFGAII_01035 7.5e-81 XK27_01265 S ECF-type riboflavin transporter, S component
PLAFGAII_01036 1.1e-134 pdxK 2.7.1.35 H Belongs to the pyridoxine kinase family
PLAFGAII_01037 9.4e-81 S ECF-type riboflavin transporter, S component
PLAFGAII_01039 1.3e-235 XK27_08130 K Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
PLAFGAII_01040 7e-56 nrdD_1 1.1.98.6, 1.17.4.1 F Ribonucleoside-triphosphate reductase
PLAFGAII_01042 0.0 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PLAFGAII_01043 3.3e-34 paiA 2.3.1.57 K COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PLAFGAII_01044 5e-51 paiA 2.3.1.57 K COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PLAFGAII_01045 3.9e-198 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PLAFGAII_01046 3.8e-22 WQ51_00220 K Helix-turn-helix domain
PLAFGAII_01047 9.7e-92 S Protein of unknown function (DUF3278)
PLAFGAII_01048 0.0 smc D Required for chromosome condensation and partitioning
PLAFGAII_01049 2.5e-124 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
PLAFGAII_01050 6.6e-173 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PLAFGAII_01051 1.1e-198 asd 1.2.1.11 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PLAFGAII_01052 1.5e-123 alkD L DNA alkylation repair enzyme
PLAFGAII_01053 8.2e-285 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PLAFGAII_01054 3e-87 pat 2.3.1.183 M acetyltransferase
PLAFGAII_01055 1.8e-278 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PLAFGAII_01056 2.3e-279 opuD M Belongs to the BCCT transporter (TC 2.A.15) family
PLAFGAII_01057 5.9e-225 L Transposase
PLAFGAII_01058 2.1e-07
PLAFGAII_01059 2.1e-24 yozG K Transcriptional regulator
PLAFGAII_01060 2.4e-07 S Protein of unknown function (DUF2975)
PLAFGAII_01062 1.1e-56 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
PLAFGAII_01063 4.5e-214 XK27_05110 P Chloride transporter ClC family
PLAFGAII_01064 1.2e-37 pheA 1.3.1.12, 2.3.1.79, 4.2.1.51, 5.4.99.5 E Chorismate mutase
PLAFGAII_01065 1.9e-281 clcA P Chloride transporter, ClC family
PLAFGAII_01066 1e-75 fld C Flavodoxin
PLAFGAII_01067 2.8e-18 XK27_08880
PLAFGAII_01068 5.5e-127 XK27_08875 O Zinc-dependent metalloprotease
PLAFGAII_01069 9.5e-149 estA CE1 S Esterase
PLAFGAII_01070 1.6e-310 rnjB S An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PLAFGAII_01071 7.6e-135 XK27_08845 S abc transporter atp-binding protein
PLAFGAII_01072 2.6e-147 XK27_08840 S Belongs to the binding-protein-dependent transport system permease family
PLAFGAII_01073 1.1e-176 XK27_08835 S ABC transporter substrate binding protein
PLAFGAII_01074 1.7e-18 S Domain of unknown function (DUF4649)
PLAFGAII_01075 0.0 Q the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_01076 7.2e-79 3.4.17.14 M lysozyme activity
PLAFGAII_01077 1.8e-48 L COG3547 Transposase and inactivated derivatives
PLAFGAII_01078 7.5e-231 2.7.13.3 T GHKL domain
PLAFGAII_01079 1.3e-131 agrA KT Response regulator of the LytR AlgR family
PLAFGAII_01081 5.3e-74 L COG1943 Transposase and inactivated derivatives
PLAFGAII_01082 1.1e-70 2.7.13.3 T Histidine kinase
PLAFGAII_01083 8.8e-111 K Transcriptional regulatory protein, C terminal
PLAFGAII_01085 4.3e-48 6.3.5.4 E Asparagine synthase
PLAFGAII_01087 5.1e-24 S Transglutaminase-like superfamily
PLAFGAII_01088 3.8e-120 V abc transporter atp-binding protein
PLAFGAII_01089 3e-17
PLAFGAII_01091 4.3e-85 V ABC transporter, ATP-binding protein
PLAFGAII_01092 5.9e-36 K Helix-turn-helix
PLAFGAII_01093 4.8e-39 D LPXTG cell wall anchor motif
PLAFGAII_01095 1.3e-94 amiB 3.5.1.28 M N-Acetylmuramoyl-L-alanine amidase
PLAFGAII_01097 3.2e-70
PLAFGAII_01100 1.4e-44 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_01101 1.1e-142 peb1A ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PLAFGAII_01102 2.1e-115 gltJ P ABC transporter (Permease
PLAFGAII_01103 1.1e-110 tcyB_2 P ABC transporter (permease)
PLAFGAII_01104 1.1e-153 endA F DNA RNA non-specific endonuclease
PLAFGAII_01105 7.2e-26 epuA S DNA-directed RNA polymerase subunit beta
PLAFGAII_01106 2.1e-230 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PLAFGAII_01108 1.1e-194 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PLAFGAII_01109 4.9e-135 G Domain of unknown function (DUF4832)
PLAFGAII_01110 2.7e-83 S membrane
PLAFGAII_01111 3e-96 P VTC domain
PLAFGAII_01112 1.5e-221 cotH M CotH kinase protein
PLAFGAII_01113 2.6e-184 pelG M Putative exopolysaccharide Exporter (EPS-E)
PLAFGAII_01114 3.6e-271 pelF GT4 M Domain of unknown function (DUF3492)
PLAFGAII_01115 0.0 S Uncharacterised protein conserved in bacteria (DUF2194)
PLAFGAII_01116 4e-146
PLAFGAII_01117 5.1e-275 5.1.3.2 GM Psort location CytoplasmicMembrane, score
PLAFGAII_01118 1.2e-211 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PLAFGAII_01119 7.3e-172 birA 6.3.4.15 HK Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
PLAFGAII_01120 5.4e-303 dnaX 2.7.7.7 L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PLAFGAII_01121 4.4e-86 ytsP 1.8.4.14 T GAF domain-containing protein
PLAFGAII_01122 6.3e-160 miaA 2.5.1.75 J Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PLAFGAII_01123 6.5e-21 WQ51_02665 S Protein of unknown function (DUF3042)
PLAFGAII_01124 1.5e-16 S Domain of unknown function (DUF3173)
PLAFGAII_01125 2.7e-147 L Phage integrase SAM-like domain
PLAFGAII_01127 3.5e-101 XK27_00530 M CHAP domain protein
PLAFGAII_01128 9.9e-106 abiGI K Transcriptional regulator, AbiEi antitoxin
PLAFGAII_01129 9.3e-273 opuD M Belongs to the BCCT transporter (TC 2.A.15) family
PLAFGAII_01130 0.0 mdlB V abc transporter atp-binding protein
PLAFGAII_01131 0.0 lmrA V abc transporter atp-binding protein
PLAFGAII_01132 4.6e-199 queA 2.4.99.17 J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PLAFGAII_01133 5.8e-121 nagB 3.1.1.31, 3.5.99.6 G Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
PLAFGAII_01134 2.4e-51 S Protein conserved in bacteria
PLAFGAII_01135 1.5e-196 yceA S Belongs to the UPF0176 family
PLAFGAII_01136 3.9e-114 S VIT family
PLAFGAII_01137 4e-139 rsuA 5.4.99.19, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PLAFGAII_01138 4.4e-219 hipO 3.5.1.47 E COG1473 Metal-dependent amidase aminoacylase carboxypeptidase
PLAFGAII_01139 3.4e-200 ald 1.4.1.1 C Belongs to the AlaDH PNT family
PLAFGAII_01141 1e-145 E Alpha beta hydrolase
PLAFGAII_01142 1.3e-246 merA 1.16.1.1 C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PLAFGAII_01143 7.9e-152 mvk 1.1.1.88, 2.3.3.10, 2.7.1.36 I mevalonate kinase
PLAFGAII_01144 5.1e-173 mvaD 4.1.1.33 I diphosphomevalonate decarboxylase
PLAFGAII_01145 1.1e-178 mvaK2 2.7.1.36, 2.7.1.43, 2.7.4.2 I phosphomevalonate kinase
PLAFGAII_01146 2.3e-187 fni 1.1.1.88, 5.3.3.2 C Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
PLAFGAII_01147 1e-276 pyk 2.7.1.40, 2.7.7.4 G Belongs to the pyruvate kinase family
PLAFGAII_01148 2.6e-186 pfkA 2.7.1.11 F Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
PLAFGAII_01149 0.0 dnaE 2.7.7.7 L DNA polymerase
PLAFGAII_01150 1.1e-112 leuD 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PLAFGAII_01151 1.4e-275 leuC 4.2.1.33, 4.2.1.35 E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PLAFGAII_01152 1.1e-189 leuB 1.1.1.85 CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
PLAFGAII_01153 4.9e-290 leuA 2.3.3.13 E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PLAFGAII_01154 2.1e-131 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PLAFGAII_01155 1.4e-178 pyrD 1.3.1.14, 1.3.98.1 F Catalyzes the conversion of dihydroorotate to orotate
PLAFGAII_01157 6.3e-39 hup L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PLAFGAII_01158 5.2e-96 ypmS S Protein conserved in bacteria
PLAFGAII_01159 1.2e-155 ypmR E COG2755 Lysophospholipase L1 and related esterases
PLAFGAII_01160 5.3e-145 DegV S DegV family
PLAFGAII_01161 3.1e-298 recN L May be involved in recombinational repair of damaged DNA
PLAFGAII_01162 2.8e-73 argR K Regulates arginine biosynthesis genes
PLAFGAII_01163 2.2e-148 rrmJ 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
PLAFGAII_01164 6.4e-154 ispA 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 H Belongs to the FPP GGPP synthase family
PLAFGAII_01165 4.6e-29 xseB 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PLAFGAII_01166 6.2e-233 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PLAFGAII_01168 3.8e-119 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PLAFGAII_01169 2.1e-123 dnaD
PLAFGAII_01170 3e-181 metA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PLAFGAII_01171 4.9e-93 apt 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PLAFGAII_01172 0.0 recJ L Single-strand DNA-specific exonuclease, C terminal domain
PLAFGAII_01173 2.9e-64 GnaT 2.5.1.16 K acetyltransferase
PLAFGAII_01174 2.1e-32 Q Methyltransferase domain
PLAFGAII_01175 6.2e-80 Q Methyltransferase domain
PLAFGAII_01176 2e-135 XK27_05435 1.1.1.100 S Belongs to the short-chain dehydrogenases reductases (SDR) family
PLAFGAII_01177 5.9e-174 rnz 3.1.26.11 S Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
PLAFGAII_01178 2.9e-111 galT 2.7.7.12 G UDPglucose--hexose-1-phosphate uridylyltransferase
PLAFGAII_01179 5.4e-223 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PLAFGAII_01180 6.4e-236 rodA D Belongs to the SEDS family
PLAFGAII_01181 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01182 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01183 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01184 2.5e-173 XK27_08075 M glycosyl transferase family 2
PLAFGAII_01185 2.8e-97 S Carbohydrate-binding domain-containing protein Cthe_2159
PLAFGAII_01186 1.4e-144 P molecular chaperone
PLAFGAII_01187 1.2e-94 XK27_05505 S Psort location CytoplasmicMembrane, score
PLAFGAII_01189 9.1e-50 hisE 3.5.4.19, 3.6.1.31, 5.3.1.16 E phosphoribosyl-ATP diphosphatase activity
PLAFGAII_01190 1e-59 hisI 3.5.4.19, 3.5.4.25, 3.6.1.31, 5.3.1.16 E Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PLAFGAII_01191 4.7e-137 hisF 3.5.4.19, 3.6.1.31 E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
PLAFGAII_01192 4.5e-129 hisA 5.3.1.16 E 1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PLAFGAII_01193 6.1e-111 hisH E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
PLAFGAII_01194 3.9e-107 hisB 1.1.1.23, 2.6.1.9, 3.1.3.15, 4.2.1.19 E imidazoleglycerol-phosphate dehydratase
PLAFGAII_01195 7.8e-233 hisD 1.1.1.23, 1.1.1.308 E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
PLAFGAII_01196 8e-117 hisG 2.4.2.17 E Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity
PLAFGAII_01197 4.5e-180 hisZ 2.4.2.17, 6.1.1.21 E Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
PLAFGAII_01198 6.2e-191 hisC 2.6.1.9 E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PLAFGAII_01199 2.7e-59 XK27_08085
PLAFGAII_01200 4.7e-147 XK27_08080 3.1.1.53 G Exopolysaccharide biosynthesis protein
PLAFGAII_01201 3.3e-135 hisK 3.1.3.15 E Histidinol phosphatase and related hydrolases of the PHP family
PLAFGAII_01202 1.3e-114 ylfI S tigr01906
PLAFGAII_01203 1.2e-140 nagD 2.7.1.25, 3.1.3.41 G Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
PLAFGAII_01204 6.3e-142 fat 3.1.2.21 I Acyl-ACP thioesterase
PLAFGAII_01205 7.7e-216 hemN H Involved in the biosynthesis of porphyrin-containing compound
PLAFGAII_01206 1.9e-29 KT response to antibiotic
PLAFGAII_01208 2.8e-204 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PLAFGAII_01209 3.5e-111 rmlC 1.1.1.133, 5.1.3.13 M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
PLAFGAII_01210 2.4e-161 rfbA 2.7.7.24 M Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
PLAFGAII_01211 9.9e-255 S phospholipase Carboxylesterase
PLAFGAII_01212 5.5e-195 yurR 1.4.5.1 E oxidoreductase
PLAFGAII_01213 1.2e-141 zupT P Mediates zinc uptake. May also transport other divalent cations
PLAFGAII_01214 1.5e-141 yqfO 3.5.4.16 S Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PLAFGAII_01215 3.3e-121 trmK 2.1.1.217 S SAM-dependent methyltransferase
PLAFGAII_01216 1.8e-66 gtrA S GtrA-like protein
PLAFGAII_01217 3.7e-249 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PLAFGAII_01218 1.1e-162 ybbR S Protein conserved in bacteria
PLAFGAII_01219 7.9e-149 dacA 2.7.7.85 S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PLAFGAII_01220 1.4e-248 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Mur ligase, middle domain protein
PLAFGAII_01221 8.1e-148 cobQ S glutamine amidotransferase
PLAFGAII_01222 0.0 mprF 2.3.2.3 J Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PLAFGAII_01223 4.4e-132 pip 1.11.1.10 S Alpha beta hydrolase
PLAFGAII_01224 7.5e-62 CP_0600 3.5.4.2, 3.5.4.4 F Adenosine/AMP deaminase
PLAFGAII_01226 1.6e-39 MA20_06245 S yiaA/B two helix domain
PLAFGAII_01227 0.0 uup S abc transporter atp-binding protein
PLAFGAII_01228 3.1e-113 udk 2.7.1.48 F Cytidine monophosphokinase
PLAFGAII_01229 1.8e-177 yfmL 3.6.4.13 L DEAD DEAH box helicase
PLAFGAII_01230 3.5e-224 XK27_05680 6.3.2.2, 6.3.2.4 M carbamoylphosphate synthase large subunit
PLAFGAII_01231 2.7e-153 XK27_05675 S Esterase
PLAFGAII_01232 3.9e-161 XK27_05670 S Putative esterase
PLAFGAII_01233 1.5e-264 gapN 1.2.1.9 C Belongs to the aldehyde dehydrogenase family
PLAFGAII_01234 0.0 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PLAFGAII_01235 3e-38 ptsH G phosphocarrier protein Hpr
PLAFGAII_01236 1.5e-222 icd 1.1.1.42 C Isocitrate dehydrogenase
PLAFGAII_01237 1.3e-210 citZ 2.3.3.1 C Belongs to the citrate synthase family
PLAFGAII_01238 0.0 acnA 4.2.1.3 C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
PLAFGAII_01239 6.5e-34 nrdH O Glutaredoxin
PLAFGAII_01240 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PLAFGAII_01241 3.8e-184 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PLAFGAII_01242 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PLAFGAII_01243 5.5e-137 divIVA D Cell division initiation protein
PLAFGAII_01244 1.8e-142 ylmH S conserved protein, contains S4-like domain
PLAFGAII_01245 1.7e-30 yggT D integral membrane protein
PLAFGAII_01246 1.8e-99 sepF D cell septum assembly
PLAFGAII_01247 1.7e-122 ylmE S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PLAFGAII_01248 3.3e-234 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PLAFGAII_01249 2.8e-228 ftsA D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
PLAFGAII_01250 1.7e-130 divIB D Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
PLAFGAII_01251 2.3e-198 murG 2.4.1.227 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PLAFGAII_01252 6.1e-252 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PLAFGAII_01254 0.0 typA T GTP-binding protein TypA
PLAFGAII_01255 5.4e-178 glk 2.7.1.2 G Glucokinase
PLAFGAII_01256 7.1e-27 yqgQ S protein conserved in bacteria
PLAFGAII_01257 4.4e-79 perR P Belongs to the Fur family
PLAFGAII_01258 1.4e-84 dps P Belongs to the Dps family
PLAFGAII_01259 5.4e-105 pilD 3.4.23.43 NOU Type II secretory pathway prepilin signal peptidase PulO and related peptidases
PLAFGAII_01260 1.5e-160 3.5.2.6 V D-alanyl-D-alanine carboxypeptidase
PLAFGAII_01261 9.4e-112 sodA 1.15.1.1 C radicals which are normally produced within the cells and which are toxic to biological systems
PLAFGAII_01262 2.9e-185 holA 2.7.7.7 L DNA polymerase III delta subunit
PLAFGAII_01263 0.0 ppc 4.1.1.31 H Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PLAFGAII_01264 2.1e-64 S Domain of unknown function (DUF4430)
PLAFGAII_01265 2.1e-74 S Psort location CytoplasmicMembrane, score
PLAFGAII_01266 5.6e-127 sitB 3.6.3.35 P ABC transporter, ATP-binding protein
PLAFGAII_01267 8.7e-132 mtsC P ABC-type Mn2 Zn2 transport systems, permease components
PLAFGAII_01268 3.3e-172 sitA P Belongs to the bacterial solute-binding protein 9 family
PLAFGAII_01269 9.1e-113 sirR K iron dependent repressor
PLAFGAII_01270 3.4e-134 htpX O Belongs to the peptidase M48B family
PLAFGAII_01271 1.1e-90 lemA S LemA family
PLAFGAII_01272 6e-172 spd F DNA RNA non-specific endonuclease
PLAFGAII_01273 4.8e-33 2.4.1.21 GT5 M Right handed beta helix region
PLAFGAII_01274 1.6e-49 bta 1.8.1.8 CO cell redox homeostasis
PLAFGAII_01275 4.8e-59 L thioesterase
PLAFGAII_01276 9.5e-141 S Macro domain protein
PLAFGAII_01277 2.4e-50 trxA O Belongs to the thioredoxin family
PLAFGAII_01278 1.7e-70 yccU S CoA-binding protein
PLAFGAII_01279 1e-142 tatD L Hydrolase, tatd
PLAFGAII_01280 6.5e-99 rnmV 3.1.26.8 J Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PLAFGAII_01281 2.9e-154 ksgA 2.1.1.182 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
PLAFGAII_01283 9.2e-161 rsgA 3.1.3.100 G One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
PLAFGAII_01284 7.8e-120 rpe 5.1.3.1 G Belongs to the ribulose-phosphate 3-epimerase family
PLAFGAII_01285 2.3e-116 thiN 2.7.6.2 H thiamine pyrophosphokinase
PLAFGAII_01286 2.1e-169 rmuC S RmuC domain protein
PLAFGAII_01287 5.8e-177 cbf S 3'-5' exoribonuclease yhaM
PLAFGAII_01288 4e-142 purR 2.4.2.7 F operon repressor
PLAFGAII_01289 2.3e-69 rpsL J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PLAFGAII_01290 3.9e-81 rpsG J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
PLAFGAII_01291 0.0 fusA J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PLAFGAII_01292 7.1e-181 gap 1.2.1.12 C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
PLAFGAII_01293 1.6e-118
PLAFGAII_01294 5.8e-222 pgk 2.7.2.3, 5.3.1.1 F Belongs to the phosphoglycerate kinase family
PLAFGAII_01295 3e-87 S Fusaric acid resistance protein-like
PLAFGAII_01296 2.5e-62 glnR K Transcriptional regulator
PLAFGAII_01297 5.2e-264 glnA 6.3.1.2 E glutamine synthetase
PLAFGAII_01298 2.3e-113 pscB M CHAP domain protein
PLAFGAII_01300 0.0 M domain protein
PLAFGAII_01301 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
PLAFGAII_01302 8.9e-159
PLAFGAII_01303 8.9e-96 rimL 2.3.1.128, 5.2.1.8 J COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
PLAFGAII_01304 3.8e-102 S COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
PLAFGAII_01307 1.4e-14 coiA 3.6.4.12 S Competence protein
PLAFGAII_01308 2.9e-15 T peptidase
PLAFGAII_01309 9.7e-150 rarD S Transporter
PLAFGAII_01310 5.9e-152 thrB 2.7.1.39 E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
PLAFGAII_01311 2.6e-236 hom 1.1.1.3, 2.7.2.4 E homoserine dehydrogenase
PLAFGAII_01312 6.3e-133 yxkH G deacetylase
PLAFGAII_01313 1.8e-204 argD 2.6.1.11, 2.6.1.17 E acetylornithine aminotransferase
PLAFGAII_01314 1.1e-122 argB 2.7.2.8 E Belongs to the acetylglutamate kinase family. ArgB subfamily
PLAFGAII_01315 4.6e-219 argJ 2.3.1.1, 2.3.1.35, 2.7.2.8 E Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PLAFGAII_01316 5e-182 argC 1.2.1.38 E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PLAFGAII_01317 3.3e-222 mtnE 2.6.1.83 E mutations do not affect methionine salvage in vivo however
PLAFGAII_01318 4.4e-138 cnhA 3.5.1.3 S Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase
PLAFGAII_01319 9e-100 vanY 3.4.17.14, 3.5.1.28 M D-alanyl-D-alanine carboxypeptidase
PLAFGAII_01320 6.6e-50 ywrO S general stress protein
PLAFGAII_01321 8.3e-30 K sequence-specific DNA binding
PLAFGAII_01322 3.4e-78 3.4.21.89 S RDD family
PLAFGAII_01323 8.5e-78 mutT 3.6.1.55 F COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
PLAFGAII_01324 1.2e-151 S Protein of unknown function DUF262
PLAFGAII_01325 3.5e-202 S Protein of unknown function DUF262
PLAFGAII_01326 3.7e-131 L Integrase
PLAFGAII_01327 0.0 fruA 3.2.1.1, 3.2.1.26, 3.2.1.65, 3.2.1.80 GH13,GH32 G Belongs to the glycosyl hydrolase 32 family
PLAFGAII_01328 2.6e-147 sdaAA 4.3.1.17 E L-serine dehydratase
PLAFGAII_01329 1.5e-118 sdaAB 4.3.1.17 E L-serine dehydratase
PLAFGAII_01330 4.4e-129 yjjG 3.1.3.102, 3.1.3.104, 3.1.3.5, 3.8.1.2 E hydrolase
PLAFGAII_01331 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
PLAFGAII_01332 1.2e-36 P (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
PLAFGAII_01333 1.5e-77 hmpT S cog cog4720
PLAFGAII_01334 3.1e-136 thiD 2.7.1.35, 2.7.1.49, 2.7.4.7 H phosphomethylpyrimidine kinase
PLAFGAII_01335 1e-139 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
PLAFGAII_01336 4.2e-193 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
PLAFGAII_01337 0.0 dnaK O Heat shock 70 kDa protein
PLAFGAII_01338 8.2e-64 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PLAFGAII_01339 3.7e-185 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
PLAFGAII_01340 7.2e-101 acmA 3.2.1.17, 3.4.17.14, 3.5.1.28 NU Muramidase (Flagellum-specific)
PLAFGAII_01341 4.8e-140 vanY 3.4.17.14 M D-alanyl-D-alanine carboxypeptidase
PLAFGAII_01342 4.3e-132 ais G Phosphoglycerate mutase
PLAFGAII_01343 2.3e-243 XK27_08635 S UPF0210 protein
PLAFGAII_01344 6.1e-39 gcvR T UPF0237 protein
PLAFGAII_01345 3.3e-233 capA M Bacterial capsule synthesis protein
PLAFGAII_01346 8.6e-148 srtB 3.4.22.70 S Sortase family
PLAFGAII_01348 1.5e-29 K Helix-turn-helix domain
PLAFGAII_01349 1.3e-17
PLAFGAII_01350 1.3e-99 2.3.1.128 K Acetyltransferase GNAT Family
PLAFGAII_01351 5.9e-288 S Protein of unknown function (DUF3114)
PLAFGAII_01353 0.0 gshF 6.3.2.2, 6.3.2.29, 6.3.2.30, 6.3.2.4 H Belongs to the glutamate--cysteine ligase type 1 family
PLAFGAII_01354 9.7e-295 V abc transporter atp-binding protein
PLAFGAII_01355 0.0 V abc transporter atp-binding protein
PLAFGAII_01356 8.2e-189 XK27_10075 S abc transporter atp-binding protein
PLAFGAII_01357 1.7e-10
PLAFGAII_01358 6.2e-31 GM domain, Protein
PLAFGAII_01359 6.5e-293 MA20_06650 IQ Polyketide synthase dehydratase
PLAFGAII_01360 1.6e-26 acpT 2.7.8.7 H lysine biosynthetic process via aminoadipic acid
PLAFGAII_01361 7.8e-110 cylA V AAA domain, putative AbiEii toxin, Type IV TA system
PLAFGAII_01362 2.7e-96 cylB V ABC-2 type transporter
PLAFGAII_01363 1.4e-62 K WHG domain
PLAFGAII_01364 4.7e-17 K Transcriptional regulator
PLAFGAII_01365 1.1e-19 K Transcriptional regulator
PLAFGAII_01366 1.8e-96 1.6.5.2 S NADPH-quinone reductase (modulator of drug activity B)
PLAFGAII_01372 3.3e-120 GM domain, Protein
PLAFGAII_01374 0.0 prtA 3.2.1.23 O Belongs to the peptidase S8 family
PLAFGAII_01375 9.5e-86 sigH K DNA-templated transcription, initiation
PLAFGAII_01376 1.6e-135 ykuT M mechanosensitive ion channel
PLAFGAII_01377 5.2e-229 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
PLAFGAII_01378 1.3e-70 rpoE K Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
PLAFGAII_01379 7.6e-310 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
PLAFGAII_01380 5.5e-83 XK27_03960 S Protein of unknown function (DUF3013)
PLAFGAII_01381 3.9e-75 mutT3 3.6.1.13, 3.6.1.55 L NUDIX domain
PLAFGAII_01382 1.2e-139 2.7.7.7 L Domain of unknown function (DUF4357)
PLAFGAII_01383 2.2e-176 prmA J Ribosomal protein L11 methyltransferase
PLAFGAII_01384 7.2e-130 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
PLAFGAII_01385 0.0 cpdB 3.1.3.6, 3.1.4.16 F Belongs to the 5'-nucleotidase family
PLAFGAII_01386 3.1e-83 nrdI F Belongs to the NrdI family
PLAFGAII_01387 0.0 relA 2.7.6.5 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PLAFGAII_01388 2.2e-73 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
PLAFGAII_01389 0.0 dex 3.2.1.11 GH66 G Glycosyl hydrolase family 66
PLAFGAII_01390 8.7e-237 ilvA 4.3.1.19 E Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PLAFGAII_01391 3.3e-112 def 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
PLAFGAII_01392 1.3e-111 fnr5 K Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
PLAFGAII_01393 1.7e-189 yhjX P Major Facilitator
PLAFGAII_01394 9.2e-43 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PLAFGAII_01395 2.8e-84 V VanZ like family
PLAFGAII_01396 9e-180 D nuclear chromosome segregation
PLAFGAII_01397 5e-123 glnQ E abc transporter atp-binding protein
PLAFGAII_01398 2.7e-272 glnP P ABC transporter
PLAFGAII_01399 1.5e-152 uppP 3.6.1.27 V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
PLAFGAII_01400 4.8e-18 S Protein of unknown function (DUF3021)
PLAFGAII_01401 1.7e-126 mecA NOT Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
PLAFGAII_01402 3.9e-183 tagO 2.7.8.33, 2.7.8.35 M transferase
PLAFGAII_01403 1.7e-137 sufC O ABC-type transport system involved in Fe-S cluster assembly, ATPase component
PLAFGAII_01404 9.1e-234 sufD O assembly protein SufD
PLAFGAII_01405 5.9e-238 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PLAFGAII_01406 9.4e-74 nifU C SUF system FeS assembly protein, NifU family
PLAFGAII_01407 2.9e-273 sufB O assembly protein SufB
PLAFGAII_01408 4.7e-26
PLAFGAII_01409 1e-156 hslO O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PLAFGAII_01410 6.2e-182 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PLAFGAII_01411 1.6e-71 adcR K transcriptional
PLAFGAII_01412 5.4e-135 adcC 3.6.3.35 P ABC transporter, ATP-binding protein
PLAFGAII_01413 6.6e-129 adcB P ABC transporter (Permease
PLAFGAII_01414 4e-162 mleP2 S Transporter, auxin efflux carrier (AEC) family protein
PLAFGAII_01415 0.0 ptsG 2.7.1.199, 2.7.1.201, 2.7.1.208, 2.7.1.211 G pts system
PLAFGAII_01416 4.6e-154 rgfB 3.1.3.90 L Endonuclease/Exonuclease/phosphatase family
PLAFGAII_01417 4.2e-253 pgi 5.3.1.9 G Belongs to the GPI family
PLAFGAII_01418 1.4e-142 IQ Belongs to the short-chain dehydrogenases reductases (SDR) family
PLAFGAII_01419 0.0 srlM 2.7.1.202, 2.7.1.204 GKT Mga helix-turn-helix domain
PLAFGAII_01420 6.8e-84 gutM K phosphoenolpyruvate-dependent sugar phosphotransferase system
PLAFGAII_01421 1.1e-95 srlA G PTS system glucitol sorbitol-specific
PLAFGAII_01422 3.8e-179 srlE 2.7.1.198 G PTS sorbitol transporter subunit IIB
PLAFGAII_01423 4.2e-59 srlB 2.7.1.198 G sorbitol-specific, IIA component
PLAFGAII_01424 8.1e-16 tnp* L An automated process has identified a potential problem with this gene model
PLAFGAII_01425 9.2e-59 L MULE transposase domain
PLAFGAII_01426 1.1e-108 L Transposase IS116 IS110 IS902
PLAFGAII_01427 1.3e-305 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PLAFGAII_01428 8.2e-219 L the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_01429 1.4e-153 Z012_04635 K sequence-specific DNA binding
PLAFGAII_01430 2.8e-277 V ABC transporter
PLAFGAII_01431 6.1e-126 yeeN K transcriptional regulatory protein
PLAFGAII_01432 5.9e-47 yajC U protein transport
PLAFGAII_01433 5.3e-141 uppS 2.5.1.31 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PLAFGAII_01434 7.2e-144 cdsA 2.7.7.41 S Belongs to the CDS family
PLAFGAII_01435 1.1e-228 rseP 3.4.21.107, 3.4.21.116 M zinc metalloprotease
PLAFGAII_01436 0.0 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
PLAFGAII_01437 0.0 WQ51_06230 S ABC transporter substrate binding protein
PLAFGAII_01438 6.8e-142 cmpC S abc transporter atp-binding protein
PLAFGAII_01439 4.9e-42 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PLAFGAII_01440 1.5e-286 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
PLAFGAII_01442 3.6e-43
PLAFGAII_01443 7.6e-55 S TM2 domain
PLAFGAII_01444 1.1e-161 rluA 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PLAFGAII_01445 0.0 pbp2A 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PLAFGAII_01446 2.8e-24 secE U Belongs to the SecE SEC61-gamma family
PLAFGAII_01447 2.4e-95 nusG K Participates in transcription elongation, termination and antitermination
PLAFGAII_01448 1.2e-72 3.1.3.27, 3.1.3.4, 3.1.3.81, 3.6.1.27 I phosphatidate phosphatase activity
PLAFGAII_01449 4e-142 cof S Sucrose-6F-phosphate phosphohydrolase
PLAFGAII_01450 1.9e-133 glcR K transcriptional regulator (DeoR family)
PLAFGAII_01451 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
PLAFGAII_01452 7.6e-74 K helix_turn_helix multiple antibiotic resistance protein
PLAFGAII_01453 7.3e-234 S COG1073 Hydrolases of the alpha beta superfamily
PLAFGAII_01454 2.4e-153 cylA V abc transporter atp-binding protein
PLAFGAII_01455 4.5e-136 cylB V ABC-2 type transporter
PLAFGAII_01456 7.6e-74 K COG3279 Response regulator of the LytR AlgR family
PLAFGAII_01457 8.9e-32 S Protein of unknown function (DUF3021)
PLAFGAII_01458 9.6e-124 mta K Transcriptional
PLAFGAII_01459 4.7e-120 yhcA V abc transporter atp-binding protein
PLAFGAII_01460 3.9e-216 macB_2 V FtsX-like permease family
PLAFGAII_01461 3.3e-272 pncB 6.3.4.21 H Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PLAFGAII_01462 2.2e-148 nadE 6.3.1.5 H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
PLAFGAII_01463 1.6e-71 yhaI S Protein of unknown function (DUF805)
PLAFGAII_01464 1.4e-253 pepC 3.4.22.40 E aminopeptidase
PLAFGAII_01465 0.0 ponA 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PLAFGAII_01466 4.3e-109 recU L Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
PLAFGAII_01467 2.4e-92 ypsA S Belongs to the UPF0398 family
PLAFGAII_01468 7.3e-50 gpsB D Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
PLAFGAII_01469 1.6e-221 rlmL 2.1.1.173, 2.1.1.264 L Belongs to the methyltransferase superfamily
PLAFGAII_01470 2.8e-277 mapZ D Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning
PLAFGAII_01471 0.0 snf 2.7.11.1 L Superfamily II DNA RNA helicases, SNF2 family'
PLAFGAII_01472 4.8e-22
PLAFGAII_01473 3.4e-255 mpl 6.3.2.4, 6.3.2.45, 6.3.2.8 M Belongs to the MurCDEF family
PLAFGAII_01474 4.2e-86 XK27_09675 K histone acetyltransferase HPA2 and related acetyltransferases
PLAFGAII_01475 1.5e-299 mltG ADL Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PLAFGAII_01476 1.2e-77 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PLAFGAII_01477 1.7e-165 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PLAFGAII_01478 6e-45 acyP 3.6.1.7 C Belongs to the acylphosphatase family
PLAFGAII_01479 1.5e-127 spoU 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PLAFGAII_01480 7.3e-94 XK27_09705 6.1.1.14 S HD superfamily hydrolase
PLAFGAII_01481 2.2e-101 ybhL S Belongs to the BI1 family
PLAFGAII_01482 5.5e-12 ycdA S Domain of unknown function (DUF4352)
PLAFGAII_01483 9e-242 lysA 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
PLAFGAII_01484 1.8e-90 K transcriptional regulator
PLAFGAII_01485 1.6e-36 yneF S UPF0154 protein
PLAFGAII_01486 3.4e-149 murI 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
PLAFGAII_01487 1.9e-183 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PLAFGAII_01488 3.9e-98 XK27_09740 S Phosphoesterase
PLAFGAII_01489 8.3e-87 ykuL S CBS domain
PLAFGAII_01490 4.2e-133 xerD L tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site
PLAFGAII_01491 7.6e-121 scpA D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PLAFGAII_01492 2.6e-95 scpB D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PLAFGAII_01493 3.4e-132 rluB 5.4.99.19, 5.4.99.21, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PLAFGAII_01494 1.4e-13 yidD M Could be involved in insertion of integral membrane proteins into the membrane
PLAFGAII_01495 7.9e-258 trkH P Cation transport protein
PLAFGAII_01496 7.2e-245 trkA P Potassium transporter peripheral membrane component
PLAFGAII_01497 1.8e-95 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
PLAFGAII_01498 5.6e-87 ribU U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
PLAFGAII_01499 1.1e-89 bcrC 3.6.1.27 I Membrane-associated phospholipid phosphatase
PLAFGAII_01500 2.7e-155 K sequence-specific DNA binding
PLAFGAII_01501 2.3e-214 3.5.1.28 NU GBS Bsp-like repeat
PLAFGAII_01502 5.1e-15
PLAFGAII_01505 5.6e-25 bipA S protein secretion
PLAFGAII_01506 2.5e-110 tcyB_2 P ABC transporter (permease)
PLAFGAII_01507 1.9e-116 gltJ P ABC transporter (Permease
PLAFGAII_01508 1.4e-145 peb1A ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PLAFGAII_01509 5.6e-46 glnQ 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_01510 1.7e-221 L transposase IS116 IS110 IS902 family
PLAFGAII_01513 8e-14
PLAFGAII_01514 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01515 0.0 3.5.1.28 M domain protein
PLAFGAII_01516 4.2e-138 S N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity
PLAFGAII_01517 5.1e-89 maa 2.3.1.79 GK Maltose O-acetyltransferase
PLAFGAII_01518 1.8e-66 rmaI K Transcriptional regulator, MarR family
PLAFGAII_01519 3e-238 EGP Major facilitator Superfamily
PLAFGAII_01520 1.7e-131 XK27_00785 S CAAX protease self-immunity
PLAFGAII_01521 1.4e-119 mleR K malolactic fermentation system
PLAFGAII_01522 1.2e-47 K Helix-turn-helix
PLAFGAII_01523 2.2e-309 sfcA 1.1.1.38, 4.1.1.101 C malic enzyme
PLAFGAII_01524 3.1e-162 mleP S auxin efflux carrier
PLAFGAII_01525 0.0 mprF 2.3.2.3 S Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PLAFGAII_01527 5.3e-225 S dextransucrase activity
PLAFGAII_01528 0.0 M Putative cell wall binding repeat
PLAFGAII_01529 0.0 S dextransucrase activity
PLAFGAII_01530 1.5e-176 S dextransucrase activity
PLAFGAII_01531 1.6e-293 S dextransucrase activity
PLAFGAII_01532 3.1e-156 pdxS 4.3.3.6 H Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
PLAFGAII_01533 2.1e-100 pdxT 4.3.3.6 H Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
PLAFGAII_01534 0.0 S dextransucrase activity
PLAFGAII_01535 2.4e-233 tcdB S dextransucrase activity
PLAFGAII_01536 3.7e-85 S dextransucrase activity
PLAFGAII_01537 0.0 S dextransucrase activity
PLAFGAII_01538 0.0 S dextransucrase activity
PLAFGAII_01539 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01540 1.7e-258 S dextransucrase activity
PLAFGAII_01541 0.0 2.4.1.5 GH13 M KxYKxGKxW signal domain protein
PLAFGAII_01542 8.2e-118 yhfC S Putative membrane peptidase family (DUF2324)
PLAFGAII_01543 5.5e-43 czrA K helix_turn_helix, Arsenical Resistance Operon Repressor
PLAFGAII_01544 1.8e-14 S integral membrane protein
PLAFGAII_01545 2.4e-08 S Enterocin A Immunity
PLAFGAII_01546 0.0 pepO 3.4.24.71 O Peptidase family M13
PLAFGAII_01547 3.2e-34 S Immunity protein 41
PLAFGAII_01548 1.6e-133 T Ser Thr phosphatase family protein
PLAFGAII_01549 2.6e-225 thrE K Psort location CytoplasmicMembrane, score
PLAFGAII_01550 2.3e-176 dhaK 2.7.1.121, 2.7.1.28, 2.7.1.29, 4.6.1.15 G Dihydroxyacetone kinase
PLAFGAII_01551 3.4e-95 dhaL 2.7.1.121 S Dihydroxyacetone kinase
PLAFGAII_01552 4.8e-58 dhaM 2.7.1.121 S dihydroxyacetone kinase, phosphotransfer subunit
PLAFGAII_01553 3.1e-181 XK27_10475 S oxidoreductase
PLAFGAII_01554 1.9e-195 gldA 1.1.1.6 C glycerol dehydrogenase
PLAFGAII_01556 2.1e-282 XK27_07020 S Belongs to the UPF0371 family
PLAFGAII_01557 5.7e-212 vex1 V Efflux ABC transporter, permease protein
PLAFGAII_01558 3.3e-107 vex2 V abc transporter atp-binding protein
PLAFGAII_01559 2.6e-234 vex3 V Efflux ABC transporter, permease protein
PLAFGAII_01560 9.8e-115 K Response regulator receiver domain protein
PLAFGAII_01561 3.8e-227 vncS 2.7.13.3 T Histidine kinase
PLAFGAII_01562 6.6e-306 dexB 3.2.1.10, 3.2.1.70 GH13 G COG0366 Glycosidases
PLAFGAII_01563 4.8e-117 2.1.1.72 V site-specific DNA-methyltransferase (adenine-specific) activity
PLAFGAII_01564 0.0 L DEAD-like helicases superfamily
PLAFGAII_01565 3.1e-107 S Abortive infection C-terminus
PLAFGAII_01566 1.9e-219
PLAFGAII_01567 4e-192 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PLAFGAII_01568 2.7e-157 yvgN C reductase
PLAFGAII_01569 1.9e-30 XK27_10490
PLAFGAII_01570 4e-40 DJ nuclease activity
PLAFGAII_01571 1.1e-100 yoaK S Protein of unknown function (DUF1275)
PLAFGAII_01572 1.9e-107 drgA C nitroreductase
PLAFGAII_01573 1.9e-121 T Xre family transcriptional regulator
PLAFGAII_01574 1.7e-130 T PhoQ Sensor
PLAFGAII_01575 9.4e-45 S Domain of unknown function (DUF4352)
PLAFGAII_01576 9.9e-127 S ABC-2 family transporter protein
PLAFGAII_01577 9.1e-167 bcrA V abc transporter atp-binding protein
PLAFGAII_01578 5.3e-229 pts13C G The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PLAFGAII_01579 1.8e-153 E Alpha/beta hydrolase of unknown function (DUF915)
PLAFGAII_01580 2.5e-77 ywnA K Transcriptional regulator
PLAFGAII_01581 2.7e-152 1.13.11.2 S glyoxalase
PLAFGAII_01582 4.1e-107 XK27_02070 S nitroreductase
PLAFGAII_01583 5.2e-170 ydhF S Aldo keto reductase
PLAFGAII_01584 1.6e-97 K WHG domain
PLAFGAII_01585 1.2e-120 V abc transporter atp-binding protein
PLAFGAII_01586 1e-204 P FtsX-like permease family
PLAFGAII_01587 1.5e-42 S Sugar efflux transporter for intercellular exchange
PLAFGAII_01588 7.3e-83 btuE 1.11.1.9 O Belongs to the glutathione peroxidase family
PLAFGAII_01589 0.0 S dextransucrase activity
PLAFGAII_01590 2.1e-215 yfnA E amino acid
PLAFGAII_01591 2.6e-50 XK27_01300 P Protein conserved in bacteria
PLAFGAII_01592 4.4e-105 S Carbohydrate-binding domain-containing protein Cthe_2159
PLAFGAII_01593 4.5e-15 csbD S CsbD-like
PLAFGAII_01594 1.1e-102 S Protein of unknown function (DUF421)
PLAFGAII_01595 2e-58 S Protein of unknown function (DUF3290)
PLAFGAII_01596 8.7e-181 manA 5.3.1.8 G mannose-6-phosphate isomerase
PLAFGAII_01597 9.2e-229 brnQ E Component of the transport system for branched-chain amino acids
PLAFGAII_01598 2.8e-80 L Transposase
PLAFGAII_01599 3.9e-140 L overlaps another CDS with the same product name
PLAFGAII_01601 1.2e-49 L Helix-turn-helix domain
PLAFGAII_01602 3e-86 L COG1943 Transposase and inactivated derivatives
PLAFGAII_01606 2.8e-32 blpT
PLAFGAII_01607 7e-187 pepP 3.4.11.9, 3.4.13.9 E Belongs to the peptidase M24B family
PLAFGAII_01608 3.3e-85 comEB 3.5.4.12 F ComE operon protein 2
PLAFGAII_01609 1.2e-97 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PLAFGAII_01610 1.7e-61 yqhY S protein conserved in bacteria
PLAFGAII_01611 8.1e-73 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PLAFGAII_01612 9.2e-178 scrR K Transcriptional regulator
PLAFGAII_01613 7.8e-290 scrB 3.2.1.26, 3.2.1.80 GH32 G invertase
PLAFGAII_01614 0.0 scrA 2.7.1.201, 2.7.1.208, 2.7.1.211 G pts system
PLAFGAII_01615 3.5e-171 scrK 2.7.1.2, 2.7.1.4 GK Fructokinase
PLAFGAII_01616 7.4e-188 manA 5.3.1.8 G mannose-6-phosphate isomerase
PLAFGAII_01618 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PLAFGAII_01619 5.5e-197 aroF 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PLAFGAII_01620 1.2e-196 aroF 2.5.1.54 E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PLAFGAII_01621 1.7e-60 acpS 2.7.6.3, 2.7.8.7, 5.1.1.1 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
PLAFGAII_01622 2.7e-181 alr 5.1.1.1, 5.1.1.5 E Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PLAFGAII_01623 0.0 recG 3.6.4.12 L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PLAFGAII_01627 2.9e-31 yozG K Transcriptional regulator
PLAFGAII_01629 7.1e-178 ansA 3.5.1.1 EJ COG0252 L-asparaginase archaeal Glu-tRNAGln amidotransferase subunit D
PLAFGAII_01630 1.4e-259 XK27_03190 S hydrolases of the HAD superfamily
PLAFGAII_01631 1.7e-112 yebC M Membrane
PLAFGAII_01632 1.3e-307 KT response to antibiotic
PLAFGAII_01633 1.5e-74 XK27_02470 K LytTr DNA-binding domain
PLAFGAII_01634 2e-118 liaI S membrane
PLAFGAII_01635 8.7e-78 mccF V LD-carboxypeptidase
PLAFGAII_01636 4e-43 S Sugar efflux transporter for intercellular exchange
PLAFGAII_01637 2.6e-194 mccF V LD-carboxypeptidase
PLAFGAII_01638 1.7e-298 O MreB/Mbl protein
PLAFGAII_01640 1.7e-145 V Psort location CytoplasmicMembrane, score
PLAFGAII_01643 6.8e-14
PLAFGAII_01644 8e-233 dcuS 2.7.13.3 T protein histidine kinase activity
PLAFGAII_01645 9.2e-240 2.7.13.3 T protein histidine kinase activity
PLAFGAII_01646 0.0 rexB 3.1.21.3, 3.6.4.12 L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
PLAFGAII_01647 0.0 addA 3.6.4.12 L ATP-dependent helicase nuclease subunit A
PLAFGAII_01648 2.4e-125 S Protein of unknown function (DUF554)
PLAFGAII_01649 2.6e-132 ecsA_2 V abc transporter atp-binding protein
PLAFGAII_01650 3.2e-276 XK27_00765
PLAFGAII_01651 1.3e-140 proB 2.7.2.11 E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PLAFGAII_01652 9.3e-223 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PLAFGAII_01653 3.2e-60 yhaI J Membrane
PLAFGAII_01654 2.3e-32 yhaI J Protein of unknown function (DUF805)
PLAFGAII_01655 3.4e-62 yhaI J Protein of unknown function (DUF805)
PLAFGAII_01656 1.5e-44 yhaI J Protein of unknown function (DUF805)
PLAFGAII_01659 1.3e-95
PLAFGAII_01660 3.9e-173 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
PLAFGAII_01661 4e-45 ftsL D cell division protein FtsL
PLAFGAII_01662 0.0 ftsI 3.4.16.4 M penicillin-binding protein
PLAFGAII_01663 7e-184 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PLAFGAII_01664 1.1e-219 cshB 3.6.4.13 JKL DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
PLAFGAII_01666 2.4e-259 yunD 3.1.3.5 F Belongs to the 5'-nucleotidase family
PLAFGAII_01667 5.6e-63 yutD J protein conserved in bacteria
PLAFGAII_01668 1.8e-223 rlmN 2.1.1.192 J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
PLAFGAII_01669 1.2e-91 XK27_09885 V Glycopeptide antibiotics resistance protein
PLAFGAII_01672 0.0 mdlA V abc transporter atp-binding protein
PLAFGAII_01673 0.0 mdlB V abc transporter atp-binding protein
PLAFGAII_01680 1.8e-44 spiA K sequence-specific DNA binding
PLAFGAII_01681 0.0 pepX 3.4.14.11 E Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
PLAFGAII_01682 5.6e-150 gla U Belongs to the MIP aquaporin (TC 1.A.8) family
PLAFGAII_01683 2e-91 V CAAX protease self-immunity
PLAFGAII_01684 2.3e-139 cppA E CppA N-terminal
PLAFGAII_01685 8.2e-171 ampC V COG1680 Beta-lactamase class C and other penicillin binding proteins
PLAFGAII_01687 2.4e-75 yjcF S COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PLAFGAII_01688 7.8e-143 cah 4.2.1.1 P carbonic anhydrase
PLAFGAII_01689 0.0 pflB 2.3.1.54 C formate acetyltransferase'
PLAFGAII_01690 8.9e-201 dinB 2.7.7.7 L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PLAFGAII_01691 2.8e-35
PLAFGAII_01692 1.5e-152 yxeM ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PLAFGAII_01693 3.3e-15 yxeM ET ABC-type amino acid transport signal transduction systems, periplasmic component domain
PLAFGAII_01694 3e-162 yxeN P ABC transporter (Permease
PLAFGAII_01695 6.1e-129 tcyN 3.6.3.21 E abc transporter atp-binding protein
PLAFGAII_01696 5e-10 S Protein of unknown function (DUF4059)
PLAFGAII_01697 2.1e-171 trxB 1.8.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PLAFGAII_01698 2.1e-91 rsmD 2.1.1.171 L Methyltransferase
PLAFGAII_01699 5e-87 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PLAFGAII_01700 6e-186 ylbL T Belongs to the peptidase S16 family
PLAFGAII_01701 5.4e-183 yhcC S radical SAM protein
PLAFGAII_01702 2.7e-97 ytqB J (SAM)-dependent
PLAFGAII_01704 0.0 yjcE P NhaP-type Na H and K H antiporters
PLAFGAII_01705 5.6e-141 modF 3.6.3.21, 3.6.3.34 P abc transporter atp-binding protein
PLAFGAII_01706 3.8e-238 hlyX S COG1253 Hemolysins and related proteins containing CBS domains
PLAFGAII_01707 2.5e-10 MU outer membrane autotransporter barrel domain protein
PLAFGAII_01708 2e-157 pflA 1.97.1.4 C Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PLAFGAII_01710 9e-75 XK27_03180 T universal stress protein
PLAFGAII_01711 7.6e-238 alaA 2.6.1.2, 2.6.1.66 E Aminotransferase
PLAFGAII_01712 8.1e-140 codY K DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
PLAFGAII_01713 6.4e-99 pncA Q isochorismatase
PLAFGAII_01714 2.4e-291 ascB 3.2.1.86 GT1 G Belongs to the glycosyl hydrolase 1 family
PLAFGAII_01715 3.1e-41 tagE 2.4.1.52 GT4 M transferase activity, transferring glycosyl groups
PLAFGAII_01716 1.4e-47 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PLAFGAII_01717 3.8e-268 gatA 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
PLAFGAII_01718 3e-273 gatB 6.1.1.12, 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PLAFGAII_01719 9e-60
PLAFGAII_01720 1.3e-190 bdhA 1.1.1.303, 1.1.1.4 E Dehydrogenase
PLAFGAII_01721 9.8e-145 yicL EG COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
PLAFGAII_01722 5.1e-98 yqeG S hydrolase of the HAD superfamily
PLAFGAII_01723 1e-212 yqeH S in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
PLAFGAII_01724 7.7e-49 yhbY J RNA-binding protein
PLAFGAII_01725 5.9e-117 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PLAFGAII_01726 8.3e-105 nadD 2.7.6.3, 2.7.7.18 H HD superfamily hydrolase involved in NAD metabolism
PLAFGAII_01727 3e-87 entB 3.5.1.19 Q Isochorismatase family
PLAFGAII_01728 7.7e-58 rsfS J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
PLAFGAII_01729 8.4e-139 yqeM Q Methyltransferase domain protein
PLAFGAII_01730 1.2e-194 ylbM S Belongs to the UPF0348 family
PLAFGAII_01731 2.5e-32 L Integrase core domain protein
PLAFGAII_01732 3.6e-94 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PLAFGAII_01733 1.3e-98 comFC K competence protein
PLAFGAII_01734 2.4e-237 comFA L Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
PLAFGAII_01735 2.2e-108 yvyE 3.4.13.9 S YigZ family
PLAFGAII_01736 6.3e-168 cysK 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
PLAFGAII_01737 6.6e-111 acuB S CBS domain
PLAFGAII_01738 5.6e-124 livF E COG0410 ABC-type branched-chain amino acid transport systems, ATPase component
PLAFGAII_01739 6.9e-136 livG E COG0411 ABC-type branched-chain amino acid transport systems, ATPase component
PLAFGAII_01740 4.9e-139 livM E Belongs to the binding-protein-dependent transport system permease family
PLAFGAII_01741 4.2e-145 livH E Belongs to the binding-protein-dependent transport system permease family
PLAFGAII_01742 2.6e-211 livJ E COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component
PLAFGAII_01743 1.9e-46 ylbG S UPF0298 protein
PLAFGAII_01744 6.4e-73 ylbF S Belongs to the UPF0342 family
PLAFGAII_01745 3.7e-105 clpP 3.4.21.92 OU Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
PLAFGAII_01746 5.7e-112 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PLAFGAII_01747 0.0 sacB 2.4.1.10, 2.4.1.9, 3.2.1.26 GH32,GH68 G Belongs to the glycosyl hydrolase 68 family
PLAFGAII_01748 2.5e-303 3.2.1.26, 3.2.1.65 GH32 G Belongs to the glycosyl hydrolase 32 family
PLAFGAII_01749 7.3e-222 malY 4.4.1.8 E COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
PLAFGAII_01750 3.9e-201 metB 2.5.1.48, 4.4.1.8 E cystathionine
PLAFGAII_01751 0.0 pacL 3.6.3.8, 3.6.3.9 P cation transport ATPase
PLAFGAII_01752 6.5e-282 ytgP S Membrane protein involved in the export of O-antigen and teichoic acid
PLAFGAII_01753 4.2e-267 murE 6.3.2.13, 6.3.2.7 M to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PLAFGAII_01754 1.2e-97 yvdD 3.2.2.10 S Belongs to the LOG family
PLAFGAII_01755 8.6e-57 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PLAFGAII_01756 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PLAFGAII_01757 1.4e-41 ylxQ J ribosomal protein
PLAFGAII_01758 1e-47 ylxR K Nucleic-acid-binding protein implicated in transcription termination
PLAFGAII_01759 2.4e-196 nusA K Participates in both transcription termination and antitermination
PLAFGAII_01760 2.3e-81 rimP S Required for maturation of 30S ribosomal subunits
PLAFGAII_01761 3.5e-185 brpA K Transcriptional
PLAFGAII_01762 6e-91 XK27_05885 2.3.1.82 M phosphinothricin N-acetyltransferase activity
PLAFGAII_01763 1.2e-76 ydiB 2.7.1.221, 5.1.1.1 M ATPase or kinase
PLAFGAII_01764 1.6e-247 pbuO S permease
PLAFGAII_01765 6e-154 yitU 3.1.3.104 S hydrolases of the HAD superfamily
PLAFGAII_01766 2.8e-125 XK27_00940 1.2.1.70, 3.5.1.9 S Metal-dependent hydrolase
PLAFGAII_01767 6.9e-168 manL 2.7.1.191 G pts system
PLAFGAII_01768 5.7e-133 manY G pts system
PLAFGAII_01769 1.3e-157 manN G PTS system mannose fructose sorbose family IID component
PLAFGAII_01770 3.8e-66 manO S Protein conserved in bacteria
PLAFGAII_01771 4e-176 manL 2.7.1.191 G pts system
PLAFGAII_01772 1.3e-116 manM G pts system
PLAFGAII_01773 2.5e-169 manN G PTS system mannose fructose sorbose family IID component
PLAFGAII_01774 2.5e-62 manO S protein conserved in bacteria
PLAFGAII_01775 5.2e-229 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PLAFGAII_01776 8.3e-111
PLAFGAII_01777 2.6e-247 der 1.1.1.399, 1.1.1.95 S GTPase that plays an essential role in the late steps of ribosome biogenesis
PLAFGAII_01778 4.4e-166 dnaI L Primosomal protein DnaI
PLAFGAII_01779 1e-215 dnaB L Replication initiation and membrane attachment
PLAFGAII_01780 3.6e-82 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PLAFGAII_01781 3.1e-276 T PhoQ Sensor
PLAFGAII_01782 7.9e-123 T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PLAFGAII_01783 3.1e-90 yceD K metal-binding, possibly nucleic acid-binding protein
PLAFGAII_01784 1.2e-129 rsmG 2.1.1.170 J Ribosomal RNA small subunit methyltransferase G
PLAFGAII_01785 1.1e-232 P COG0168 Trk-type K transport systems, membrane components
PLAFGAII_01786 3e-119 ktrA P COG0569 K transport systems, NAD-binding component
PLAFGAII_01787 2.2e-148 cbiQ P cobalt transport
PLAFGAII_01788 3.5e-310 ykoD P abc transporter atp-binding protein
PLAFGAII_01789 3e-93 S UPF0397 protein
PLAFGAII_01790 1.6e-157 salL 2.5.1.63, 2.5.1.94 S S-adenosyl-l-methionine hydroxide adenosyltransferase
PLAFGAII_01791 1.8e-210 sstT E Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
PLAFGAII_01792 1.2e-99 metI P ABC transporter (Permease
PLAFGAII_01793 6.4e-188 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PLAFGAII_01794 2e-263 dapE 3.5.1.18 E COG0624, acetylornithine deacetylase succinyl-diaminopimelate desuccinylase and related deacylases
PLAFGAII_01795 9.2e-164 metQ M Belongs to the NlpA lipoprotein family
PLAFGAII_01796 6.3e-138 ET ABC transporter substrate-binding protein
PLAFGAII_01797 6.3e-131 cbiO P ABC transporter
PLAFGAII_01798 2.9e-137 P cobalt transport protein
PLAFGAII_01799 2.1e-177 cbiM P PDGLE domain
PLAFGAII_01800 6.4e-159 ureD O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PLAFGAII_01801 9.5e-112 ureG KO Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PLAFGAII_01802 1.7e-128 ureF O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PLAFGAII_01803 6.6e-78 ureE O enzyme active site formation
PLAFGAII_01804 0.0 ureC 3.5.1.5 E Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family
PLAFGAII_01805 7.8e-54 ureB 3.5.1.5 E Belongs to the urease beta subunit family
PLAFGAII_01806 7.6e-46 ureA 3.5.1.5 E Belongs to the urease gamma subunit family
PLAFGAII_01807 6.8e-95 ureI S AmiS/UreI family transporter
PLAFGAII_01808 1.7e-241 S Domain of unknown function (DUF4173)
PLAFGAII_01809 3.2e-53 yhaI L Membrane
PLAFGAII_01810 0.0 comA V ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PLAFGAII_01812 5.8e-162 T Diguanylate cyclase
PLAFGAII_01813 2.2e-35 pfkB 2.7.1.11, 2.7.1.56 H Belongs to the carbohydrate kinase PfkB family. LacC subfamily
PLAFGAII_01814 9.5e-47 fruR K transcriptional
PLAFGAII_01815 1.3e-92 L Transposase
PLAFGAII_01816 7.3e-61 tnp* 1.1.1.193 L An automated process has identified a potential problem with this gene model
PLAFGAII_01817 6.7e-19 rpmG J Belongs to the bacterial ribosomal protein bL33 family
PLAFGAII_01818 1.5e-25 rpmF J Belongs to the bacterial ribosomal protein bL32 family
PLAFGAII_01819 2.8e-218 metE 2.1.1.14 E Methionine synthase
PLAFGAII_01820 4.4e-130 2.7.1.201, 2.7.1.208, 2.7.1.211 G pts system
PLAFGAII_01821 1.8e-237 hisS 6.1.1.21 J histidyl-tRNA synthetase
PLAFGAII_01823 0.0 aspS 6.1.1.12 J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
PLAFGAII_01824 9.3e-167 XK27_01785 S cog cog1284
PLAFGAII_01825 2.9e-120 yaaA S Belongs to the UPF0246 family
PLAFGAII_01826 3.4e-114 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PLAFGAII_01827 3.2e-89 XK27_10930 K acetyltransferase
PLAFGAII_01828 7.5e-14
PLAFGAII_01829 0.0 nrdD 1.1.98.6 F Ribonucleoside-triphosphate reductase
PLAFGAII_01830 9.5e-292 ccs S the current gene model (or a revised gene model) may contain a frame shift
PLAFGAII_01831 2.1e-43 yrzB S Belongs to the UPF0473 family
PLAFGAII_01832 8.9e-69 yqgF L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PLAFGAII_01833 6.3e-44 yrzL S Belongs to the UPF0297 family
PLAFGAII_01834 8.4e-27 rpmB J Belongs to the bacterial ribosomal protein bL28 family
PLAFGAII_01835 3.5e-233 rarA L ATPase related to the helicase subunit of the Holliday junction resolvase
PLAFGAII_01837 2.9e-215 int L Belongs to the 'phage' integrase family
PLAFGAII_01838 1.9e-18 S Domain of unknown function (DUF3173)
PLAFGAII_01839 6.9e-157 L Replication initiation factor
PLAFGAII_01840 3.8e-90 K sequence-specific DNA binding
PLAFGAII_01841 7.3e-81 S Short repeat of unknown function (DUF308)
PLAFGAII_01842 6.8e-78 S membrane protein of uknown function UCP014873
PLAFGAII_01843 4.9e-60 K sequence-specific DNA binding
PLAFGAII_01844 2.1e-197 ltrA S Low temperature requirement protein
PLAFGAII_01845 6.5e-90 adk 2.7.4.3 F topology modulation protein
PLAFGAII_01846 4.1e-250 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PLAFGAII_01847 1.4e-80 ptpA 3.1.3.48 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PLAFGAII_01848 2.8e-35 XK27_09805 S MORN repeat protein
PLAFGAII_01849 0.0 XK27_09800 I Acyltransferase
PLAFGAII_01850 1.1e-186 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
PLAFGAII_01851 2.9e-48 rpsJ J Involved in the binding of tRNA to the ribosomes
PLAFGAII_01852 2.4e-110 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PLAFGAII_01853 1.7e-103 rplD J Forms part of the polypeptide exit tunnel
PLAFGAII_01854 2.4e-44 rplW J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
PLAFGAII_01855 6.8e-153 rplB J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PLAFGAII_01856 8.3e-47 rpsS J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PLAFGAII_01857 7.3e-53 rplV J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PLAFGAII_01858 1.6e-117 rpsC J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PLAFGAII_01859 1.1e-71 rplP J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PLAFGAII_01860 3.5e-26 rpmC J Belongs to the universal ribosomal protein uL29 family
PLAFGAII_01861 6e-39 rpsQ J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PLAFGAII_01862 3.9e-60 rplN J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PLAFGAII_01863 1.4e-47 rplX J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PLAFGAII_01864 1.6e-94 rplE J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PLAFGAII_01865 1.5e-28 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PLAFGAII_01866 1.2e-67 rpsH J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PLAFGAII_01867 6.6e-93 rplF J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PLAFGAII_01868 1.9e-56 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PLAFGAII_01869 1.3e-79 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PLAFGAII_01870 1.9e-23 rpmD J ribosomal protein l30
PLAFGAII_01871 5.7e-58 rplO J binds to the 23S rRNA
PLAFGAII_01872 2.1e-230 secY U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
PLAFGAII_01873 4.7e-114 adk 2.7.4.3 F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
PLAFGAII_01874 2.7e-32 infA J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PLAFGAII_01875 6e-15 rpmJ J Belongs to the bacterial ribosomal protein bL36 family
PLAFGAII_01876 4.4e-56 rpsM J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PLAFGAII_01877 1.9e-62 rpsK J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PLAFGAII_01878 3.6e-171 rpoA 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PLAFGAII_01879 4.4e-62 rplQ J ribosomal protein l17
PLAFGAII_01880 1.2e-241 6.3.2.2 H gamma-glutamylcysteine synthetase
PLAFGAII_01882 2e-163 fba 4.1.2.13, 4.1.2.29 G aldolase
PLAFGAII_01885 5.1e-96 ywlG S Belongs to the UPF0340 family
PLAFGAII_01886 5.7e-255 treC 3.2.1.93 GH13 G COG0366 Glycosidases
PLAFGAII_01887 0.0 pepO 3.4.24.71 O Peptidase family M13
PLAFGAII_01888 0.0 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
PLAFGAII_01891 1.2e-274 thrC 4.2.3.1 E Threonine synthase
PLAFGAII_01892 2.5e-223 norN V Mate efflux family protein
PLAFGAII_01893 1.4e-57 asp S cog cog1302
PLAFGAII_01894 4.2e-303 yloV S kinase related to dihydroxyacetone kinase
PLAFGAII_01895 0.0 ilvD 4.2.1.9 E Belongs to the IlvD Edd family
PLAFGAII_01896 0.0 ilvB 2.2.1.6 EH Acetolactate synthase
PLAFGAII_01897 2.2e-76 ilvN 2.2.1.6 E Acetolactate synthase
PLAFGAII_01898 1.3e-193 ilvC 1.1.1.86 H Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PLAFGAII_01899 2.6e-09
PLAFGAII_01900 3.4e-291 adcA P Belongs to the bacterial solute-binding protein 9 family
PLAFGAII_01901 2.2e-140 XK27_10720 D peptidase activity
PLAFGAII_01902 1.6e-276 pepD E Dipeptidase
PLAFGAII_01903 5.7e-161 whiA K May be required for sporulation
PLAFGAII_01904 6.2e-182 ybhK S Required for morphogenesis under gluconeogenic growth conditions
PLAFGAII_01905 2e-163 rapZ S Displays ATPase and GTPase activities
PLAFGAII_01906 9.1e-136 yejC S cyclic nucleotide-binding protein
PLAFGAII_01907 7e-196 D nuclear chromosome segregation
PLAFGAII_01908 1.4e-94 queF 1.7.1.13 S Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily
PLAFGAII_01909 2.7e-134 queE 1.97.1.4, 4.3.99.3 H Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds
PLAFGAII_01910 1.4e-80 queD 4.1.2.50, 4.2.3.12 H synthase
PLAFGAII_01911 4.4e-123 queC 6.3.4.20 F Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PLAFGAII_01912 2.3e-63 tdcF 3.5.99.10 J endoribonuclease L-PSP
PLAFGAII_01913 1.4e-18
PLAFGAII_01914 7.1e-261 asnS 6.1.1.22 J Catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
PLAFGAII_01915 9.1e-212 aspB 2.6.1.1, 2.6.1.14 E Aminotransferase
PLAFGAII_01916 1.1e-81 ypmB S Protein conserved in bacteria
PLAFGAII_01917 0.0 dinG 2.7.7.7, 3.6.4.12 L helicase involved in DNA repair and perhaps also replication
PLAFGAII_01918 4e-121 ycbL 3.1.2.6 S COG0491 Zn-dependent hydrolases, including glyoxylases
PLAFGAII_01919 2e-169 yufQ S Belongs to the binding-protein-dependent transport system permease family
PLAFGAII_01920 2.6e-181 yufP S Belongs to the binding-protein-dependent transport system permease family
PLAFGAII_01921 4.1e-281 xylG 3.6.3.17 S ABC transporter, ATP-binding protein
PLAFGAII_01922 1.8e-190 tcsA S membrane
PLAFGAII_01923 2.2e-64 cdd 2.4.2.2, 3.5.4.5 F This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis
PLAFGAII_01924 1.8e-111 deoC 4.1.2.4, 5.4.2.8 F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PLAFGAII_01925 5e-232 pdp 2.4.2.2, 2.4.2.4 F Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
PLAFGAII_01926 1.7e-105 rsmC 2.1.1.172 J Methyltransferase small domain protein
PLAFGAII_01927 2.1e-171 coaA 2.7.1.33 F Pantothenic acid kinase
PLAFGAII_01928 1e-29 rpsT J Binds directly to 16S ribosomal RNA
PLAFGAII_01929 3.3e-232 T PhoQ Sensor
PLAFGAII_01930 2.3e-119 T Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
PLAFGAII_01931 0.0 fhs 6.3.4.3 F Belongs to the formate--tetrahydrofolate ligase family
PLAFGAII_01932 1.2e-115 coaB 4.1.1.36, 6.3.2.5 H Phosphopantothenate-cysteine ligase
PLAFGAII_01933 5.7e-92 coaBC 4.1.1.36, 6.3.2.5 H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PLAFGAII_01934 2.4e-93 panT S ECF transporter, substrate-specific component
PLAFGAII_01935 2.9e-91 panT S Psort location CytoplasmicMembrane, score
PLAFGAII_01936 0.0 pgm 5.4.2.2, 5.4.2.8 G Phosphoglucomutase
PLAFGAII_01937 1.6e-165 metF 1.5.1.20 E reductase
PLAFGAII_01938 0.0 metE 2.1.1.14 E Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PLAFGAII_01940 0.0 pabB 2.6.1.85, 4.1.3.27, 4.1.3.38 EH component I
PLAFGAII_01941 0.0 3.6.3.8 P cation transport ATPase
PLAFGAII_01942 9.1e-242 dltD M Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
PLAFGAII_01943 2.2e-35 dltC 6.1.1.13 IQ Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PLAFGAII_01944 1.6e-235 dltB M Membrane protein involved in D-alanine export
PLAFGAII_01945 1e-295 dltA 6.1.1.13 Q Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PLAFGAII_01946 0.0 XK27_10035 V abc transporter atp-binding protein
PLAFGAII_01947 1.4e-293 yfiB1 V abc transporter atp-binding protein
PLAFGAII_01948 2.4e-99 pvaA M lytic transglycosylase activity
PLAFGAII_01949 1.6e-177 ndpA S 37-kD nucleoid-associated bacterial protein
PLAFGAII_01950 2.7e-230 glyA 2.1.2.1 E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PLAFGAII_01951 6.3e-100 ywlC 2.7.7.87, 3.1.3.48 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
PLAFGAII_01952 9.8e-144 prmB 2.1.1.297, 2.1.1.298 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
PLAFGAII_01953 3.6e-191 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PLAFGAII_01954 3.9e-110 tdk 2.7.1.21 F thymidine kinase
PLAFGAII_01955 5.1e-179 add 3.5.4.4 F Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PLAFGAII_01956 1.9e-152 gst O Glutathione S-transferase
PLAFGAII_01957 1.6e-174 nrnA 3.1.13.3, 3.1.3.7 S domain protein
PLAFGAII_01958 2.1e-166 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
PLAFGAII_01959 4.4e-45 rpmE2 J 50S ribosomal protein L31
PLAFGAII_01960 9.1e-226 mntH P Mn2 and Fe2 transporters of the NRAMP family
PLAFGAII_01961 6.4e-163 ypuA S secreted protein
PLAFGAII_01962 8.2e-72 yaeR E COG0346 Lactoylglutathione lyase and related lyases
PLAFGAII_01963 7.9e-132 srtA 3.4.22.70 M Sortase (surface protein transpeptidase)
PLAFGAII_01964 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PLAFGAII_01965 2.2e-179 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)