ORF_ID e_value Gene_name EC_number CAZy COGs Description
PAFGACJO_00001 0.0 yybT T signaling protein consisting of a modified GGDEF domain and a DHH domain
PAFGACJO_00002 2e-74 rplI J Binds to the 23S rRNA
PAFGACJO_00003 5.3e-235 dnaB 3.6.4.12 L Participates in initiation and elongation during chromosome replication
PAFGACJO_00004 1.3e-208 yttB EGP Major facilitator Superfamily
PAFGACJO_00005 2.5e-58
PAFGACJO_00006 4.3e-158 S Polyphosphate nucleotide phosphotransferase, PPK2 family
PAFGACJO_00007 3.4e-100 K DNA-binding helix-turn-helix protein
PAFGACJO_00009 1.2e-73 K helix_turn_helix multiple antibiotic resistance protein
PAFGACJO_00010 1.4e-309 lmrA 3.6.3.44 V ABC transporter
PAFGACJO_00012 6.8e-130 K response regulator
PAFGACJO_00013 0.0 vicK 2.7.13.3 T Histidine kinase
PAFGACJO_00014 7.1e-250 yycH S YycH protein
PAFGACJO_00015 1.7e-151 yycI S YycH protein
PAFGACJO_00016 1.2e-154 vicX 3.1.26.11 S domain protein
PAFGACJO_00017 1.7e-216 htrA 3.4.21.107 O serine protease
PAFGACJO_00018 5.9e-88 pgpA 3.1.3.27 I Phosphatidylglycerophosphatase A
PAFGACJO_00019 9.4e-178 ABC-SBP S ABC transporter
PAFGACJO_00020 4.7e-88 rlmH 2.1.1.177 J Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PAFGACJO_00022 1.2e-94 S reductase
PAFGACJO_00023 1.4e-225 dhaT 1.1.1.1, 1.1.1.202 C Dehydrogenase
PAFGACJO_00024 1.7e-154 glcU U sugar transport
PAFGACJO_00025 9.4e-149 E Glyoxalase-like domain
PAFGACJO_00026 2.3e-145 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PAFGACJO_00027 2.6e-258 gabD 1.2.1.16, 1.2.1.20, 1.2.1.79 C Belongs to the aldehyde dehydrogenase family
PAFGACJO_00028 9.3e-143 bacG M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PAFGACJO_00029 8.3e-128 V ABC transporter
PAFGACJO_00030 1.3e-213 bacI V MacB-like periplasmic core domain
PAFGACJO_00031 5.2e-39
PAFGACJO_00032 2.7e-263 S Putative peptidoglycan binding domain
PAFGACJO_00035 7.3e-154 2.7.13.3 T GHKL domain
PAFGACJO_00036 8e-96 K LytTr DNA-binding domain
PAFGACJO_00039 5e-75 osmC O OsmC-like protein
PAFGACJO_00040 1.4e-181 ldhD 1.1.1.28 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAFGACJO_00041 4.4e-222 patA 2.6.1.1 E Aminotransferase
PAFGACJO_00042 8.4e-34
PAFGACJO_00043 0.0 clpL O associated with various cellular activities
PAFGACJO_00044 1.7e-207 menC 4.2.1.113 H Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)
PAFGACJO_00046 3.9e-107 wecD3 K PFAM GCN5-related N-acetyltransferase
PAFGACJO_00047 2.8e-287 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAFGACJO_00048 0.0 rexB 3.1.21.3, 3.6.4.12 L The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
PAFGACJO_00049 0.0 addA 3.6.4.12 L ATP-dependent helicase nuclease subunit A
PAFGACJO_00050 1.5e-172 malR K Transcriptional regulator, LacI family
PAFGACJO_00051 1.1e-214 phbA 2.3.1.9 I Belongs to the thiolase family
PAFGACJO_00052 1.1e-256 malT G Major Facilitator
PAFGACJO_00053 0.0 mapA 2.4.1.8 GH65 G hydrolase, family 65, central catalytic
PAFGACJO_00054 5.4e-121 pgmB 2.4.1.64, 3.1.3.12, 3.2.1.28, 5.4.2.6 GH37,GH65 S beta-phosphoglucomutase
PAFGACJO_00055 1.3e-71
PAFGACJO_00056 1.7e-87 2.7.6.5 T Region found in RelA / SpoT proteins
PAFGACJO_00057 1.5e-115 K response regulator
PAFGACJO_00058 4.2e-223 sptS 2.7.13.3 T Histidine kinase
PAFGACJO_00059 7.2e-209 yfeO P Voltage gated chloride channel
PAFGACJO_00060 9.6e-258 gshF 6.3.2.2 H Belongs to the glutamate--cysteine ligase type 1 family
PAFGACJO_00061 9.5e-135 puuD S peptidase C26
PAFGACJO_00062 1.9e-166 yvgN C Aldo keto reductase
PAFGACJO_00063 0.0 glpQ 3.1.4.46 C Membrane domain of glycerophosphoryl diester phosphodiesterase
PAFGACJO_00064 2.3e-87 hmpT S ECF-type riboflavin transporter, S component
PAFGACJO_00065 8.4e-262 nox C NADH oxidase
PAFGACJO_00066 3.8e-187 guaC 1.1.1.205, 1.7.1.7 F Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
PAFGACJO_00067 1.8e-253 purA 6.3.4.4 F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PAFGACJO_00068 1e-81
PAFGACJO_00069 1.4e-95 pyrR 2.4.2.9 F Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PAFGACJO_00071 9.6e-115 K Transcriptional regulator, TetR family
PAFGACJO_00072 2.2e-72
PAFGACJO_00073 1.5e-270 tagE3 2.4.1.52 GT4 M Glycosyl transferases group 1
PAFGACJO_00074 2.7e-277 tagE2 2.4.1.52 GT4 M Poly(Glycerol-phosphate) alpha-glucosyltransferase
PAFGACJO_00075 6.1e-260 M protein which possibly mediates interactions of S.aureus with components of the extracellular matrix of higher eukaryotes
PAFGACJO_00076 0.0 malL 3.2.1.10 GH13 G Alpha amylase, catalytic domain protein
PAFGACJO_00077 1.4e-267 G Major Facilitator
PAFGACJO_00078 0.0 carB 6.3.5.5 F Carbamoyl-phosphate synthase
PAFGACJO_00079 1e-209 carA 6.3.5.5 F Carbamoyl-phosphate synthetase glutamine chain
PAFGACJO_00080 5.2e-259 G Major Facilitator
PAFGACJO_00081 9.3e-181 K Transcriptional regulator, LacI family
PAFGACJO_00082 1.8e-267 rumA 2.1.1.190, 2.1.1.35 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAFGACJO_00083 5.4e-101 nqr 1.5.1.36 S reductase
PAFGACJO_00084 2.2e-200 XK27_09615 S reductase
PAFGACJO_00085 9.8e-177 apbE 2.7.1.180 H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
PAFGACJO_00086 2.5e-17 fhaB M Rib/alpha-like repeat
PAFGACJO_00087 0.0 fhaB M Rib/alpha-like repeat
PAFGACJO_00088 5.7e-98 infB UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_00089 2.1e-11 UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_00090 3.8e-251 serS 6.1.1.11 J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PAFGACJO_00091 5.2e-265 glnP P ABC transporter
PAFGACJO_00092 1.4e-138 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
PAFGACJO_00093 1.5e-221 cycA E Amino acid permease
PAFGACJO_00094 1.5e-217 nupG F Nucleoside transporter
PAFGACJO_00095 6.6e-170 rihC 3.2.2.1 F Nucleoside
PAFGACJO_00096 7.2e-161 fadB4 1.1.1.157 I 3-hydroxyacyl-CoA dehydrogenase
PAFGACJO_00097 6.1e-126 rsmG 2.1.1.170 J Specifically methylates the N7 position of a guanine in 16S rRNA
PAFGACJO_00098 4.9e-147 noc K Belongs to the ParB family
PAFGACJO_00099 3.6e-140 soj D Sporulation initiation inhibitor
PAFGACJO_00100 1.3e-154 spo0J K Belongs to the ParB family
PAFGACJO_00101 2e-31 yyzM S Bacterial protein of unknown function (DUF951)
PAFGACJO_00102 8.8e-201 ychF J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
PAFGACJO_00103 3.1e-136 XK27_01040 S Protein of unknown function (DUF1129)
PAFGACJO_00104 3.7e-117 deoC 4.1.2.4, 5.4.2.8 F Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
PAFGACJO_00105 4.1e-236 deoB 5.4.2.7 G Phosphotransfer between the C1 and C5 carbon atoms of pentose
PAFGACJO_00106 1.7e-235 pdp 2.4.2.2, 2.4.2.4 F pyrimidine-nucleoside phosphorylase
PAFGACJO_00107 1.1e-130 deoD 2.4.2.1, 2.4.2.28 F Purine nucleoside phosphorylase
PAFGACJO_00108 4.7e-171 deoR K sugar-binding domain protein
PAFGACJO_00109 5.9e-208 guaB 1.1.1.205 F Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
PAFGACJO_00110 3.8e-125 K response regulator
PAFGACJO_00111 2.4e-201 hpk31 2.7.13.3 T Histidine kinase
PAFGACJO_00112 2.9e-141 azlC E AzlC protein
PAFGACJO_00113 5.6e-53 azlD S branched-chain amino acid
PAFGACJO_00114 2.2e-130 K LysR substrate binding domain
PAFGACJO_00115 3.9e-173 pyrB 2.1.3.2 F Belongs to the ATCase OTCase family
PAFGACJO_00116 2e-244 pyrC 3.5.2.3 F Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
PAFGACJO_00117 4.2e-172 pyrD 1.3.1.14, 1.3.98.1 F Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
PAFGACJO_00118 6e-129 pyrF 4.1.1.23 F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
PAFGACJO_00119 5.1e-116 pyrE 2.4.2.10, 4.1.1.23 F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PAFGACJO_00120 1e-116 thiE 2.5.1.3, 2.7.6.2, 5.4.2.6 S Haloacid dehalogenase-like hydrolase
PAFGACJO_00121 1e-95 ribA 3.5.4.25, 4.1.99.12 H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PAFGACJO_00122 1.5e-230 cfa 2.1.1.317, 2.1.1.79 M cyclopropane-fatty-acyl-phospholipid synthase
PAFGACJO_00123 5.2e-171 K AI-2E family transporter
PAFGACJO_00124 0.0 fhs 6.3.4.3 F Belongs to the formate--tetrahydrofolate ligase family
PAFGACJO_00125 0.0 alsS 2.2.1.6 EH Belongs to the TPP enzyme family
PAFGACJO_00126 2.3e-125 budA 4.1.1.5 H Belongs to the alpha-acetolactate decarboxylase family
PAFGACJO_00127 2.2e-186 thrC 4.2.3.1 E Threonine synthase
PAFGACJO_00128 5.8e-172 hom 1.1.1.3, 2.7.2.4 E homoserine dehydrogenase
PAFGACJO_00129 2.1e-101 thrB 2.7.1.39 F Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
PAFGACJO_00130 1.1e-83 purE 5.4.99.18 F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
PAFGACJO_00131 3e-215 purK 6.3.4.18 F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
PAFGACJO_00132 1.5e-252 purB 4.3.2.2 F Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
PAFGACJO_00133 3.3e-132 purC 4.1.1.21, 4.3.2.2, 6.3.2.6 F Belongs to the SAICAR synthetase family
PAFGACJO_00134 1.8e-37 purS 6.3.2.6, 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAFGACJO_00135 3.1e-127 purQ 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAFGACJO_00136 0.0 purL 6.3.5.3 F Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PAFGACJO_00137 1.5e-277 purF 2.4.2.14 F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
PAFGACJO_00138 2.2e-193 purM 6.3.3.1, 6.3.4.13 F Phosphoribosylformylglycinamidine cyclo-ligase
PAFGACJO_00139 1.8e-104 purN 2.1.2.2 F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PAFGACJO_00140 1.2e-293 purH 2.1.2.3, 3.5.4.10 F Bifunctional purine biosynthesis protein PurH
PAFGACJO_00141 2.6e-241 purD 6.3.4.13 F Belongs to the GARS family
PAFGACJO_00142 1e-130 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PAFGACJO_00143 7.9e-175
PAFGACJO_00144 3.4e-241 tyrS 6.1.1.1 J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PAFGACJO_00145 2e-188 L PFAM Integrase catalytic region
PAFGACJO_00147 2.9e-310 hsdR 3.1.21.3 L Type I restriction enzyme R protein N terminus (HSDR_N)
PAFGACJO_00148 7e-254 hsdM 2.1.1.72 V type I restriction-modification system
PAFGACJO_00149 5.2e-79 hsdS 3.1.21.3 V Type I restriction modification DNA specificity domain
PAFGACJO_00150 1.1e-69 K Putative DNA-binding domain
PAFGACJO_00151 1.1e-130 IQ Dehydrogenase reductase
PAFGACJO_00152 1.3e-37
PAFGACJO_00153 7.5e-115 ywnB S NAD(P)H-binding
PAFGACJO_00154 1.6e-38 S Cytochrome b5-like Heme/Steroid binding domain
PAFGACJO_00155 8.9e-254 nhaC C Na H antiporter NhaC
PAFGACJO_00156 2e-183 P Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
PAFGACJO_00158 2.8e-99 ydeN S Serine hydrolase
PAFGACJO_00159 2.7e-62 psiE S Phosphate-starvation-inducible E
PAFGACJO_00160 8.5e-142 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PAFGACJO_00162 1.4e-178 S Aldo keto reductase
PAFGACJO_00163 4.6e-72 3.1.3.27, 3.1.3.4, 3.1.3.81, 3.6.1.27 I PAP2 superfamily
PAFGACJO_00164 0.0 L Helicase C-terminal domain protein
PAFGACJO_00166 5e-246 merA 1.16.1.1, 1.8.1.7 C Pyridine nucleotide-disulfide oxidoreductase
PAFGACJO_00167 1.9e-50 S Sugar efflux transporter for intercellular exchange
PAFGACJO_00168 5.6e-124
PAFGACJO_00169 6.4e-131 XK27_08875 O PFAM peptidase M10A and M12B, matrixin and adamalysin
PAFGACJO_00170 0.0 cadA P P-type ATPase
PAFGACJO_00171 7.7e-211 5.4.2.7 G Phosphotransfer between the C1 and C5 carbon atoms of pentose
PAFGACJO_00173 5.7e-155 1.6.5.2 GM NAD(P)H-binding
PAFGACJO_00174 4.5e-74 K Transcriptional regulator
PAFGACJO_00175 7.3e-161 proX M ABC transporter, substrate-binding protein, QAT family
PAFGACJO_00176 6.3e-109 proWZ P ABC transporter permease
PAFGACJO_00177 3.2e-141 proV E ABC transporter, ATP-binding protein
PAFGACJO_00178 1.5e-99 proW P ABC transporter, permease protein
PAFGACJO_00179 8.2e-78 msrB 1.8.4.11, 1.8.4.12 O peptide methionine sulfoxide reductase
PAFGACJO_00180 1e-251 clcA P chloride
PAFGACJO_00181 6.5e-215 argE 3.5.1.18 E succinyl-diaminopimelate desuccinylase
PAFGACJO_00182 4.1e-103 metI P ABC transporter permease
PAFGACJO_00183 1.5e-192 metN P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
PAFGACJO_00184 2.5e-155 metQ1 P Belongs to the nlpA lipoprotein family
PAFGACJO_00185 8.9e-170 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
PAFGACJO_00186 6.4e-221 norA EGP Major facilitator Superfamily
PAFGACJO_00187 3.3e-43 1.3.5.4 S FMN binding
PAFGACJO_00188 8.4e-119 nth 4.2.99.18 L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PAFGACJO_00189 1.3e-263 yfnA E amino acid
PAFGACJO_00190 5e-254 gabT 2.6.1.19 E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PAFGACJO_00192 5.3e-204 napA P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
PAFGACJO_00193 0.0 helD 3.6.4.12 L DNA helicase
PAFGACJO_00194 6.3e-81 ndk 2.7.4.6 F Belongs to the NDK family
PAFGACJO_00195 2.3e-181 hpaIM 2.1.1.72 L Belongs to the N(4) N(6)-methyltransferase family
PAFGACJO_00196 1.7e-190 trpS 6.1.1.2 J Belongs to the class-I aminoacyl-tRNA synthetase family
PAFGACJO_00197 1.2e-166 ppx 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
PAFGACJO_00198 1.4e-226 mvaA 1.1.1.34, 1.1.1.88, 2.3.1.9 C Belongs to the HMG-CoA reductase family
PAFGACJO_00199 4.1e-178
PAFGACJO_00200 1.8e-130 cobB K SIR2 family
PAFGACJO_00202 6.9e-161 yunF F Protein of unknown function DUF72
PAFGACJO_00203 0.0 metG 6.1.1.10 J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PAFGACJO_00204 4.9e-156 tatD L hydrolase, TatD family
PAFGACJO_00205 1.9e-98 rnmV 3.1.26.8 J Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
PAFGACJO_00206 6.1e-160 ksgA 2.1.1.182 J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
PAFGACJO_00207 6.8e-37 veg S Biofilm formation stimulator VEG
PAFGACJO_00208 3.1e-161 ispE 2.1.1.182, 2.7.1.148 F Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PAFGACJO_00209 3.1e-167 znuA P Belongs to the bacterial solute-binding protein 9 family
PAFGACJO_00210 7.7e-123 fhuC P ABC transporter
PAFGACJO_00211 1.1e-120 znuB U ABC 3 transport family
PAFGACJO_00212 2.6e-149 purR 2.4.2.7 F pur operon repressor
PAFGACJO_00213 6.3e-241 glmU 2.3.1.157, 2.7.7.23 M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PAFGACJO_00214 1.1e-178 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAFGACJO_00215 8.9e-48
PAFGACJO_00216 5.5e-147 yxeH S hydrolase
PAFGACJO_00217 3.8e-270 ywfO S HD domain protein
PAFGACJO_00218 5.7e-152 lipL 2.3.1.200, 2.3.1.204 H biotin lipoate A B protein ligase
PAFGACJO_00219 2.8e-229 L transposase, IS605 OrfB family
PAFGACJO_00220 8.3e-190 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_00221 1.6e-279 O Arylsulfotransferase (ASST)
PAFGACJO_00222 1.3e-66 ywiB S Domain of unknown function (DUF1934)
PAFGACJO_00223 8.8e-48 rpoE K Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
PAFGACJO_00224 0.0 pyrG 6.3.4.2 F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
PAFGACJO_00225 8e-238 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PAFGACJO_00226 4.6e-41 rpmE2 J Ribosomal protein L31
PAFGACJO_00227 6.1e-241 pts13C G The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
PAFGACJO_00228 2.7e-168 S Alpha/beta hydrolase of unknown function (DUF915)
PAFGACJO_00229 1.1e-124 srtA 3.4.22.70 M sortase family
PAFGACJO_00230 0.0 ppsA 2.7.9.2 H Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
PAFGACJO_00231 3.6e-159 3.2.1.55 GH51 G Right handed beta helix region
PAFGACJO_00232 1.2e-138 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PAFGACJO_00233 1.7e-162 fba 4.1.2.13, 4.1.2.29 G Fructose-1,6-bisphosphate aldolase, class II
PAFGACJO_00234 6e-120 pgm3 G Belongs to the phosphoglycerate mutase family
PAFGACJO_00235 4.4e-85 ptpA 3.1.3.48 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PAFGACJO_00236 7e-93 lemA S LemA family
PAFGACJO_00237 2e-158 htpX O Belongs to the peptidase M48B family
PAFGACJO_00238 1.5e-258 murF 6.3.2.10 M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
PAFGACJO_00239 1.4e-249 cshA 3.6.4.13 F DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
PAFGACJO_00240 0.0 sprD D Domain of Unknown Function (DUF1542)
PAFGACJO_00241 7.7e-166 glsA 3.5.1.2 E Belongs to the glutaminase family
PAFGACJO_00242 7.3e-255 dltD M Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
PAFGACJO_00243 2.8e-35 dltC 6.1.1.13 J Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAFGACJO_00244 1.3e-232 dltB M MBOAT, membrane-bound O-acyltransferase family
PAFGACJO_00245 3.8e-295 dltA 6.1.1.13 H Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
PAFGACJO_00247 6.5e-60 acpS 2.7.6.3, 2.7.8.7, 5.1.1.1 I Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
PAFGACJO_00248 3.7e-210 alr 5.1.1.1 E Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PAFGACJO_00249 3.2e-62 L Toxic component of a toxin-antitoxin (TA) module
PAFGACJO_00250 1.2e-250 U Belongs to the purine-cytosine permease (2.A.39) family
PAFGACJO_00251 6.1e-243 codA 3.5.4.1 F cytosine deaminase
PAFGACJO_00252 3.1e-147 tesE Q hydratase
PAFGACJO_00253 1.8e-113 S (CBS) domain
PAFGACJO_00254 3.3e-103 pth 3.1.1.29 J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
PAFGACJO_00255 0.0 mfd L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PAFGACJO_00256 2.1e-39 yabO J S4 domain protein
PAFGACJO_00257 2.3e-57 divIC D Septum formation initiator
PAFGACJO_00258 9.8e-67 yabR J RNA binding
PAFGACJO_00259 7.4e-253 tilS 2.4.2.8, 6.3.4.19 J Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
PAFGACJO_00260 3.4e-97 hpt 2.4.2.8 F Belongs to the purine pyrimidine phosphoribosyltransferase family
PAFGACJO_00261 0.0 ftsH O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PAFGACJO_00262 3e-170 hslO O Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
PAFGACJO_00263 6.4e-190 dus J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PAFGACJO_00264 4.7e-293 lysS 6.1.1.6 J Belongs to the class-II aminoacyl-tRNA synthetase family
PAFGACJO_00268 1.8e-87 L Transposase IS66 family
PAFGACJO_00269 4.6e-79 L PFAM transposase IS200-family protein
PAFGACJO_00270 3.8e-14 K Cro/C1-type HTH DNA-binding domain
PAFGACJO_00272 2.8e-19
PAFGACJO_00273 1.3e-263 dtpT U amino acid peptide transporter
PAFGACJO_00274 7e-150 yjjH S Calcineurin-like phosphoesterase
PAFGACJO_00277 1.2e-109
PAFGACJO_00278 7.7e-250 EGP Major facilitator Superfamily
PAFGACJO_00279 1.2e-302 aspT P Predicted Permease Membrane Region
PAFGACJO_00280 6.3e-131 racD 5.1.1.13 M Belongs to the aspartate glutamate racemases family
PAFGACJO_00281 1.8e-127 gntR1 K UbiC transcription regulator-associated domain protein
PAFGACJO_00282 3.1e-286 pncB 6.3.4.21 F Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PAFGACJO_00283 1.5e-152 nadE 6.3.1.5 F Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
PAFGACJO_00284 0.0 yhgF K Tex-like protein N-terminal domain protein
PAFGACJO_00285 1.1e-83 ydcK S Belongs to the SprT family
PAFGACJO_00287 0.0 lacL 3.2.1.23 G Belongs to the glycosyl hydrolase 2 family
PAFGACJO_00288 2.2e-184 lacM 3.2.1.23, 3.2.1.35, 3.2.1.51, 3.2.1.97 GH101,GH29 G beta-galactosidase
PAFGACJO_00289 0.0 S Bacterial membrane protein, YfhO
PAFGACJO_00290 1.2e-134 gpmA 5.4.2.11 G Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PAFGACJO_00291 5.9e-168 I alpha/beta hydrolase fold
PAFGACJO_00292 1.1e-214 metC 4.4.1.1, 4.4.1.2, 4.4.1.8 E cystathionine
PAFGACJO_00293 9.2e-119 tcyB E ABC transporter
PAFGACJO_00294 4.8e-134 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
PAFGACJO_00295 2.1e-140 tcyA ET Belongs to the bacterial solute-binding protein 3 family
PAFGACJO_00296 4.6e-268 pepC 3.4.22.40 E Peptidase C1-like family
PAFGACJO_00297 1.9e-124 rpiA 2.7.1.12, 5.3.1.6 G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PAFGACJO_00298 3.8e-50 HA62_12640 S GCN5-related N-acetyl-transferase
PAFGACJO_00299 2.1e-99 dut 3.6.1.23, 4.1.1.36, 6.3.2.5 F dUTP diphosphatase
PAFGACJO_00300 1.3e-254 radA O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
PAFGACJO_00301 9.5e-206 yacL S domain protein
PAFGACJO_00302 1.9e-272 cysS 6.1.1.16, 6.3.1.13 J Belongs to the class-I aminoacyl-tRNA synthetase family
PAFGACJO_00303 2.1e-70 mrnC J Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
PAFGACJO_00304 3e-136 rlmB 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAFGACJO_00305 1.4e-21 rpmG J Belongs to the bacterial ribosomal protein bL33 family
PAFGACJO_00306 1.4e-15 secE U Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
PAFGACJO_00307 3.4e-97 nusG K Participates in transcription elongation, termination and antitermination
PAFGACJO_00308 3.7e-70 rplK J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PAFGACJO_00309 3e-122 rplA J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
PAFGACJO_00310 7e-228 aadAT EK Aminotransferase, class I
PAFGACJO_00312 1.9e-242 M Glycosyl transferase family group 2
PAFGACJO_00313 6.9e-209 mnaA 5.1.3.14 G Belongs to the UDP-N-acetylglucosamine 2-epimerase family
PAFGACJO_00314 1.7e-82 rplJ J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
PAFGACJO_00315 3.2e-54 rplL J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
PAFGACJO_00316 3.4e-48
PAFGACJO_00318 7.7e-40 mscL M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
PAFGACJO_00319 1.1e-56 K transcriptional regulator PadR family
PAFGACJO_00320 1.2e-82 XK27_06920 S Protein of unknown function (DUF1700)
PAFGACJO_00321 4.1e-125 S Putative adhesin
PAFGACJO_00322 0.0 adhE 1.1.1.1, 1.2.1.10 C belongs to the iron- containing alcohol dehydrogenase family
PAFGACJO_00323 1.2e-199 nrdF 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAFGACJO_00324 0.0 nrdE 1.17.4.1 F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PAFGACJO_00325 3.4e-35 nrdH O Glutaredoxin
PAFGACJO_00326 3.5e-91 tadA 3.5.4.33 F Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
PAFGACJO_00327 4.9e-305 dnaX 2.7.7.7 L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAFGACJO_00328 7e-47 yaaK S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PAFGACJO_00329 3.3e-109 recR L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PAFGACJO_00330 4.8e-38 S Protein of unknown function (DUF2508)
PAFGACJO_00331 4.8e-114 tmk 2.7.4.9 F Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PAFGACJO_00332 7.6e-52 yaaQ S Cyclic-di-AMP receptor
PAFGACJO_00333 1.4e-184 holB 2.7.7.7 L DNA polymerase III
PAFGACJO_00334 1.6e-58 yabA L Involved in initiation control of chromosome replication
PAFGACJO_00335 2.1e-157 rsmI 2.1.1.198 H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
PAFGACJO_00336 4e-136 fat 3.1.2.21 I Acyl-ACP thioesterase
PAFGACJO_00337 4.8e-282 ppx3 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
PAFGACJO_00338 0.0 ppk 2.7.4.1 P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
PAFGACJO_00339 8.1e-174 ppx 3.6.1.11, 3.6.1.40 FP exopolyphosphatase
PAFGACJO_00340 9.4e-194 galE 5.1.3.2 M Belongs to the NAD(P)-dependent epimerase dehydratase family
PAFGACJO_00341 5.6e-127 yeaZ 2.3.1.234 O Universal bacterial protein YeaZ
PAFGACJO_00342 1.6e-102 rimI 2.3.1.128 K Ribosomal-protein-alanine acetyltransferase
PAFGACJO_00343 3.6e-196 tsaD 2.3.1.234 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PAFGACJO_00344 3e-131 proC 1.5.1.2 E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
PAFGACJO_00345 1.8e-226 proA 1.2.1.41 E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PAFGACJO_00346 2.6e-138 proB 2.7.2.11 F Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PAFGACJO_00347 2.7e-143 mtnU 3.5.1.3 S Carbon-nitrogen hydrolase
PAFGACJO_00348 2.6e-227 mtnE 2.6.1.83 E Aminotransferase
PAFGACJO_00349 7.3e-183 panE 1.1.1.169 H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PAFGACJO_00350 0.0 uup S ABC transporter, ATP-binding protein
PAFGACJO_00351 8.2e-114 rex K Modulates transcription in response to changes in cellular NADH NAD( ) redox state
PAFGACJO_00353 1.1e-43 groS O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PAFGACJO_00354 5.5e-292 groL O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
PAFGACJO_00355 3.2e-78 S Aminoacyl-tRNA editing domain
PAFGACJO_00356 1.1e-303 ybeC E amino acid
PAFGACJO_00357 0.0 ydaO E amino acid
PAFGACJO_00358 2.7e-39
PAFGACJO_00359 1.7e-67 rmaI K Transcriptional regulator
PAFGACJO_00360 2.3e-156 EGP Major facilitator Superfamily
PAFGACJO_00361 2e-37 EGP Major facilitator Superfamily
PAFGACJO_00362 2e-109 yvyE 3.4.13.9 S YigZ family
PAFGACJO_00363 2.1e-249 comFA L Helicase C-terminal domain protein
PAFGACJO_00364 1.7e-122 comFC S Competence protein
PAFGACJO_00365 1.3e-96 hpf J Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
PAFGACJO_00366 0.0 secA U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PAFGACJO_00367 7.8e-188 prfB J Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
PAFGACJO_00368 3.1e-32 KT PspC domain protein
PAFGACJO_00369 4.9e-52 yvlD S Mycobacterial 4 TMS phage holin, superfamily IV
PAFGACJO_00370 4.6e-177 hprK F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
PAFGACJO_00371 2.9e-156 lgt 2.1.1.199 M Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PAFGACJO_00372 3.8e-182 gpsA 1.1.1.94 I Glycerol-3-phosphate dehydrogenase
PAFGACJO_00373 1.1e-169 galU 2.7.7.9 M UTP-glucose-1-phosphate uridylyltransferase
PAFGACJO_00374 2.4e-138 yrjD S LUD domain
PAFGACJO_00375 1.9e-294 lutB C 4Fe-4S dicluster domain
PAFGACJO_00376 7e-169 lutA C Cysteine-rich domain
PAFGACJO_00377 1.7e-173 trxB 1.8.1.9 C Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
PAFGACJO_00378 1.4e-204 argE 3.5.1.18 E succinyl-diaminopimelate desuccinylase
PAFGACJO_00379 1.9e-161 aatB ET PFAM extracellular solute-binding protein, family 3
PAFGACJO_00380 3.6e-85 ykhA 3.1.2.20 I Thioesterase superfamily
PAFGACJO_00381 0.0 pgm 5.4.2.2, 5.4.2.8 G Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
PAFGACJO_00382 3.6e-114 yfbR S HD containing hydrolase-like enzyme
PAFGACJO_00383 6.9e-14
PAFGACJO_00384 0.0 uvrB L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
PAFGACJO_00385 0.0 uvrA L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
PAFGACJO_00386 2.4e-245 steT E amino acid
PAFGACJO_00387 9.2e-161 rapZ S Displays ATPase and GTPase activities
PAFGACJO_00388 6.5e-187 ybhK S Required for morphogenesis under gluconeogenic growth conditions
PAFGACJO_00389 3.1e-170 whiA K May be required for sporulation
PAFGACJO_00391 8.8e-15
PAFGACJO_00392 2.4e-240 glpT G Major Facilitator Superfamily
PAFGACJO_00393 2.1e-103 clpP 3.4.21.92 O Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
PAFGACJO_00395 1.1e-189 gap 1.2.1.12 G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
PAFGACJO_00396 2.4e-228 pgk 2.7.2.3, 5.3.1.1 F Belongs to the phosphoglycerate kinase family
PAFGACJO_00397 4.8e-142 tpiA 2.7.2.3, 5.3.1.1 G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
PAFGACJO_00398 4.2e-250 eno 4.2.1.11 G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
PAFGACJO_00399 5.6e-245 yifK E Amino acid permease
PAFGACJO_00400 5.8e-291 clcA P chloride
PAFGACJO_00401 1.8e-34 secG U Preprotein translocase
PAFGACJO_00402 2.2e-145 est 3.1.1.1 S Serine aminopeptidase, S33
PAFGACJO_00403 0.0 rnr J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
PAFGACJO_00404 1.4e-83 smpB J the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
PAFGACJO_00405 6.3e-105 yxjI
PAFGACJO_00406 6.2e-136 ung 3.2.2.27 L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PAFGACJO_00407 3.8e-179 pta 2.3.1.8, 3.6.3.21 C phosphate acetyltransferase
PAFGACJO_00408 5.9e-82 ydiB 2.7.1.221, 5.1.1.1 O Hydrolase, P-loop family
PAFGACJO_00409 6.1e-88 K Acetyltransferase (GNAT) domain
PAFGACJO_00410 1.3e-75 S PAS domain
PAFGACJO_00411 8.6e-101 dnaQ 2.7.7.7 L DNA polymerase III
PAFGACJO_00412 3.6e-168 murB 1.3.1.98 M Cell wall formation
PAFGACJO_00413 2.7e-166 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAFGACJO_00414 3e-66 rbsD 5.4.99.62 G Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose
PAFGACJO_00415 3.7e-249 fucP G Major Facilitator Superfamily
PAFGACJO_00416 5e-151 dacA 2.7.7.85 S Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
PAFGACJO_00417 7.6e-126 ybbR S YbbR-like protein
PAFGACJO_00418 3.2e-253 glmM 5.4.2.10 G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PAFGACJO_00419 0.0 glmS 2.6.1.16 M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
PAFGACJO_00420 4.8e-51
PAFGACJO_00421 0.0 oatA I Acyltransferase
PAFGACJO_00422 1.8e-78 K Transcriptional regulator
PAFGACJO_00423 1.1e-147 XK27_02985 S Cof-like hydrolase
PAFGACJO_00424 1.8e-78 lytE M Lysin motif
PAFGACJO_00426 1.2e-134 K response regulator
PAFGACJO_00427 8.1e-274 yclK 2.7.13.3 T Histidine kinase
PAFGACJO_00428 2.8e-154 glcU U sugar transport
PAFGACJO_00429 1.2e-98 lacA 2.3.1.79 S Transferase hexapeptide repeat
PAFGACJO_00430 1.7e-262 pgi 5.3.1.9 G Belongs to the GPI family
PAFGACJO_00431 3.9e-25
PAFGACJO_00433 5.6e-32 xylB 2.7.1.12, 2.7.1.17 G Belongs to the FGGY kinase family
PAFGACJO_00434 9.5e-155 KT YcbB domain
PAFGACJO_00435 2.6e-191 argF 2.1.3.3 E Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
PAFGACJO_00436 6.2e-171 arcC 2.7.2.2 E Belongs to the carbamate kinase family
PAFGACJO_00437 1.7e-160 EG EamA-like transporter family
PAFGACJO_00438 7.6e-48 silP 1.9.3.1, 3.6.3.54 S Cupredoxin-like domain
PAFGACJO_00439 2.4e-49 silP 1.9.3.1, 3.6.3.54 S Cupredoxin-like domain
PAFGACJO_00440 0.0 copA 3.6.3.54 P P-type ATPase
PAFGACJO_00441 3.1e-86
PAFGACJO_00443 2.3e-56
PAFGACJO_00444 6.3e-34 yjcE P Sodium proton antiporter
PAFGACJO_00450 1.7e-14 arpU S Phage transcriptional regulator, ArpU family
PAFGACJO_00451 5.2e-106 S D5 N terminal like
PAFGACJO_00452 3.6e-47
PAFGACJO_00454 3.3e-12
PAFGACJO_00456 1.3e-16 S Helix-turn-helix domain
PAFGACJO_00458 3.9e-132 L Belongs to the 'phage' integrase family
PAFGACJO_00459 1.4e-92
PAFGACJO_00460 0.0 M domain protein
PAFGACJO_00461 4.8e-20
PAFGACJO_00462 8.8e-187 ampC V Beta-lactamase
PAFGACJO_00463 5e-237 arcA 3.5.3.6 E Arginine
PAFGACJO_00464 2.7e-79 argR K Regulates arginine biosynthesis genes
PAFGACJO_00465 7.5e-261 E Arginine ornithine antiporter
PAFGACJO_00466 1e-222 arcD U Amino acid permease
PAFGACJO_00467 2.3e-10
PAFGACJO_00468 1.1e-135 cobQ S CobB/CobQ-like glutamine amidotransferase domain
PAFGACJO_00469 2e-263 murD 3.4.21.10, 6.3.2.13, 6.3.2.9 M Mur ligase, middle domain
PAFGACJO_00470 6e-108 tdk 2.7.1.21 F thymidine kinase
PAFGACJO_00471 1.2e-194 prfA J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PAFGACJO_00472 7e-169 prmB 2.1.1.297, 2.1.1.298 J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
PAFGACJO_00473 2.3e-195 ywlC 2.7.7.87, 3.1.3.48 J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
PAFGACJO_00474 5.8e-233 glyA 2.1.2.1 E Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PAFGACJO_00475 8.6e-116 upp 2.4.2.9 F Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PAFGACJO_00476 0.0 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAFGACJO_00477 1.1e-193 yibE S overlaps another CDS with the same product name
PAFGACJO_00478 4.5e-124 yibF S overlaps another CDS with the same product name
PAFGACJO_00480 2.9e-257 S Uncharacterised protein family (UPF0236)
PAFGACJO_00481 5.9e-233 pyrP F Permease
PAFGACJO_00482 4.9e-120 atpB C it plays a direct role in the translocation of protons across the membrane
PAFGACJO_00483 1.5e-14 atpE C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAFGACJO_00484 1.1e-57 atpF C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PAFGACJO_00485 5.1e-93 atpH C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PAFGACJO_00486 4e-284 atpA 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PAFGACJO_00487 1.9e-164 atpG C Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PAFGACJO_00488 1.1e-267 atpD 3.6.3.14 C Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PAFGACJO_00489 1e-67 atpC C Produces ATP from ADP in the presence of a proton gradient across the membrane
PAFGACJO_00490 1.3e-33 ywzB S Protein of unknown function (DUF1146)
PAFGACJO_00491 6.8e-240 murA 2.5.1.7 M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PAFGACJO_00492 1.9e-178 mbl D Cell shape determining protein MreB Mrl
PAFGACJO_00493 1e-31 S Protein of unknown function (DUF2969)
PAFGACJO_00494 1.1e-220 rodA D Belongs to the SEDS family
PAFGACJO_00495 1.4e-47 gcvH E glycine cleavage
PAFGACJO_00496 1.8e-217 ddl 6.3.2.4 F Belongs to the D-alanine--D-alanine ligase family
PAFGACJO_00497 1.8e-148 2.3.1.19 K Helix-turn-helix XRE-family like proteins
PAFGACJO_00498 7.5e-261 araP U Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
PAFGACJO_00499 0.0 araB 2.7.1.12, 2.7.1.16 G carbohydrate kinase FGGY
PAFGACJO_00500 3.2e-138 araD 4.1.2.17, 5.1.3.4 G links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
PAFGACJO_00501 4.4e-285 araA 5.3.1.4 G Catalyzes the conversion of L-arabinose to L-ribulose
PAFGACJO_00502 4.7e-97 maa 2.3.1.79 S Maltose O-acetyltransferase
PAFGACJO_00503 1.7e-156 ytbE 1.1.1.346 S Aldo keto reductase
PAFGACJO_00504 4.2e-203 araR K Transcriptional regulator
PAFGACJO_00505 4.3e-83 usp6 T universal stress protein
PAFGACJO_00506 5.7e-46
PAFGACJO_00507 1.1e-242 rarA L recombination factor protein RarA
PAFGACJO_00508 3.5e-85 yueI S Protein of unknown function (DUF1694)
PAFGACJO_00509 1.5e-21
PAFGACJO_00510 4e-74 4.4.1.5 E Glyoxalase
PAFGACJO_00511 2.5e-138 S Membrane
PAFGACJO_00512 1.9e-138 S Belongs to the UPF0246 family
PAFGACJO_00513 0.0 oxc 4.1.1.8 EH Belongs to the TPP enzyme family
PAFGACJO_00514 1.1e-261 frc 2.8.3.16 C Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
PAFGACJO_00515 1.1e-235 pbuG S permease
PAFGACJO_00516 3.7e-168 glsA 3.5.1.2 E Belongs to the glutaminase family
PAFGACJO_00517 1.7e-290 gadC E amino acid
PAFGACJO_00518 3.7e-108 rpsD J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PAFGACJO_00519 7.6e-252 ezrA D modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
PAFGACJO_00520 1.7e-215 iscS2 2.8.1.7 E Aminotransferase class V
PAFGACJO_00521 8.5e-229 thiI 2.8.1.4 H Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PAFGACJO_00522 0.0 valS 6.1.1.9 J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
PAFGACJO_00523 1.5e-272 cydA 1.10.3.14 C ubiquinol oxidase
PAFGACJO_00524 8.2e-185 cydB 1.10.3.14 C Cytochrome d ubiquinol oxidase subunit II
PAFGACJO_00525 1.1e-308 cydD CO ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
PAFGACJO_00526 0.0 cydD CO ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
PAFGACJO_00527 3.4e-230 ndh 1.6.99.3 C NADH dehydrogenase
PAFGACJO_00528 6.5e-243 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PAFGACJO_00529 1.8e-121 radC L DNA repair protein
PAFGACJO_00530 1.7e-179 mreB D cell shape determining protein MreB
PAFGACJO_00531 5.9e-152 mreC M Involved in formation and maintenance of cell shape
PAFGACJO_00532 8.7e-93 mreD M rod shape-determining protein MreD
PAFGACJO_00533 3.2e-102 glnP P ABC transporter permease
PAFGACJO_00534 1.2e-117 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
PAFGACJO_00535 2.6e-160 aatB ET ABC transporter substrate-binding protein
PAFGACJO_00536 4.3e-228 ymfF S Peptidase M16 inactive domain protein
PAFGACJO_00537 1.5e-247 ymfH S Peptidase M16
PAFGACJO_00538 2.6e-138 ymfM S Helix-turn-helix domain
PAFGACJO_00539 2.5e-101 pgsA 2.7.8.41, 2.7.8.5 I Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PAFGACJO_00540 3.1e-226 cinA 3.5.1.42 S Belongs to the CinA family
PAFGACJO_00541 7.6e-197 recA L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PAFGACJO_00542 9.5e-209 rny S Endoribonuclease that initiates mRNA decay
PAFGACJO_00543 0.0 mutS L that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PAFGACJO_00544 0.0 mutL L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PAFGACJO_00545 8.7e-102 ruvA 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
PAFGACJO_00546 1e-190 ruvB 3.6.4.12 L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
PAFGACJO_00547 2.8e-191 tgt_1 2.4.2.29 F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
PAFGACJO_00548 1.3e-30 yajC U Preprotein translocase
PAFGACJO_00549 6.1e-182 nrnA 3.1.13.3, 3.1.3.7 S DHHA1 domain protein
PAFGACJO_00550 5.4e-232 cshB 3.6.4.13 JKL DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
PAFGACJO_00551 0.0 alaS 6.1.1.7 J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PAFGACJO_00552 4.1e-43 yrzL S Belongs to the UPF0297 family
PAFGACJO_00553 3.6e-76 yqgF J Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
PAFGACJO_00554 6.1e-48 yrzB S Belongs to the UPF0473 family
PAFGACJO_00555 7.8e-86 cvpA S Colicin V production protein
PAFGACJO_00556 0.0 mutS2 L Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
PAFGACJO_00557 5.1e-53 trxA O Belongs to the thioredoxin family
PAFGACJO_00558 1.6e-97 yslB S Protein of unknown function (DUF2507)
PAFGACJO_00559 2.3e-142 murI 3.6.1.66, 5.1.1.3 M Provides the (R)-glutamate required for cell wall biosynthesis
PAFGACJO_00560 4.8e-105 rdgB 3.6.1.66, 5.1.1.3 F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PAFGACJO_00561 2.9e-93 S Phosphoesterase
PAFGACJO_00562 2.2e-73 ykuL S (CBS) domain
PAFGACJO_00563 7.5e-152 3.1.3.102, 3.1.3.104, 3.1.3.23 S haloacid dehalogenase-like hydrolase
PAFGACJO_00564 8.1e-149 ykuT M mechanosensitive ion channel
PAFGACJO_00565 6.5e-38 WQ51_05790 S protein containing a divergent version of the methyl-accepting chemotaxis-like domain
PAFGACJO_00566 4.9e-28
PAFGACJO_00567 3e-130 pepQ 3.4.13.9 E Creatinase/Prolidase N-terminal domain
PAFGACJO_00568 1.2e-180 ccpA K catabolite control protein A
PAFGACJO_00569 2.1e-133
PAFGACJO_00570 3.8e-131 yebC K Transcriptional regulatory protein
PAFGACJO_00571 7.9e-185 comGA NU Type II IV secretion system protein
PAFGACJO_00572 2.2e-185 comGB NU type II secretion system
PAFGACJO_00573 4.6e-46 comGC U competence protein ComGC
PAFGACJO_00574 2.2e-78 NU general secretion pathway protein
PAFGACJO_00575 1.1e-41
PAFGACJO_00576 3.1e-69
PAFGACJO_00578 7.7e-146 ytxK 2.1.1.72 L N-6 DNA Methylase
PAFGACJO_00579 5.8e-222 ackA 2.7.2.1 F Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PAFGACJO_00580 4.9e-75 S Calcineurin-like phosphoesterase
PAFGACJO_00581 6.6e-93 yutD S Protein of unknown function (DUF1027)
PAFGACJO_00582 1.9e-133 nagD 2.7.1.25, 3.1.3.41 G Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
PAFGACJO_00583 1.9e-102 S Protein of unknown function (DUF1461)
PAFGACJO_00584 5.5e-110 dedA S SNARE-like domain protein
PAFGACJO_00606 5.4e-67 XK27_01125 L PFAM IS66 Orf2 family protein
PAFGACJO_00608 4e-237 L Transposase
PAFGACJO_00609 1.8e-76 traP 1.14.99.57, 6.2.1.3 S enzyme involved in biosynthesis of extracellular polysaccharides
PAFGACJO_00610 1.4e-66 spxA 1.20.4.1 K Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
PAFGACJO_00611 1.4e-121 mecA NOT Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
PAFGACJO_00612 1.2e-199 coiA 3.6.4.12 S Competence protein
PAFGACJO_00613 1.7e-265 pipD E Dipeptidase
PAFGACJO_00614 4.7e-114 yjbH Q Thioredoxin
PAFGACJO_00615 5.2e-116 yjbM 2.7.6.5 S RelA SpoT domain protein
PAFGACJO_00616 5.1e-153 nadK 2.7.1.23 F Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PAFGACJO_00617 5.4e-172 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 G Responsible for synthesis of pseudouridine from uracil
PAFGACJO_00618 2.7e-52 hsdS 3.1.21.3 V type I restriction modification DNA specificity domain protein
PAFGACJO_00619 1.8e-178 L Belongs to the 'phage' integrase family
PAFGACJO_00620 8.7e-49 L Transposase IS66 family
PAFGACJO_00621 5.4e-67 XK27_01125 L PFAM IS66 Orf2 family protein
PAFGACJO_00623 4.5e-77 L Transposase IS66 family
PAFGACJO_00624 1.1e-181 pgl 3.1.1.31 G Lactonase, 7-bladed beta-propeller
PAFGACJO_00625 3.5e-160 rrmA 2.1.1.187 H Methyltransferase
PAFGACJO_00626 4.7e-96 trmL 2.1.1.207 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
PAFGACJO_00627 0.0 ftsK D Belongs to the FtsK SpoIIIE SftA family
PAFGACJO_00628 1.2e-10 S Protein of unknown function (DUF4044)
PAFGACJO_00629 1.7e-57
PAFGACJO_00630 4.5e-76 mraZ K Belongs to the MraZ family
PAFGACJO_00631 1.9e-175 rsmH 2.1.1.199 J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
PAFGACJO_00632 1.5e-56 ftsL D Cell division protein FtsL
PAFGACJO_00633 0.0 ftsI 3.4.16.4 M Penicillin-binding Protein
PAFGACJO_00634 2.6e-180 mraY 2.7.8.13 M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PAFGACJO_00635 7.7e-263 murD 6.3.2.9 M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PAFGACJO_00636 1.8e-201 murG 2.4.1.227, 6.3.2.8 GT28 M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PAFGACJO_00637 6.1e-141 divIB D Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
PAFGACJO_00638 2.9e-254 ftsA D Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
PAFGACJO_00639 3.4e-225 ftsZ D Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PAFGACJO_00640 9.4e-71 sepF D Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
PAFGACJO_00641 3.2e-40 yggT S YGGT family
PAFGACJO_00642 1.3e-145 ylmH S S4 domain protein
PAFGACJO_00643 1.6e-36 divIVA D DivIVA domain protein
PAFGACJO_00644 0.0 ileS 6.1.1.5 J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PAFGACJO_00645 4.2e-32 cspA K Cold shock protein
PAFGACJO_00646 1.1e-98 nudF 3.6.1.13 L ADP-ribose pyrophosphatase
PAFGACJO_00648 1e-125 mtnN 3.2.2.9 E Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PAFGACJO_00649 4.6e-216 iscS 2.8.1.7 E Aminotransferase class V
PAFGACJO_00650 7.5e-58 XK27_04120 S Putative amino acid metabolism
PAFGACJO_00651 3.9e-217 mnmA 2.8.1.13 J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
PAFGACJO_00652 3.7e-122 pgm6 5.4.2.11, 5.4.2.12 G phosphoglycerate mutase
PAFGACJO_00653 9e-119 S Repeat protein
PAFGACJO_00654 0.0 recD2 3.1.11.5 L DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
PAFGACJO_00655 8.1e-174 prs 2.7.6.1 F Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAFGACJO_00656 2.4e-181 dapF 5.1.1.7 E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
PAFGACJO_00657 5.7e-258 lysC 2.7.2.4 E Belongs to the aspartokinase family
PAFGACJO_00658 1.9e-250 lysA 4.1.1.19, 4.1.1.20 E Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
PAFGACJO_00659 6.7e-77 dapD 2.3.1.117, 2.3.1.89 E Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
PAFGACJO_00660 6.5e-223 hipO 3.5.1.47 E Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
PAFGACJO_00661 7.7e-174 dapA 4.3.3.7 E Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PAFGACJO_00662 1e-139 dapB 1.17.1.8 E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
PAFGACJO_00663 5.9e-219 patA 2.6.1.1 E Aminotransferase
PAFGACJO_00664 3e-198 asd 1.2.1.11 E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
PAFGACJO_00665 3.6e-82 KT Putative sugar diacid recognition
PAFGACJO_00666 5.9e-220 EG GntP family permease
PAFGACJO_00667 2.8e-205 glxK 2.7.1.165 G Belongs to the glycerate kinase type-1 family
PAFGACJO_00668 2.2e-57
PAFGACJO_00670 7.3e-139 mltD CBM50 M NlpC P60 family protein
PAFGACJO_00671 1.3e-28
PAFGACJO_00672 3.8e-184 ytlR 2.7.1.91 I Diacylglycerol kinase catalytic
PAFGACJO_00673 9.8e-32 ykzG S Belongs to the UPF0356 family
PAFGACJO_00674 9.7e-80
PAFGACJO_00675 6.2e-102 def 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
PAFGACJO_00676 8.8e-209 pdhA 1.2.4.1, 1.2.4.4 C Dehydrogenase E1 component
PAFGACJO_00677 8.1e-182 pdhB 1.2.4.1 C Transketolase, C-terminal domain protein
PAFGACJO_00678 3.2e-229 pdhC 2.3.1.12 C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
PAFGACJO_00679 1.8e-275 lpdA 1.8.1.4 C Dehydrogenase
PAFGACJO_00680 5.1e-47 yktA S Belongs to the UPF0223 family
PAFGACJO_00681 1.4e-136 suhB 3.1.3.25 G Belongs to the inositol monophosphatase superfamily
PAFGACJO_00682 0.0 typA T GTP-binding protein TypA
PAFGACJO_00683 1.8e-223 ftsW D Belongs to the SEDS family
PAFGACJO_00684 3.9e-44 ylbG S Uncharacterized protein conserved in bacteria (DUF2129)
PAFGACJO_00685 8.5e-99 rsmD 2.1.1.171 L RNA methyltransferase, RsmD family
PAFGACJO_00686 5.1e-90 coaD 2.7.7.3 H Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
PAFGACJO_00687 4.8e-196 ylbL T Belongs to the peptidase S16 family
PAFGACJO_00688 8.4e-79 comEA L Competence protein ComEA
PAFGACJO_00689 3.1e-89 comEB 3.5.4.12 F ComE operon protein 2
PAFGACJO_00690 0.0 comEC S Competence protein ComEC
PAFGACJO_00691 1.6e-148 holA 2.7.7.7 L DNA polymerase III delta subunit
PAFGACJO_00692 5.1e-35 rpsT J Binds directly to 16S ribosomal RNA
PAFGACJO_00693 1.6e-42 rpsO J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PAFGACJO_00694 0.0 rnjB J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAFGACJO_00695 7.8e-163 S Tetratricopeptide repeat
PAFGACJO_00696 3.8e-226 tuf J This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PAFGACJO_00697 2.8e-238 tig D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
PAFGACJO_00698 1.8e-234 clpX O ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PAFGACJO_00699 3.6e-108 engB D Necessary for normal cell division and for the maintenance of normal septation
PAFGACJO_00700 6.1e-60 MA20_27270 S mazG nucleotide pyrophosphohydrolase
PAFGACJO_00701 7.6e-09
PAFGACJO_00702 0.0 uvrC L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
PAFGACJO_00703 2.3e-248 obg S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PAFGACJO_00704 1.7e-176 rnz 3.1.26.11 J Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
PAFGACJO_00705 6.5e-156 XK27_05435 1.1.1.100 S Belongs to the short-chain dehydrogenases reductases (SDR) family
PAFGACJO_00706 0.0 recJ L Single-stranded-DNA-specific exonuclease RecJ
PAFGACJO_00707 9.2e-92 apt 2.4.2.7 F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PAFGACJO_00708 4.8e-87
PAFGACJO_00709 3.4e-11 L PFAM Integrase catalytic region
PAFGACJO_00711 2.9e-08 V CAAX protease self-immunity
PAFGACJO_00712 1.9e-29
PAFGACJO_00715 4.4e-51 E Filamentation induced by cAMP protein fic
PAFGACJO_00716 1e-78 S Fic/DOC family
PAFGACJO_00718 1e-127 rnhA 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAFGACJO_00719 5.8e-211 mvaS 2.3.3.10 I Hydroxymethylglutaryl-CoA synthase
PAFGACJO_00720 5.5e-115 lexA 3.4.21.88 K Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PAFGACJO_00721 1.3e-35 ynzC S UPF0291 protein
PAFGACJO_00722 9.8e-30 yneF S Uncharacterised protein family (UPF0154)
PAFGACJO_00723 1.1e-115 plsC 2.3.1.51 I Acyltransferase
PAFGACJO_00724 4.1e-141 yabB 2.1.1.223 L Methyltransferase small domain
PAFGACJO_00725 5.4e-49 yazA L GIY-YIG catalytic domain protein
PAFGACJO_00726 2e-183 ldhD 1.1.1.28 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAFGACJO_00727 1.2e-143 rpsB J Belongs to the universal ribosomal protein uS2 family
PAFGACJO_00728 2.4e-153 tsf J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PAFGACJO_00729 2e-129 pyrH 2.7.4.22 F Catalyzes the reversible phosphorylation of UMP to UDP
PAFGACJO_00730 1.8e-93 frr J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
PAFGACJO_00731 2.1e-140 uppS 2.5.1.31 H Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PAFGACJO_00732 7.6e-138 cdsA 2.7.7.41 I Belongs to the CDS family
PAFGACJO_00733 3.7e-235 rseP 3.4.21.107, 3.4.21.116 M zinc metalloprotease
PAFGACJO_00734 0.0 proS 6.1.1.15 J Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
PAFGACJO_00735 0.0 polC 2.7.7.7 L Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PAFGACJO_00736 2.5e-83 rimP J Required for maturation of 30S ribosomal subunits
PAFGACJO_00737 2.8e-216 nusA K Participates in both transcription termination and antitermination
PAFGACJO_00738 1e-44 ylxR K Protein of unknown function (DUF448)
PAFGACJO_00739 1.7e-48 ylxQ J ribosomal protein
PAFGACJO_00740 0.0 infB J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
PAFGACJO_00741 2.1e-58 rbfA J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PAFGACJO_00742 4.4e-166 truB 5.4.99.25 J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PAFGACJO_00743 1.3e-176 ribF 2.7.1.26, 2.7.7.2 H Belongs to the ribF family
PAFGACJO_00744 2e-64
PAFGACJO_00745 4.1e-195 hrcA K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
PAFGACJO_00746 5.6e-74 grpE O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PAFGACJO_00747 0.0 dnaK O Heat shock 70 kDa protein
PAFGACJO_00748 5.1e-199 dnaJ O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
PAFGACJO_00749 0.0 lepA M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
PAFGACJO_00750 3.9e-278 pipD E Dipeptidase
PAFGACJO_00751 1.2e-197 mdh 1.1.1.350 C Belongs to the LDH2 MDH2 oxidoreductase family
PAFGACJO_00752 2.3e-173 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
PAFGACJO_00753 7.5e-58
PAFGACJO_00754 1.5e-180 prmA J Ribosomal protein L11 methyltransferase
PAFGACJO_00755 3.2e-130 rsmE 2.1.1.193 J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
PAFGACJO_00756 1.2e-52
PAFGACJO_00757 0.0 relA 2.7.6.5 KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PAFGACJO_00758 2.1e-76 dtd J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
PAFGACJO_00759 1.1e-169 yniA G Phosphotransferase enzyme family
PAFGACJO_00760 0.0 aspS 6.1.1.12 J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
PAFGACJO_00761 5.3e-133 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
PAFGACJO_00762 6.5e-263 glnPH2 P ABC transporter permease
PAFGACJO_00763 1.2e-23 rpsU J Belongs to the bacterial ribosomal protein bS21 family
PAFGACJO_00764 5.6e-69 yqeY S YqeY-like protein
PAFGACJO_00765 1.1e-186 cbh 3.5.1.24 M Linear amide C-N hydrolase, choloylglycine hydrolase family protein
PAFGACJO_00766 1.1e-236 argG 6.3.4.5 E Belongs to the argininosuccinate synthase family. Type 1 subfamily
PAFGACJO_00767 3.9e-262 argH 4.3.2.1 E argininosuccinate lyase
PAFGACJO_00768 2e-55 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_00770 5.3e-184 phoH T phosphate starvation-inducible protein PhoH
PAFGACJO_00771 6e-69 ybeY 2.6.99.2, 3.5.4.5 S Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PAFGACJO_00772 1.5e-62 dgkA 2.7.1.107, 2.7.1.66 M Diacylglycerol kinase
PAFGACJO_00773 2.8e-168 era S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PAFGACJO_00774 5.8e-146 recO L Involved in DNA repair and RecF pathway recombination
PAFGACJO_00775 2e-180 glyQ 6.1.1.14 J glycyl-tRNA synthetase alpha subunit
PAFGACJO_00776 0.0 glyS 6.1.1.14 J Glycyl-tRNA synthetase beta subunit
PAFGACJO_00777 0.0 dnaG L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
PAFGACJO_00778 1.7e-207 sigA K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
PAFGACJO_00779 9.1e-220 patA 2.6.1.1 E Aminotransferase
PAFGACJO_00780 1.7e-125 trmK 2.1.1.217 S SAM-dependent methyltransferase
PAFGACJO_00781 2.3e-153 yqfO 3.5.4.16 S Belongs to the GTP cyclohydrolase I type 2 NIF3 family
PAFGACJO_00782 8.7e-237 pepT 3.4.11.4 E Cleaves the N-terminal amino acid of tripeptides
PAFGACJO_00783 2.3e-30 S Protein of unknown function (DUF2929)
PAFGACJO_00784 0.0 dnaE 2.7.7.7 L DNA polymerase
PAFGACJO_00785 2.1e-271 pyk 2.7.1.40, 2.7.7.4 G Belongs to the pyruvate kinase family
PAFGACJO_00786 2.7e-168 cvfB S S1 domain
PAFGACJO_00787 4.1e-164 xerD D recombinase XerD
PAFGACJO_00788 1.5e-64 ribT K COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
PAFGACJO_00789 1e-137 scpA D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
PAFGACJO_00790 1.7e-105 scpB D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PAFGACJO_00791 4.9e-128 rluB 5.4.99.19, 5.4.99.21, 5.4.99.22 J Belongs to the pseudouridine synthase RsuA family
PAFGACJO_00792 5.5e-101 U Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
PAFGACJO_00793 2e-191 ypbB 5.1.3.1 S Helix-turn-helix domain
PAFGACJO_00794 6.2e-271 recQ1 3.6.4.12 L ATP-dependent DNA helicase RecQ
PAFGACJO_00795 2.5e-13 M Lysin motif
PAFGACJO_00796 8.4e-117 cmk 1.17.7.4, 2.5.1.19, 2.7.1.26, 2.7.4.25, 2.7.7.2, 6.3.2.1 F Belongs to the cytidylate kinase family. Type 1 subfamily
PAFGACJO_00797 1.4e-205 rpsA 1.17.7.4 J Ribosomal protein S1
PAFGACJO_00798 2.7e-249 der 1.1.1.399, 1.1.1.95 S GTPase that plays an essential role in the late steps of ribosome biogenesis
PAFGACJO_00799 2.6e-40 hup L Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
PAFGACJO_00800 1.5e-236 S Tetratricopeptide repeat protein
PAFGACJO_00801 2.9e-221 cca 2.7.7.19, 2.7.7.72 J Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
PAFGACJO_00802 0.0 yfmR S ABC transporter, ATP-binding protein
PAFGACJO_00803 2.2e-192 thyA 2.1.1.45 F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PAFGACJO_00804 5.1e-92 folA 1.5.1.3 H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
PAFGACJO_00805 5.3e-113 hlyIII S protein, hemolysin III
PAFGACJO_00806 4.4e-152 DegV S EDD domain protein, DegV family
PAFGACJO_00807 3.4e-169 ypmR E lipolytic protein G-D-S-L family
PAFGACJO_00808 3.7e-108 ypmS S Uncharacterized protein conserved in bacteria (DUF2140)
PAFGACJO_00809 4.4e-35 yozE S Belongs to the UPF0346 family
PAFGACJO_00810 8.4e-162 ylqF S Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
PAFGACJO_00811 6.5e-142 rnhB 3.1.26.4 L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PAFGACJO_00812 2.7e-160 dprA LU DNA protecting protein DprA
PAFGACJO_00813 0.0 topA 5.99.1.2 L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PAFGACJO_00814 1.6e-168 lacX 5.1.3.3 G Aldose 1-epimerase
PAFGACJO_00815 7.6e-55 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_00816 6.2e-106 plsY 2.3.1.15, 3.5.1.104 I Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
PAFGACJO_00817 0.0 parE 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAFGACJO_00818 0.0 parC 5.99.1.3 L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
PAFGACJO_00819 3.5e-82 F NUDIX domain
PAFGACJO_00820 1.1e-172 ppaC 3.6.1.1 C inorganic pyrophosphatase
PAFGACJO_00821 4.1e-68 yqkB S Belongs to the HesB IscA family
PAFGACJO_00822 1.6e-49
PAFGACJO_00824 5.9e-88 ywnH 2.3.1.183 M Acetyltransferase (GNAT) domain
PAFGACJO_00825 8.7e-63 asp S Asp23 family, cell envelope-related function
PAFGACJO_00826 2.3e-24
PAFGACJO_00827 4.2e-95
PAFGACJO_00828 3.7e-290 gntK 2.7.1.12, 2.7.1.17 G Belongs to the FGGY kinase family
PAFGACJO_00829 5.2e-184 K Transcriptional regulator, LacI family
PAFGACJO_00830 9.1e-201 gntT EG Gluconate
PAFGACJO_00831 1.4e-17 gntT EG Gluconate
PAFGACJO_00832 2.7e-296 gntK 2.7.1.12, 2.7.1.17 G Belongs to the FGGY kinase family
PAFGACJO_00833 2.4e-95 K Acetyltransferase (GNAT) domain
PAFGACJO_00834 4.2e-47
PAFGACJO_00835 3.3e-85 L PFAM transposase IS200-family protein
PAFGACJO_00836 3.1e-22
PAFGACJO_00837 5e-44
PAFGACJO_00838 8e-53 yhaI S Protein of unknown function (DUF805)
PAFGACJO_00839 3.1e-25
PAFGACJO_00840 3e-14 IQ KR domain
PAFGACJO_00841 0.0 hsdR 3.1.21.3 V Subunit R is required for both nuclease and ATPase activities, but not for modification
PAFGACJO_00842 3.4e-193 hsdM 2.1.1.72 V type I restriction-modification system
PAFGACJO_00843 8.4e-18 3.1.21.3 V Type I restriction modification DNA specificity domain protein
PAFGACJO_00844 1.5e-38 higA K Helix-turn-helix XRE-family like proteins
PAFGACJO_00845 2.6e-43 S RelE-like toxin of type II toxin-antitoxin system HigB
PAFGACJO_00846 1.3e-58 3.1.21.3 V Type I restriction modification DNA specificity domain
PAFGACJO_00847 3.1e-167 L restriction endonuclease
PAFGACJO_00848 4.6e-94 mrr L restriction endonuclease
PAFGACJO_00849 0.0 L PLD-like domain
PAFGACJO_00851 3.8e-176 rihA F Inosine-uridine preferring nucleoside hydrolase
PAFGACJO_00852 2.3e-104 T Ion transport 2 domain protein
PAFGACJO_00853 0.0 S Bacterial membrane protein YfhO
PAFGACJO_00854 8e-200 G Transporter, major facilitator family protein
PAFGACJO_00855 7.1e-109 yvrI K sigma factor activity
PAFGACJO_00856 2.6e-64 ydiI Q Thioesterase superfamily
PAFGACJO_00857 6.5e-156 menB 4.1.3.36 H Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
PAFGACJO_00858 1.8e-270 menE 6.2.1.26 H Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily
PAFGACJO_00859 0.0 feoB P transporter of a GTP-driven Fe(2 ) uptake system
PAFGACJO_00860 1.2e-31 feoA P FeoA domain
PAFGACJO_00861 6.5e-145 sufC O FeS assembly ATPase SufC
PAFGACJO_00862 6.6e-240 sufD O FeS assembly protein SufD
PAFGACJO_00863 2.3e-234 sufS 2.8.1.7, 4.4.1.16 E Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PAFGACJO_00864 6.5e-81 nifU C SUF system FeS assembly protein, NifU family
PAFGACJO_00865 3.6e-271 sufB O assembly protein SufB
PAFGACJO_00866 2.8e-57 yitW S Iron-sulfur cluster assembly protein
PAFGACJO_00867 7.2e-161 hipB K Helix-turn-helix
PAFGACJO_00868 1.1e-113 nreC K PFAM regulatory protein LuxR
PAFGACJO_00869 6e-38 S Cytochrome B5
PAFGACJO_00870 1.9e-155 yitU 3.1.3.104 S hydrolase
PAFGACJO_00871 2e-263 rsmF 2.1.1.176, 2.1.1.178 J NOL1 NOP2 sun family protein
PAFGACJO_00872 5.8e-147 f42a O Band 7 protein
PAFGACJO_00873 0.0 lytS 2.7.13.3 T LytS YhcK-type transmembrane receptor domain protein
PAFGACJO_00874 1.7e-128 lytT K response regulator receiver
PAFGACJO_00875 2.2e-54 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_00876 1.9e-66 lrgA S LrgA family
PAFGACJO_00877 2.6e-124 lrgB M LrgB-like family
PAFGACJO_00878 1.9e-178 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
PAFGACJO_00879 2.2e-170 scrK 2.7.1.2, 2.7.1.4 GK ROK family
PAFGACJO_00880 1.4e-184 galR K Periplasmic binding protein-like domain
PAFGACJO_00881 0.0 rafA 3.2.1.22 G alpha-galactosidase
PAFGACJO_00882 7.1e-89 S Protein of unknown function (DUF1440)
PAFGACJO_00883 4.9e-193 fni 1.1.1.88, 5.3.3.2 C Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
PAFGACJO_00884 4.2e-214 mvaK2 2.7.1.36, 2.7.1.43, 2.7.4.2 I phosphomevalonate kinase
PAFGACJO_00885 6.4e-163 mvaD 4.1.1.33 I diphosphomevalonate decarboxylase
PAFGACJO_00886 4.4e-172 mvk 1.1.1.88, 2.3.3.10, 2.7.1.36 I mevalonate kinase
PAFGACJO_00887 0.0 dinG 2.7.7.7, 3.6.4.12 L helicase involved in DNA repair and perhaps also replication
PAFGACJO_00888 2e-86 ypmB S Protein conserved in bacteria
PAFGACJO_00889 1.1e-122 dnaD L DnaD domain protein
PAFGACJO_00890 3e-162 EG EamA-like transporter family
PAFGACJO_00891 0.0 ponA 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein 1A
PAFGACJO_00892 1.3e-116 recU L Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
PAFGACJO_00893 7.8e-100 ypsA S Belongs to the UPF0398 family
PAFGACJO_00894 1.7e-44 gpsB D Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
PAFGACJO_00895 2.2e-84 F Belongs to the NrdI family
PAFGACJO_00896 1e-223 rlmL 2.1.1.173, 2.1.1.264 L Belongs to the methyltransferase superfamily
PAFGACJO_00897 9e-71 rnhA 3.1.26.4 L Ribonuclease HI
PAFGACJO_00898 1.5e-65 esbA S Family of unknown function (DUF5322)
PAFGACJO_00899 1.7e-73 lspA 3.4.23.36 MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins
PAFGACJO_00900 5.3e-175 rluD 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PAFGACJO_00901 8.4e-204 carA 6.3.5.5 F Belongs to the CarA family
PAFGACJO_00902 0.0 carB 6.3.5.5 F Carbamoyl-phosphate synthase
PAFGACJO_00903 0.0 FbpA K Fibronectin-binding protein
PAFGACJO_00904 1.2e-160 degV S EDD domain protein, DegV family
PAFGACJO_00905 9.4e-94
PAFGACJO_00906 2.3e-119 ypgQ S Metal dependent phosphohydrolases with conserved 'HD' motif.
PAFGACJO_00907 4.6e-157 gspA M family 8
PAFGACJO_00908 1.4e-158 S Alpha beta hydrolase
PAFGACJO_00909 4.8e-96 K Acetyltransferase (GNAT) domain
PAFGACJO_00910 1.5e-239 XK27_08635 S UPF0210 protein
PAFGACJO_00911 1.4e-38 gcvR T Belongs to the UPF0237 family
PAFGACJO_00912 5.8e-55 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_00914 1.4e-177
PAFGACJO_00915 2.1e-168 1.1.1.346 C Aldo keto reductase
PAFGACJO_00916 3e-159 K LysR substrate binding domain protein
PAFGACJO_00917 3.6e-79 C Flavodoxin
PAFGACJO_00918 2e-38 yphH S Cupin domain
PAFGACJO_00919 5.8e-74 yeaL S UPF0756 membrane protein
PAFGACJO_00920 9e-243 EGP Major facilitator Superfamily
PAFGACJO_00921 2.7e-73 copY K Copper transport repressor CopY TcrY
PAFGACJO_00922 8.5e-246 yhdP S Transporter associated domain
PAFGACJO_00923 0.0 ubiB S ABC1 family
PAFGACJO_00924 2.5e-144 S DUF218 domain
PAFGACJO_00925 8.3e-69 E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
PAFGACJO_00926 4.9e-58 crcB D Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAFGACJO_00927 6.5e-54 crcB U Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PAFGACJO_00928 0.0 uvrA3 L excinuclease ABC, A subunit
PAFGACJO_00929 3.9e-122 S SNARE associated Golgi protein
PAFGACJO_00930 6.4e-232 N Uncharacterized conserved protein (DUF2075)
PAFGACJO_00931 0.0 dxs 2.2.1.7 H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PAFGACJO_00933 1e-254 yifK E Amino acid permease
PAFGACJO_00934 2.5e-158 endA V DNA/RNA non-specific endonuclease
PAFGACJO_00935 0.0 I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAFGACJO_00936 6e-42 ybaN S Protein of unknown function (DUF454)
PAFGACJO_00937 2.4e-72 S Protein of unknown function (DUF3290)
PAFGACJO_00938 8.1e-114 yviA S Protein of unknown function (DUF421)
PAFGACJO_00939 5e-167 S Alpha/beta hydrolase of unknown function (DUF915)
PAFGACJO_00940 2e-18
PAFGACJO_00941 2.1e-90 ntd 2.4.2.6 F Nucleoside
PAFGACJO_00942 4.8e-151 3.1.3.102, 3.1.3.104 S hydrolase
PAFGACJO_00943 2.3e-36 S Lipopolysaccharide assembly protein A domain
PAFGACJO_00945 2.6e-49 L Belongs to the 'phage' integrase family
PAFGACJO_00948 2.2e-08 S Phage derived protein Gp49-like (DUF891)
PAFGACJO_00949 8e-12 S Phage derived protein Gp49-like (DUF891)
PAFGACJO_00950 8.5e-20 K Helix-turn-helix XRE-family like proteins
PAFGACJO_00951 5.2e-164 I alpha/beta hydrolase fold
PAFGACJO_00952 1.1e-113 frnE Q DSBA-like thioredoxin domain
PAFGACJO_00953 8.1e-55
PAFGACJO_00962 5.3e-128 fabI 1.3.1.10, 1.3.1.9 I Enoyl- acyl-carrier-protein reductase NADH
PAFGACJO_00963 2.4e-136 accA 2.1.3.15, 6.4.1.2 I alpha subunit
PAFGACJO_00964 1.2e-136 accD 2.1.3.15, 6.4.1.2 I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PAFGACJO_00965 8.9e-190 accC 6.3.4.14, 6.4.1.2 I Acetyl-CoA carboxylase biotin carboxylase subunit
PAFGACJO_00966 9.8e-57 fabZ 3.5.1.108, 4.2.1.59 I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
PAFGACJO_00968 5.1e-201 xerS L Belongs to the 'phage' integrase family
PAFGACJO_00969 4.6e-220 sacB 2.4.1.10, 2.4.1.9, 3.2.1.26 GH32,GH68 M Levansucrase/Invertase
PAFGACJO_00970 1.7e-12 sacB 2.4.1.10, 2.4.1.9, 3.2.1.26 GH32,GH68 M Levansucrase/Invertase
PAFGACJO_00971 2.5e-158 rssA S Phospholipase, patatin family
PAFGACJO_00972 9.4e-118 L Integrase
PAFGACJO_00973 3.6e-152 EG EamA-like transporter family
PAFGACJO_00974 2.5e-129 narI 1.7.5.1 C Nitrate reductase
PAFGACJO_00975 1.1e-98 narJ C nitrate reductase molybdenum cofactor assembly chaperone
PAFGACJO_00976 0.0 narH 1.7.5.1 C 4Fe-4S dicluster domain
PAFGACJO_00977 0.0 narG 1.7.5.1 C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
PAFGACJO_00978 2.9e-182 moeB 2.7.7.73, 2.7.7.80 H ThiF family
PAFGACJO_00979 4.9e-82 moaB 2.7.7.75 H May be involved in the biosynthesis of molybdopterin
PAFGACJO_00980 2e-222 moeA 2.10.1.1 H MoeA N-terminal region (domain I and II)
PAFGACJO_00981 7.5e-75 mobB 2.10.1.1, 2.7.7.77 H molybdopterin-guanine dinucleotide biosynthesis protein
PAFGACJO_00982 2.6e-95 mobA 2.7.7.77 H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor
PAFGACJO_00983 3e-44
PAFGACJO_00984 4.3e-61 comP 2.7.13.3 F Sensor histidine kinase
PAFGACJO_00985 1.4e-91 comP 2.7.13.3 F Sensor histidine kinase
PAFGACJO_00986 5.7e-115 nreC K PFAM regulatory protein LuxR
PAFGACJO_00987 4.6e-18
PAFGACJO_00988 4.7e-174
PAFGACJO_00989 1.2e-142 hepT 2.5.1.30, 2.5.1.90 H geranyltranstransferase activity
PAFGACJO_00990 7.5e-214 narK P Transporter, major facilitator family protein
PAFGACJO_00991 2.5e-31 moaD 2.8.1.12 H ThiS family
PAFGACJO_00992 3.5e-62 moaE 2.8.1.12 H MoaE protein
PAFGACJO_00993 7.3e-77 S Flavodoxin
PAFGACJO_00994 1.3e-131 fecD P Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PAFGACJO_00995 2.7e-135 fecE 3.6.3.34 HP AAA domain, putative AbiEii toxin, Type IV TA system
PAFGACJO_00996 1.1e-173 fecB P Periplasmic binding protein
PAFGACJO_00997 3e-173
PAFGACJO_00998 4e-72
PAFGACJO_00999 0.0 S SEC-C Motif Domain Protein
PAFGACJO_01000 1.8e-50
PAFGACJO_01001 1.9e-136 thiM 2.7.1.50 H Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
PAFGACJO_01002 1.6e-146 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
PAFGACJO_01003 3.6e-117 thiE 2.5.1.3 H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
PAFGACJO_01004 1.6e-227 clcA_2 P Chloride transporter, ClC family
PAFGACJO_01005 0.0 malZ 3.2.1.20 GH31 G Belongs to the glycosyl hydrolase 31 family
PAFGACJO_01006 6.4e-111 lssY 3.6.1.27 I Acid phosphatase homologues
PAFGACJO_01009 3.1e-62 XK27_01125 L PFAM IS66 Orf2 family protein
PAFGACJO_01010 1.9e-278 L Transposase IS66 family
PAFGACJO_01012 5.4e-137 L the current gene model (or a revised gene model) may contain a
PAFGACJO_01013 1.6e-12
PAFGACJO_01015 4.1e-15
PAFGACJO_01016 5.9e-62 L Psort location Cytoplasmic, score
PAFGACJO_01017 1.2e-141 rfbD 1.1.1.133, 5.1.3.13 M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
PAFGACJO_01018 3.9e-198 rfbB 4.2.1.46 M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
PAFGACJO_01019 3.7e-38 Z012_10770 M Domain of unknown function (DUF1919)
PAFGACJO_01020 6.7e-40 M COG3774 Mannosyltransferase OCH1 and related enzymes
PAFGACJO_01021 1e-61 cps2I S Psort location CytoplasmicMembrane, score
PAFGACJO_01023 8.6e-59 M Glycosyltransferase like family 2
PAFGACJO_01024 2.6e-44 MA20_17390 GT4 M Glycosyl transferases group 1
PAFGACJO_01025 7e-69 M Glycosyltransferase sugar-binding region containing DXD motif
PAFGACJO_01026 8.5e-22 2.4.1.315 GT2 M Glycosyltransferase like family 2
PAFGACJO_01027 4.8e-82 lsgF M Glycosyl transferase family 2
PAFGACJO_01028 7.7e-51 pglC M Bacterial sugar transferase
PAFGACJO_01029 3.4e-119 ywqD 2.7.10.1 D Capsular exopolysaccharide family
PAFGACJO_01030 2.4e-140 epsB M biosynthesis protein
PAFGACJO_01031 1.7e-166 brpA K Cell envelope-like function transcriptional attenuator common domain protein
PAFGACJO_01032 3e-66 K Transcriptional regulator, HxlR family
PAFGACJO_01033 4.5e-66
PAFGACJO_01034 2.9e-102 K DNA-templated transcription, initiation
PAFGACJO_01035 3.9e-37
PAFGACJO_01036 7.6e-83
PAFGACJO_01037 7.4e-291 glpK 2.7.1.30 F Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PAFGACJO_01038 2.7e-25 dmpI 5.3.2.6 G Belongs to the 4-oxalocrotonate tautomerase family
PAFGACJO_01039 0.0 yjbQ P TrkA C-terminal domain protein
PAFGACJO_01040 3e-270 pipD E Dipeptidase
PAFGACJO_01044 5.1e-195 gtf2 M A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
PAFGACJO_01045 8.5e-226 gtf1 2.4.1.52 GT4 M An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
PAFGACJO_01046 0.0 secA2 U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
PAFGACJO_01047 9.7e-158 asp3 S Accessory Sec secretory system ASP3
PAFGACJO_01048 6.3e-218 asp2 3.4.11.5 S Accessory Sec system GspB-transporter
PAFGACJO_01049 1.5e-195 M transferase activity, transferring glycosyl groups
PAFGACJO_01050 1.5e-145 secY2 U Part of the accessory SecA2 SecY2 system specifically required for export of
PAFGACJO_01051 3.6e-164 nss M transferase activity, transferring glycosyl groups
PAFGACJO_01053 1.8e-15 sraP UW this gene contains a nucleotide ambiguity which may be the result of a sequencing error
PAFGACJO_01054 0.0 M LPXTG-motif cell wall anchor domain protein
PAFGACJO_01055 0.0 trxB2 1.8.1.9 C Thioredoxin domain
PAFGACJO_01056 3.2e-106 ahpC 1.11.1.15 O Peroxiredoxin
PAFGACJO_01057 3.9e-143 sdaAA 4.3.1.17 E L-serine dehydratase, iron-sulfur-dependent, alpha subunit
PAFGACJO_01058 5.8e-123 sdaAB 4.3.1.17 E Serine dehydratase beta chain
PAFGACJO_01060 9.2e-43 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PAFGACJO_01061 2e-168 T Calcineurin-like phosphoesterase superfamily domain
PAFGACJO_01062 2.4e-223 mdtG EGP Major facilitator Superfamily
PAFGACJO_01063 2.6e-129 menG 2.1.1.163, 2.1.1.201 H Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
PAFGACJO_01064 6.4e-157 menA 2.5.1.74 H 1,4-dihydroxy-2-naphthoate
PAFGACJO_01065 7.6e-180 hepT 2.5.1.30, 2.5.1.90 H Belongs to the FPP GGPP synthase family
PAFGACJO_01066 8.5e-136 D nuclear chromosome segregation
PAFGACJO_01067 0.0 lacZ 3.2.1.23 G -beta-galactosidase
PAFGACJO_01068 0.0 lacS G Transporter
PAFGACJO_01069 2.8e-185 lacR K Transcriptional regulator
PAFGACJO_01070 3.7e-173 L transposase, IS605 OrfB family
PAFGACJO_01071 1.7e-50 S CRISPR-associated protein (Cas_Csn2)
PAFGACJO_01072 1.7e-37 cas2 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAFGACJO_01073 6.3e-112 cas1 L CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
PAFGACJO_01074 1e-263 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
PAFGACJO_01075 1.7e-157 cas9 L CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
PAFGACJO_01076 9.5e-83
PAFGACJO_01077 4.8e-159 xth 3.1.11.2 L exodeoxyribonuclease III
PAFGACJO_01078 1.1e-53 S Mazg nucleotide pyrophosphohydrolase
PAFGACJO_01079 2.9e-34
PAFGACJO_01080 8.3e-96 S N-acetylmuramoyl-L-alanine amidase activity
PAFGACJO_01081 5.1e-25 S Bacteriophage holin of superfamily 6 (Holin_LLH)
PAFGACJO_01082 2.7e-40
PAFGACJO_01085 1.3e-64 G cellulose 1,4-beta-cellobiosidase activity
PAFGACJO_01086 4.6e-23
PAFGACJO_01087 2.5e-119 Z012_12235 S Baseplate J-like protein
PAFGACJO_01088 3.7e-09 S Protein of unknown function (DUF2634)
PAFGACJO_01089 4.3e-27
PAFGACJO_01090 3.2e-89
PAFGACJO_01091 6.7e-35
PAFGACJO_01092 7e-53 3.5.1.28 M LysM domain
PAFGACJO_01093 4.5e-29
PAFGACJO_01095 2.2e-14
PAFGACJO_01096 1e-37
PAFGACJO_01097 1.7e-103 Z012_02110 S Protein of unknown function (DUF3383)
PAFGACJO_01098 3.7e-23
PAFGACJO_01100 6.2e-49 Z012_02125
PAFGACJO_01101 6.7e-30
PAFGACJO_01102 1.2e-18
PAFGACJO_01103 1.8e-120
PAFGACJO_01104 2.3e-31 S Domain of unknown function (DUF4355)
PAFGACJO_01106 5.6e-91
PAFGACJO_01107 3.7e-183 S Phage portal protein, SPP1 Gp6-like
PAFGACJO_01108 1.4e-189 S Terminase-like family
PAFGACJO_01109 3e-76 xtmA L Terminase small subunit
PAFGACJO_01110 1.2e-19
PAFGACJO_01113 1.5e-11
PAFGACJO_01116 3.1e-29 rusA L Endodeoxyribonuclease RusA
PAFGACJO_01118 6e-22 S Mazg nucleotide pyrophosphohydrolase
PAFGACJO_01119 4.5e-23
PAFGACJO_01122 5.6e-29 S HNH endonuclease
PAFGACJO_01130 1.3e-52 dnaC 3.4.21.53 L IstB-like ATP binding protein
PAFGACJO_01131 8e-58 S calcium ion binding
PAFGACJO_01132 1.2e-43 ssb L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PAFGACJO_01133 2.4e-92 S Putative HNHc nuclease
PAFGACJO_01134 9.1e-43 S ERF superfamily
PAFGACJO_01135 1.4e-11 S Bacteriophage Mu Gam like protein
PAFGACJO_01141 1.6e-18
PAFGACJO_01142 7e-88 K BRO family, N-terminal domain
PAFGACJO_01143 6.5e-25 K Helix-turn-helix XRE-family like proteins
PAFGACJO_01144 1e-51 K Cro/C1-type HTH DNA-binding domain
PAFGACJO_01145 8.9e-43 E Zn peptidase
PAFGACJO_01146 5.6e-19
PAFGACJO_01147 4.1e-50
PAFGACJO_01149 4.6e-191 L Belongs to the 'phage' integrase family
PAFGACJO_01150 3.6e-64 rplS J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
PAFGACJO_01151 3.7e-260 yfnA E amino acid
PAFGACJO_01152 9.9e-143 trmD 2.1.1.228, 4.6.1.12 J Belongs to the RNA methyltransferase TrmD family
PAFGACJO_01153 6.9e-92 rimM J An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PAFGACJO_01154 4.1e-40 ylqC S Belongs to the UPF0109 family
PAFGACJO_01155 2.2e-44 rpsP J Belongs to the bacterial ribosomal protein bS16 family
PAFGACJO_01156 7.9e-250 ffh 3.6.5.4 U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PAFGACJO_01157 1.1e-56 ylxM S Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
PAFGACJO_01158 2.2e-178 ftsY U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
PAFGACJO_01159 0.0 smc D Required for chromosome condensation and partitioning
PAFGACJO_01160 4.2e-132 rnc 3.1.26.3 J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
PAFGACJO_01161 2.9e-38 acpP IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis
PAFGACJO_01162 5.2e-187 plsX 2.3.1.15 I Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
PAFGACJO_01163 0.0 recG 3.6.4.12 L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PAFGACJO_01164 0.0 yloV S DAK2 domain fusion protein YloV
PAFGACJO_01165 3e-57 asp S Asp23 family, cell envelope-related function
PAFGACJO_01166 7e-26 rpmB J Belongs to the bacterial ribosomal protein bL28 family
PAFGACJO_01167 7e-121 thiN 2.7.6.2 H thiamine pyrophosphokinase
PAFGACJO_01168 1.5e-118 rpe 5.1.3.1 G Belongs to the ribulose-phosphate 3-epimerase family
PAFGACJO_01169 1.7e-162 rsgA 3.1.3.100 S One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
PAFGACJO_01170 0.0 KLT serine threonine protein kinase
PAFGACJO_01171 2.2e-131 stp 3.1.3.16 T phosphatase
PAFGACJO_01172 1.3e-249 sun 2.1.1.176 J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PAFGACJO_01173 9.4e-175 fmt 2.1.2.9 J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PAFGACJO_01174 0.0 priA L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PAFGACJO_01175 1.3e-213 coaBC 4.1.1.36, 6.3.2.5 H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PAFGACJO_01176 7.7e-32 rpoZ 2.7.7.6 K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
PAFGACJO_01177 4.2e-115 gmk 2.7.4.8 F Essential for recycling GMP and indirectly, cGMP
PAFGACJO_01178 4.2e-53
PAFGACJO_01179 1e-261 recN L May be involved in recombinational repair of damaged DNA
PAFGACJO_01180 3.3e-77 argR K Regulates arginine biosynthesis genes
PAFGACJO_01181 4.1e-150 rrmJ 2.1.1.226, 2.1.1.227 J Ribosomal RNA large subunit methyltransferase J
PAFGACJO_01182 1.7e-154 ispA 2.5.1.1, 2.5.1.10, 2.5.1.29, 2.5.1.90 H Belongs to the FPP GGPP synthase family
PAFGACJO_01183 4.8e-42 xseB 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAFGACJO_01184 6.2e-233 xseA 3.1.11.6 L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
PAFGACJO_01185 3.6e-149 folD 1.5.1.5, 3.5.4.9 F Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PAFGACJO_01186 6.1e-70 nusB K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PAFGACJO_01187 2.2e-70 yqhY S Asp23 family, cell envelope-related function
PAFGACJO_01188 8.6e-114 J 2'-5' RNA ligase superfamily
PAFGACJO_01189 6.6e-201 pepP 3.4.11.9, 3.4.13.9 E Creatinase/Prolidase N-terminal domain
PAFGACJO_01190 8.6e-133 yggS S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
PAFGACJO_01191 1e-44 rpmA J Belongs to the bacterial ribosomal protein bL27 family
PAFGACJO_01192 1.8e-53 ysxB J Cysteine protease Prp
PAFGACJO_01193 5.2e-50 rplU J This protein binds to 23S rRNA in the presence of protein L20
PAFGACJO_01194 2.6e-112 K Transcriptional regulator
PAFGACJO_01197 2e-55 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_01198 4.2e-89 dut S Protein conserved in bacteria
PAFGACJO_01199 5.4e-176
PAFGACJO_01200 4.8e-149
PAFGACJO_01201 3.7e-51 S Iron-sulfur cluster assembly protein
PAFGACJO_01202 2.1e-99 msrA 1.8.4.11, 1.8.4.12 C Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PAFGACJO_01203 7.4e-155 P Belongs to the nlpA lipoprotein family
PAFGACJO_01204 3.9e-12
PAFGACJO_01205 2.2e-218 patA 2.6.1.1, 2.6.1.57 E Aminotransferase
PAFGACJO_01206 2e-296 gltX 6.1.1.17, 6.1.1.24 J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PAFGACJO_01207 5.2e-264 glnA 6.3.1.2 E glutamine synthetase
PAFGACJO_01208 3.3e-177 miaA 2.5.1.75 F Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PAFGACJO_01209 5.9e-22 S Protein of unknown function (DUF3042)
PAFGACJO_01210 3.4e-67 yqhL P Rhodanese-like protein
PAFGACJO_01211 5.6e-183 glk 2.7.1.2 G Glucokinase
PAFGACJO_01212 7.4e-36 yqgQ S Bacterial protein of unknown function (DUF910)
PAFGACJO_01213 1.2e-107 gluP 3.4.21.105 S Peptidase, S54 family
PAFGACJO_01214 8.9e-101 ygfA 6.3.3.2 H Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PAFGACJO_01215 4.2e-21 rpmG J Belongs to the bacterial ribosomal protein bL33 family
PAFGACJO_01216 0.0 pbp2b 3.4.16.4 M Penicillin-binding Protein
PAFGACJO_01217 0.0 S membrane
PAFGACJO_01218 4.5e-67 yneR S Belongs to the HesB IscA family
PAFGACJO_01219 1.4e-78 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PAFGACJO_01220 4.7e-117 udk 2.7.1.48 F Cytidine monophosphokinase
PAFGACJO_01221 4.3e-115 rlpA M PFAM NLP P60 protein
PAFGACJO_01222 0.0 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAFGACJO_01223 2.3e-198 pheS 6.1.1.20 J Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PAFGACJO_01224 2.6e-58 yodB K Transcriptional regulator, HxlR family
PAFGACJO_01225 3.1e-92 XK27_09705 6.1.1.14 S Metal dependent phosphohydrolases with conserved 'HD' motif.
PAFGACJO_01226 6.3e-145 spoU 2.1.1.185 J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PAFGACJO_01227 3.6e-42 acyP 3.6.1.7 C Belongs to the acylphosphatase family
PAFGACJO_01228 5.9e-169 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAFGACJO_01229 3e-69 def_1 3.5.1.31, 3.5.1.88 J Removes the formyl group from the N-terminal Met of newly synthesized proteins
PAFGACJO_01230 9.5e-234 V MatE
PAFGACJO_01231 1.5e-267 yjeM E Amino Acid
PAFGACJO_01232 6.3e-279 arlS 2.7.13.3 T Histidine kinase
PAFGACJO_01233 1.5e-121 K response regulator
PAFGACJO_01234 1.1e-28 rpmF J Belongs to the bacterial ribosomal protein bL32 family
PAFGACJO_01235 2.9e-99 yceD S Uncharacterized ACR, COG1399
PAFGACJO_01236 5.3e-209 ylbM S Belongs to the UPF0348 family
PAFGACJO_01237 8.4e-139 yqeM Q Methyltransferase
PAFGACJO_01238 2.4e-59 rsfS J Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
PAFGACJO_01239 1.4e-110 nadD 2.7.6.3, 2.7.7.18 H Hydrolase, HD family
PAFGACJO_01240 4.3e-123 nadD 2.7.7.18, 3.6.1.55 H Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PAFGACJO_01241 1.9e-47 yhbY J RNA-binding protein
PAFGACJO_01242 2.1e-218 yqeH S Ribosome biogenesis GTPase YqeH
PAFGACJO_01243 2.4e-95 yqeG S HAD phosphatase, family IIIA
PAFGACJO_01244 3.3e-56 rplT J Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
PAFGACJO_01245 2.3e-27 rpmI J Belongs to the bacterial ribosomal protein bL35 family
PAFGACJO_01246 3.7e-85 infC J IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PAFGACJO_01247 8.1e-171 dnaI L Primosomal protein DnaI
PAFGACJO_01248 2.4e-224 dnaB L replication initiation and membrane attachment
PAFGACJO_01249 1.2e-79 nrdR K Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PAFGACJO_01250 6.3e-100 coaE 2.7.1.24 F Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
PAFGACJO_01251 5.3e-158 fpg 3.2.2.23, 4.2.99.18 L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
PAFGACJO_01252 0.0 polA 2.7.7.7 L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
PAFGACJO_01253 5.4e-116 yoaK S Protein of unknown function (DUF1275)
PAFGACJO_01254 2.5e-119 ybhL S Belongs to the BI1 family
PAFGACJO_01255 4.5e-252 mpl 6.3.2.4, 6.3.2.45, 6.3.2.8 M Belongs to the MurCDEF family
PAFGACJO_01256 1.6e-19 yefM 2.3.1.15 D Antitoxin component of a toxin-antitoxin (TA) module
PAFGACJO_01257 5.9e-47 yafQ S Bacterial toxin of type II toxin-antitoxin system, YafQ
PAFGACJO_01258 2.5e-118 pheT 6.1.1.20 J Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
PAFGACJO_01259 1.7e-56 ytpP 2.7.1.180, 5.3.4.1 CO Thioredoxin
PAFGACJO_01260 7.5e-58 ytzB S Small secreted protein
PAFGACJO_01261 1.3e-168 glsA 3.5.1.2 E Belongs to the glutaminase family
PAFGACJO_01262 3.1e-181 iolS C Aldo keto reductase
PAFGACJO_01263 1.2e-253 tagE 2.4.1.52 GT4 M Glycosyl transferases group 1
PAFGACJO_01264 0.0 2.7.7.7, 3.4.21.110 D Leucine-rich repeat (LRR) protein
PAFGACJO_01265 1.1e-121 trmB 2.1.1.297, 2.1.1.33 J Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
PAFGACJO_01266 6.6e-218 ecsB U ABC transporter
PAFGACJO_01267 3.9e-136 ecsA V ABC transporter, ATP-binding protein
PAFGACJO_01268 8.3e-78 hit FG histidine triad
PAFGACJO_01270 3.4e-129 prsA 5.2.1.8 M Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
PAFGACJO_01271 0.0 L AAA domain
PAFGACJO_01272 2.4e-220 yhaO L Ser Thr phosphatase family protein
PAFGACJO_01273 9.4e-38 yheA S Belongs to the UPF0342 family
PAFGACJO_01274 0.0 pbp2A 2.4.1.129, 3.4.16.4 GT51 M penicillin-binding protein
PAFGACJO_01275 0.0 argS 6.1.1.19 J Arginyl-tRNA synthetase
PAFGACJO_01276 2.1e-151 thiD 2.5.1.3, 2.7.1.49, 2.7.4.7, 4.1.99.17 H Phosphomethylpyrimidine kinase
PAFGACJO_01277 1.1e-167 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily. LDH family
PAFGACJO_01279 3.3e-40
PAFGACJO_01280 1e-43
PAFGACJO_01281 2.4e-212 folP 2.5.1.15 H dihydropteroate synthase
PAFGACJO_01282 3.7e-105 xtp 2.5.1.15, 3.6.1.66 F Ham1 family
PAFGACJO_01283 5.3e-226 folC 6.3.2.12, 6.3.2.17 H Belongs to the folylpolyglutamate synthase family
PAFGACJO_01284 1.8e-104 folE 2.7.6.3, 3.5.4.16 F GTP cyclohydrolase 1
PAFGACJO_01285 1.3e-90 folK 1.13.11.81, 2.5.1.15, 2.7.6.3, 3.5.4.16, 4.1.2.25, 5.1.99.8 H 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
PAFGACJO_01286 1e-54 folB 1.13.11.81, 2.5.1.15, 2.7.6.3, 4.1.2.25, 5.1.99.8 H Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PAFGACJO_01287 3.4e-70
PAFGACJO_01289 1.9e-43
PAFGACJO_01290 1.1e-116 S CAAX protease self-immunity
PAFGACJO_01291 1.8e-31
PAFGACJO_01292 1.7e-160 rbsK 2.7.1.15 H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
PAFGACJO_01293 2.4e-184 rbsR K Periplasmic binding proteins and sugar binding domain of LacI family
PAFGACJO_01294 1.1e-112
PAFGACJO_01295 6.6e-116 dck 2.7.1.74 F deoxynucleoside kinase
PAFGACJO_01296 8.3e-177 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
PAFGACJO_01297 1.9e-86 uspA T Belongs to the universal stress protein A family
PAFGACJO_01298 1.1e-275 pepV 3.5.1.18 E dipeptidase PepV
PAFGACJO_01299 3.5e-152 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PAFGACJO_01300 3.8e-256 ytgP S Polysaccharide biosynthesis protein
PAFGACJO_01301 1.3e-41
PAFGACJO_01302 0.0 leuS 6.1.1.4 J Belongs to the class-I aminoacyl-tRNA synthetase family
PAFGACJO_01303 1.9e-217 metK 2.5.1.6 H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PAFGACJO_01304 6.7e-93 tag 3.2.2.20 L glycosylase
PAFGACJO_01305 1.8e-257 EGP Major facilitator Superfamily
PAFGACJO_01306 1.3e-84 perR P Belongs to the Fur family
PAFGACJO_01307 5.3e-232 cycA E Amino acid permease
PAFGACJO_01308 9.7e-103 V VanZ like family
PAFGACJO_01309 1e-23
PAFGACJO_01310 2.2e-85 S Short repeat of unknown function (DUF308)
PAFGACJO_01311 2.2e-78 S Psort location Cytoplasmic, score
PAFGACJO_01312 3.3e-283 dinB 2.7.7.7 L impB/mucB/samB family C-terminal domain
PAFGACJO_01313 1e-75 hsp O Belongs to the small heat shock protein (HSP20) family
PAFGACJO_01314 6.2e-154 yeaE S Aldo keto
PAFGACJO_01315 1.5e-236 preA 1.3.1.1 C 4Fe-4S dicluster domain
PAFGACJO_01316 3.6e-235 preT 1.3.1.1 E Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
PAFGACJO_01317 4.2e-149 xth 3.1.11.2 L exodeoxyribonuclease III
PAFGACJO_01318 1.1e-87 lytE M LysM domain protein
PAFGACJO_01319 0.0 oppD EP Psort location Cytoplasmic, score
PAFGACJO_01320 2.3e-41 lytE M LysM domain protein
PAFGACJO_01321 2.3e-159 sufD O Uncharacterized protein family (UPF0051)
PAFGACJO_01322 2e-111 nrdG 1.97.1.4 O Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
PAFGACJO_01323 0.0 nrdD 1.1.98.6 F Ribonucleoside-triphosphate reductase
PAFGACJO_01324 5.3e-235 lmrB EGP Major facilitator Superfamily
PAFGACJO_01325 6e-97 2.3.1.128 K Acetyltransferase (GNAT) domain
PAFGACJO_01335 1.5e-39 ykuJ S Protein of unknown function (DUF1797)
PAFGACJO_01336 9.7e-178 mprF I Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PAFGACJO_01337 5.9e-199 cpoA GT4 M Glycosyltransferase, group 1 family protein
PAFGACJO_01338 4.5e-230 mgs 2.4.1.337 GT4 M Glycosyltransferase, group 1 family protein
PAFGACJO_01339 0.0 ptsI 2.7.3.9 G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
PAFGACJO_01340 2.7e-39 ptsH G phosphocarrier protein HPR
PAFGACJO_01341 2.9e-27
PAFGACJO_01342 0.0 clpE O Belongs to the ClpA ClpB family
PAFGACJO_01343 1.7e-100 S Pfam:DUF3816
PAFGACJO_01344 8e-142 manA 1.14.13.81, 5.3.1.8, 5.4.2.8 G MucBP domain
PAFGACJO_01345 2.5e-113
PAFGACJO_01346 2.6e-155 V ABC transporter, ATP-binding protein
PAFGACJO_01347 9.3e-65 gntR1 K Transcriptional regulator, GntR family
PAFGACJO_01348 3.3e-48 M NlpC P60 family protein
PAFGACJO_01349 4e-109 S Peptidase, M23
PAFGACJO_01350 4e-60 M Peptidase_C39 like family
PAFGACJO_01351 6.4e-09 S Domain of unknown function (DUF4767)
PAFGACJO_01352 9.6e-40 S Acyltransferase family
PAFGACJO_01353 3.7e-34 S Peptidase_C39 like family
PAFGACJO_01354 4.5e-60 M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
PAFGACJO_01355 2.1e-102 S Psort location CytoplasmicMembrane, score
PAFGACJO_01356 2.2e-309 prfC J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PAFGACJO_01357 4.3e-227 brpA K Cell envelope-like function transcriptional attenuator common domain protein
PAFGACJO_01358 1.3e-162 yueF S AI-2E family transporter
PAFGACJO_01359 2.4e-24
PAFGACJO_01360 1.3e-54 M repeat protein
PAFGACJO_01361 1.4e-57 acmD 3.2.1.17 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
PAFGACJO_01362 8.4e-63 cps3I G Acyltransferase family
PAFGACJO_01363 1.5e-75 waaB GT4 M Glycosyl transferases group 1
PAFGACJO_01364 9.5e-232 rfbX S Membrane protein involved in the export of O-antigen and teichoic acid
PAFGACJO_01365 1.2e-210 glf 5.4.99.9 M UDP-galactopyranose mutase
PAFGACJO_01366 9.8e-33
PAFGACJO_01367 1.7e-71 S Acyltransferase family
PAFGACJO_01368 4.8e-150 ykoT GT2 M Glycosyl transferase family 2
PAFGACJO_01369 2.1e-80 M Core-2/I-Branching enzyme
PAFGACJO_01370 1.3e-63 M Domain of unknown function (DUF4422)
PAFGACJO_01371 8.7e-28 M biosynthesis protein
PAFGACJO_01372 1.6e-92 M transferase activity, transferring glycosyl groups
PAFGACJO_01373 2.1e-70 cps3F
PAFGACJO_01374 2.5e-118 rfbP 2.7.8.6 M Bacterial sugar transferase
PAFGACJO_01375 1.3e-173 yfdH 2.4.2.53 GT2 M Glycosyltransferase, group 2 family protein
PAFGACJO_01376 2.5e-146 cps1D M Domain of unknown function (DUF4422)
PAFGACJO_01377 4.2e-136 recX 2.4.1.337 GT4 S Regulatory protein RecX
PAFGACJO_01378 4.9e-31
PAFGACJO_01379 3.9e-34 S Protein of unknown function (DUF2922)
PAFGACJO_01380 1.8e-151 yihY S Belongs to the UPF0761 family
PAFGACJO_01381 2.6e-280 yjeM E Amino Acid
PAFGACJO_01382 2.3e-257 E Arginine ornithine antiporter
PAFGACJO_01383 2.1e-221 arcT 2.6.1.1 E Aminotransferase
PAFGACJO_01384 1.3e-167 map 3.4.11.18 E Methionine Aminopeptidase
PAFGACJO_01385 6.7e-78 fld C Flavodoxin
PAFGACJO_01386 1.3e-67 gtcA S Teichoic acid glycosylation protein
PAFGACJO_01387 7.1e-56
PAFGACJO_01388 2.2e-207 mnaA 5.1.3.14 G Belongs to the UDP-N-acetylglucosamine 2-epimerase family
PAFGACJO_01390 1.9e-231 yfmL L DEAD DEAH box helicase
PAFGACJO_01391 4.5e-191 mocA S Oxidoreductase
PAFGACJO_01392 1.2e-61 S Domain of unknown function (DUF4828)
PAFGACJO_01393 6e-108 yvdD 3.2.2.10 S Belongs to the LOG family
PAFGACJO_01394 1e-165 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
PAFGACJO_01395 3.5e-296 gshF 6.3.2.2 H Belongs to the glutamate--cysteine ligase type 1 family
PAFGACJO_01396 6.5e-198 S Protein of unknown function (DUF3114)
PAFGACJO_01397 6e-79 yjcF 3.5.4.33, 4.4.1.8 K protein acetylation
PAFGACJO_01398 4.9e-120 ybhL S Belongs to the BI1 family
PAFGACJO_01399 5.2e-134 yhjX P Major Facilitator Superfamily
PAFGACJO_01400 1.8e-21
PAFGACJO_01401 3e-75 K LytTr DNA-binding domain
PAFGACJO_01402 1e-67 S Protein of unknown function (DUF3021)
PAFGACJO_01403 1.8e-154 3.2.1.96, 3.5.1.28 GH73 M N-acetylmuramoyl-L-alanine amidase
PAFGACJO_01404 4.8e-84 ogt 2.1.1.63 L Methyltransferase
PAFGACJO_01405 1.4e-124 pnb C nitroreductase
PAFGACJO_01406 4.3e-92
PAFGACJO_01407 1.1e-81 yvbK 3.1.3.25 K GNAT family
PAFGACJO_01408 8.9e-248 gor 1.8.1.7 C pyridine nucleotide-disulfide oxidoreductase
PAFGACJO_01409 2.6e-206 amtB P ammonium transporter
PAFGACJO_01410 1.1e-86 3.6.4.12 S PD-(D/E)XK nuclease family transposase
PAFGACJO_01411 2.3e-69 S PFAM Archaeal ATPase
PAFGACJO_01412 6.2e-49 S PFAM Archaeal ATPase
PAFGACJO_01413 1.5e-303 XK27_08510 L Type III restriction protein res subunit
PAFGACJO_01414 5.7e-52
PAFGACJO_01415 1.8e-153 cylA V ABC transporter
PAFGACJO_01416 3.7e-146 cylB V ABC-2 type transporter
PAFGACJO_01417 1.4e-75 K LytTr DNA-binding domain
PAFGACJO_01418 6.3e-61 S Protein of unknown function (DUF3021)
PAFGACJO_01420 2.5e-183 L Plasmid pRiA4b ORF-3-like protein
PAFGACJO_01421 1.4e-110 rcfA 4.1.99.16, 4.2.3.22, 4.2.3.75 K Transcriptional regulator, Crp Fnr family
PAFGACJO_01422 7e-98 dps P Belongs to the Dps family
PAFGACJO_01423 2.5e-36 copZ P PFAM Heavy metal transport detoxification protein
PAFGACJO_01424 6.5e-297 cadA 3.6.3.3, 3.6.3.5 P E1-E2 ATPase
PAFGACJO_01425 2.1e-58 K transcriptional regulator
PAFGACJO_01426 5.1e-41 K transcriptional regulator
PAFGACJO_01427 1.3e-257 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_01428 1.7e-87 tpx 1.11.1.15 O Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
PAFGACJO_01429 3.1e-259 rumA 2.1.1.190 J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PAFGACJO_01430 2.3e-187 yegS 2.7.1.107 G Lipid kinase
PAFGACJO_01431 1.8e-275 gatB 6.1.1.12, 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAFGACJO_01432 5.9e-277 gatA 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
PAFGACJO_01433 3.5e-49 gatC 6.3.5.6, 6.3.5.7 J Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PAFGACJO_01434 1.2e-202 camS S sex pheromone
PAFGACJO_01435 0.0 ligA 6.5.1.2 L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PAFGACJO_01436 0.0 pcrA 3.6.4.12 L ATP-dependent DNA helicase
PAFGACJO_01437 2.7e-213 purK2 6.3.4.18 F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
PAFGACJO_01438 1.7e-99 xpt 2.4.2.22, 2.4.2.7 F Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
PAFGACJO_01439 3e-113 acmC 3.2.1.96 NU mannosyl-glycoprotein
PAFGACJO_01440 2.1e-140 IQ reductase
PAFGACJO_01441 5.6e-65 rpsI J Belongs to the universal ribosomal protein uS9 family
PAFGACJO_01442 4.5e-79 rplM J This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PAFGACJO_01443 5.5e-141 truA 5.4.99.12 J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
PAFGACJO_01444 3.4e-141 ecfT U Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAFGACJO_01445 6e-152 ecfA2 3.6.3.55 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAFGACJO_01446 1.1e-144 ecfA1 P ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
PAFGACJO_01447 1.1e-62 rplQ J Ribosomal protein L17
PAFGACJO_01448 2.8e-171 rpoA 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAFGACJO_01449 2.3e-63 rpsK J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PAFGACJO_01450 4.7e-58 rpsM J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PAFGACJO_01451 1.4e-14 rpmJ J Belongs to the bacterial ribosomal protein bL36 family
PAFGACJO_01452 1.2e-32 infA J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PAFGACJO_01453 8.1e-125 adk 2.7.4.3 F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
PAFGACJO_01454 8.8e-240 secY U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
PAFGACJO_01455 8.9e-64 rplO J Binds to the 23S rRNA
PAFGACJO_01456 2.9e-24 rpmD J Ribosomal protein L30
PAFGACJO_01457 2.2e-85 rpsE J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PAFGACJO_01458 6.6e-57 rplR J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
PAFGACJO_01459 4.6e-94 rplF J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PAFGACJO_01460 1.3e-66 rpsH J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PAFGACJO_01461 4e-29 rpsN J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PAFGACJO_01462 1.4e-95 rplE J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PAFGACJO_01463 2.6e-49 rplX J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PAFGACJO_01464 1.1e-59 rplN J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PAFGACJO_01465 5e-41 rpsQ J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PAFGACJO_01466 8.4e-28 rpmC J Belongs to the universal ribosomal protein uL29 family
PAFGACJO_01467 3.5e-76 rplP J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PAFGACJO_01468 6.1e-112 rpsC J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PAFGACJO_01469 2.8e-52 rplV J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PAFGACJO_01470 1.4e-46 rpsS J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PAFGACJO_01471 5.4e-150 rplB J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PAFGACJO_01472 2.2e-45 rplW J One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
PAFGACJO_01473 5.5e-107 rplD J Forms part of the polypeptide exit tunnel
PAFGACJO_01474 1.5e-118 rplC J One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PAFGACJO_01475 3.4e-49 rpsJ J Involved in the binding of tRNA to the ribosomes
PAFGACJO_01476 0.0 fusA J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PAFGACJO_01477 1.2e-82 rpsG J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
PAFGACJO_01478 3.9e-72 rpsL J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PAFGACJO_01479 2.7e-120 pilD 3.4.23.43 NOU Bacterial Peptidase A24 N-terminal domain
PAFGACJO_01480 2.7e-200 ykiI
PAFGACJO_01481 0.0 rpoC 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAFGACJO_01482 0.0 rpoB 2.7.7.6 K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PAFGACJO_01483 1e-110 K Bacterial regulatory proteins, tetR family
PAFGACJO_01484 0.0 clpC O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
PAFGACJO_01485 4.4e-77 ctsR K Belongs to the CtsR family
PAFGACJO_01486 2.1e-196 adhP 1.1.1.1 C alcohol dehydrogenase
PAFGACJO_01487 1.1e-178 S Hydrolases of the alpha beta superfamily
PAFGACJO_01491 8e-48 S calcium ion binding
PAFGACJO_01493 1.3e-25
PAFGACJO_01494 2.7e-14
PAFGACJO_01495 1.3e-17 S sequence-specific DNA binding
PAFGACJO_01496 3.3e-57 sip L Belongs to the 'phage' integrase family
PAFGACJO_01502 1.1e-113 dak 2.7.1.74, 2.7.1.76 F deoxynucleoside kinase
PAFGACJO_01503 5e-276 lysP E amino acid
PAFGACJO_01504 1.3e-09 2.3.1.128 J Acetyltransferase (GNAT) domain
PAFGACJO_01505 8.8e-119 lssY 3.6.1.27 I phosphatase
PAFGACJO_01506 2.1e-82 S Threonine/Serine exporter, ThrE
PAFGACJO_01507 2.1e-129 thrE S Putative threonine/serine exporter
PAFGACJO_01508 1e-30 cspC K Cold shock protein
PAFGACJO_01509 2.4e-124 sirR K iron dependent repressor
PAFGACJO_01510 9.1e-167 czcD P cation diffusion facilitator family transporter
PAFGACJO_01511 1.2e-115 S membrane
PAFGACJO_01512 2.2e-109 S VIT family
PAFGACJO_01513 2.7e-82 usp1 T Belongs to the universal stress protein A family
PAFGACJO_01514 1.8e-133 glnQ 3.6.3.21 E ABC transporter, ATP-binding protein
PAFGACJO_01515 9.7e-152 glnH ET ABC transporter
PAFGACJO_01516 3.2e-110 gluC P ABC transporter permease
PAFGACJO_01517 4e-108 glnP P ABC transporter permease
PAFGACJO_01518 3.5e-219 S CAAX protease self-immunity
PAFGACJO_01519 0.0 rnjA J An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
PAFGACJO_01520 9.3e-56
PAFGACJO_01521 3.4e-74 merR K MerR HTH family regulatory protein
PAFGACJO_01522 6.1e-269 lmrB EGP Major facilitator Superfamily
PAFGACJO_01523 4.7e-118 S Domain of unknown function (DUF4811)
PAFGACJO_01524 4e-164 rluD 5.4.99.23, 5.4.99.28, 5.4.99.29 J Responsible for synthesis of pseudouridine from uracil
PAFGACJO_01526 0.0 mprF 2.3.2.3 S Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
PAFGACJO_01527 2.2e-93 thiJ 2.7.11.1, 3.5.1.124 S DJ-1/PfpI family
PAFGACJO_01528 2.5e-183 I Alpha beta
PAFGACJO_01529 2.8e-266 emrY EGP Major facilitator Superfamily
PAFGACJO_01530 4.7e-117 ung2 3.2.2.27 L Uracil-DNA glycosylase
PAFGACJO_01531 3.6e-252 yjjP S Putative threonine/serine exporter
PAFGACJO_01532 1.1e-158 mleR K LysR family
PAFGACJO_01533 1.3e-252 yflS P Sodium:sulfate symporter transmembrane region
PAFGACJO_01534 2.4e-267 frdC 1.3.5.4 C FAD binding domain
PAFGACJO_01535 2.1e-260 fumC 4.2.1.2 C Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
PAFGACJO_01536 9.1e-303 sfcA 1.1.1.38, 4.1.1.101 C Malic enzyme
PAFGACJO_01537 1.6e-157 mleR K LysR family
PAFGACJO_01538 2.3e-110 ppiB 5.2.1.8 G PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PAFGACJO_01539 2.5e-205 adhA 1.1.1.1 C Zinc-binding alcohol dehydrogenase family protein
PAFGACJO_01540 7.3e-294 L PFAM plasmid pRiA4b ORF-3 family protein
PAFGACJO_01541 2.7e-168 L transposase, IS605 OrfB family
PAFGACJO_01542 1.9e-264 S Uncharacterized protein conserved in bacteria (DUF2252)
PAFGACJO_01545 2e-22
PAFGACJO_01546 5.4e-200 galM 5.1.3.3 G Catalyzes the interconversion of alpha and beta anomers of maltose
PAFGACJO_01547 2e-55 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_01548 3e-75
PAFGACJO_01549 2.1e-219 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PAFGACJO_01550 7.7e-130 ponA V Beta-lactamase enzyme family
PAFGACJO_01551 6.5e-284 gtfA 2.4.1.7 GH13 G Sucrose glucosyltransferase
PAFGACJO_01552 1.4e-215 uhpT EGP Major facilitator Superfamily
PAFGACJO_01553 4e-256 ytjP 3.5.1.18 E Dipeptidase
PAFGACJO_01554 1.3e-274 arcD S C4-dicarboxylate anaerobic carrier
PAFGACJO_01555 5.6e-180 yfeX P Peroxidase
PAFGACJO_01556 3.7e-93 lsa S ABC transporter
PAFGACJO_01557 5.8e-92 lsa S ABC transporter
PAFGACJO_01558 6.5e-136 I alpha/beta hydrolase fold
PAFGACJO_01559 1.6e-180 MA20_14895 S Conserved hypothetical protein 698
PAFGACJO_01560 1.6e-171 mccA 2.5.1.134, 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
PAFGACJO_01561 1.8e-178 hemH 4.99.1.1, 4.99.1.9 H Catalyzes the ferrous insertion into protoporphyrin IX
PAFGACJO_01562 3.9e-232 mntH P H( )-stimulated, divalent metal cation uptake system
PAFGACJO_01563 5e-80 Q Methyltransferase
PAFGACJO_01564 1.4e-116 ktrA P domain protein
PAFGACJO_01565 1e-238 ktrB P Potassium uptake protein
PAFGACJO_01566 0.0 mycA 4.2.1.53 S Myosin-crossreactive antigen
PAFGACJO_01567 1.3e-137 nfrA 1.5.1.38, 1.5.1.39 C nitroreductase
PAFGACJO_01568 6.6e-125 phoU P Plays a role in the regulation of phosphate uptake
PAFGACJO_01569 1.1e-136 pstB 3.6.3.27 P Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
PAFGACJO_01570 6.5e-154 pstA P Phosphate transport system permease protein PstA
PAFGACJO_01571 6.6e-154 pstC P probably responsible for the translocation of the substrate across the membrane
PAFGACJO_01572 1.1e-158 pstS P Phosphate
PAFGACJO_01573 2.4e-130 K Transcriptional regulatory protein, C-terminal domain protein
PAFGACJO_01574 8.6e-136 cbiO P ABC transporter
PAFGACJO_01575 2e-128 P Cobalt transport protein
PAFGACJO_01576 8.2e-185 nikMN P PDGLE domain
PAFGACJO_01577 3.2e-166 ureD O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PAFGACJO_01578 3.6e-114 ureG KO Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PAFGACJO_01579 1.9e-132 ureF O Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
PAFGACJO_01580 8.6e-78 ureE O Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
PAFGACJO_01581 0.0 ureC 3.5.1.5 E Amidohydrolase family
PAFGACJO_01582 2.1e-69 ureB 3.5.1.5 E Urease beta subunit
PAFGACJO_01583 3.7e-48 ureA 3.5.1.5 E Urease, gamma subunit
PAFGACJO_01584 5.6e-97 ureI S AmiS/UreI family transporter
PAFGACJO_01585 6.9e-223 P ammonium transporter
PAFGACJO_01586 4.4e-17 K Transcriptional regulator, HxlR family
PAFGACJO_01587 6.9e-184
PAFGACJO_01588 1.2e-97 2.3.1.128 K acetyltransferase
PAFGACJO_01589 1.3e-216 L Transposase
PAFGACJO_01590 5.2e-150
PAFGACJO_01591 6.4e-99 efp J Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PAFGACJO_01592 8.4e-183 S Phosphotransferase system, EIIC
PAFGACJO_01593 2.1e-63 infB UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_01594 2.5e-90 UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_01595 0.0 UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_01596 4e-128 UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_01597 0.0 UW LPXTG-motif cell wall anchor domain protein
PAFGACJO_01599 5.2e-156 metQ_4 P Belongs to the nlpA lipoprotein family
PAFGACJO_01600 2.6e-88 luxS 4.4.1.21 H Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
PAFGACJO_01601 2.1e-123 O Zinc-dependent metalloprotease
PAFGACJO_01602 4.1e-115 S Membrane
PAFGACJO_01603 2.5e-197 adh 1.1.1.1, 1.1.1.14 E alcohol dehydrogenase
PAFGACJO_01604 1.4e-77 S Domain of unknown function (DUF4767)
PAFGACJO_01605 4.3e-13
PAFGACJO_01606 9.1e-204 cytX U Belongs to the purine-cytosine permease (2.A.39) family
PAFGACJO_01607 6.6e-98 wecD3 K PFAM GCN5-related N-acetyltransferase
PAFGACJO_01608 6.1e-67 P CorA-like Mg2+ transporter protein
PAFGACJO_01609 8.8e-87 P CorA-like Mg2+ transporter protein
PAFGACJO_01610 1.2e-79
PAFGACJO_01611 9.7e-112 M Lysin motif
PAFGACJO_01612 1.3e-194 EGP Major facilitator Superfamily
PAFGACJO_01613 1.5e-98 ywlG S Belongs to the UPF0340 family
PAFGACJO_01614 1.2e-157 spoU 2.1.1.185 J Methyltransferase
PAFGACJO_01616 1.7e-17 L Transposase
PAFGACJO_01617 6.8e-43 hxlR K Transcriptional regulator, HxlR family
PAFGACJO_01618 7e-160 qor 1.1.1.1, 1.6.5.5 C Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
PAFGACJO_01621 5.6e-113 mloB K Putative ATP-dependent DNA helicase recG C-terminal
PAFGACJO_01622 1.6e-301 guaA 2.3.1.128, 6.3.5.2 F Catalyzes the synthesis of GMP from XMP
PAFGACJO_01624 2e-219 S cog cog1373
PAFGACJO_01625 3.7e-176 coaA 2.7.1.33 F Pantothenic acid kinase
PAFGACJO_01626 0.0 ltaS 2.7.8.20 M Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
PAFGACJO_01627 1e-159 EG EamA-like transporter family
PAFGACJO_01628 1.2e-252 nox C NADH oxidase
PAFGACJO_01629 5.3e-240 nox C NADH oxidase
PAFGACJO_01630 0.0 helD 3.6.4.12 L DNA helicase
PAFGACJO_01631 3.4e-115 dedA S SNARE associated Golgi protein
PAFGACJO_01632 1.5e-126 3.1.3.73 G phosphoglycerate mutase
PAFGACJO_01633 2.4e-226 hflX S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PAFGACJO_01634 1.4e-10
PAFGACJO_01635 4.4e-31 S Transglycosylase associated protein
PAFGACJO_01637 5.4e-181 1.1.1.28 CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAFGACJO_01638 1.3e-219 V domain protein
PAFGACJO_01639 1.6e-94 K Transcriptional regulator (TetR family)
PAFGACJO_01640 9.8e-39 pspC KT positive regulation of macromolecule biosynthetic process
PAFGACJO_01641 2.2e-151
PAFGACJO_01642 3.1e-17 3.2.1.14 GH18
PAFGACJO_01643 4.3e-82 zur P Belongs to the Fur family
PAFGACJO_01644 2.2e-102 gmk2 2.7.4.8 F Guanylate kinase
PAFGACJO_01645 6.9e-74 apfA 2.7.7.72, 3.6.1.61 F Nudix hydrolase
PAFGACJO_01646 5.4e-256 yfnA E Amino Acid
PAFGACJO_01647 5e-235 EGP Sugar (and other) transporter
PAFGACJO_01648 2.1e-230
PAFGACJO_01649 3.9e-209 potD P ABC transporter
PAFGACJO_01650 4.9e-140 potC P ABC transporter permease
PAFGACJO_01651 4.5e-146 potB P ABC transporter permease
PAFGACJO_01652 5.9e-205 potA 3.6.3.30, 3.6.3.31 P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
PAFGACJO_01653 0.0 pepX 3.4.14.11 E Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
PAFGACJO_01654 3e-178 pip 3.4.11.5 E Releases the N-terminal proline from various substrates
PAFGACJO_01655 2.5e-09 L Helix-turn-helix domain
PAFGACJO_01656 0.0 pacL 3.6.3.8 P P-type ATPase
PAFGACJO_01657 2.6e-85 dps P Belongs to the Dps family
PAFGACJO_01658 8.6e-257 yagE E amino acid
PAFGACJO_01659 7.2e-118 gph 3.1.3.18 S HAD hydrolase, family IA, variant
PAFGACJO_01660 1.1e-156 3.6.4.12 S PD-(D/E)XK nuclease family transposase
PAFGACJO_01661 1.7e-128 L Helix-turn-helix domain
PAFGACJO_01662 1.7e-156 L hmm pf00665
PAFGACJO_01664 1.9e-24 S Domain of unknown function (DUF4767)
PAFGACJO_01667 4.7e-17
PAFGACJO_01668 4.6e-10
PAFGACJO_01669 1.4e-19 S Domain of unknown function (DUF4767)
PAFGACJO_01670 7.8e-121 agrA K LytTr DNA-binding domain
PAFGACJO_01671 1.9e-181 yumC 1.18.1.2, 1.19.1.1, 1.8.1.9 C Ferredoxin--NADP reductase
PAFGACJO_01672 9.5e-183 iunH2 3.2.2.1 F nucleoside hydrolase
PAFGACJO_01673 4.3e-138 IQ KR domain
PAFGACJO_01674 3.3e-133 S membrane transporter protein
PAFGACJO_01675 2.7e-97 S ABC-type cobalt transport system, permease component
PAFGACJO_01676 5.8e-250 cbiO1 S ABC transporter, ATP-binding protein
PAFGACJO_01677 4.1e-113 P Cobalt transport protein
PAFGACJO_01678 1.6e-52 yvlA
PAFGACJO_01679 0.0 yjcE P Sodium proton antiporter
PAFGACJO_01680 3.8e-52 ypaA S Protein of unknown function (DUF1304)
PAFGACJO_01681 2.8e-190 D Alpha beta
PAFGACJO_01682 1e-72 K Transcriptional regulator
PAFGACJO_01683 9.1e-161
PAFGACJO_01684 2.5e-121 1.6.5.5 C Zinc-binding dehydrogenase
PAFGACJO_01685 1.9e-32 1.6.5.5 C Zinc-binding dehydrogenase
PAFGACJO_01686 1.9e-256 G PTS system Galactitol-specific IIC component
PAFGACJO_01687 1e-210 EGP Major facilitator Superfamily
PAFGACJO_01688 3e-135 V ABC transporter
PAFGACJO_01689 3.9e-109
PAFGACJO_01690 5.2e-14
PAFGACJO_01691 7.1e-63
PAFGACJO_01692 3.9e-195 lplA 6.3.1.20 H Lipoate-protein ligase
PAFGACJO_01693 2.5e-80 uspA T universal stress protein
PAFGACJO_01694 0.0 tetP J elongation factor G
PAFGACJO_01695 8.9e-167 GK ROK family
PAFGACJO_01696 1.8e-240 brnQ U Component of the transport system for branched-chain amino acids
PAFGACJO_01697 1e-139 aroD S Serine hydrolase (FSH1)
PAFGACJO_01698 7.4e-242 yagE E amino acid
PAFGACJO_01699 0.0 xfp 4.1.2.22, 4.1.2.9 G Phosphoketolase
PAFGACJO_01700 2.8e-134 gntR K UbiC transcription regulator-associated domain protein
PAFGACJO_01701 1e-87 ybaK J Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
PAFGACJO_01702 9.8e-285 pipD E Dipeptidase
PAFGACJO_01703 0.0 yfiC V ABC transporter
PAFGACJO_01704 8.5e-307 lmrA V ABC transporter, ATP-binding protein
PAFGACJO_01705 2.4e-189 ldhA 1.1.1.28 C Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PAFGACJO_01706 5.4e-135 glpF U Belongs to the MIP aquaporin (TC 1.A.8) family
PAFGACJO_01707 2.3e-162
PAFGACJO_01708 5.4e-158 3.2.1.52 GH20 G Xylose isomerase domain protein TIM barrel
PAFGACJO_01709 2.8e-146 S AI-2E family transporter
PAFGACJO_01710 4.2e-135 XK27_07210 6.1.1.6 S B3 4 domain
PAFGACJO_01711 2.3e-78 yybA 2.3.1.57 K Transcriptional regulator
PAFGACJO_01712 1e-90 M1-874 K Domain of unknown function (DUF1836)
PAFGACJO_01713 1.9e-89 GM epimerase
PAFGACJO_01714 7.5e-155 ypdB V (ABC) transporter
PAFGACJO_01715 1.5e-242 yhdP S Transporter associated domain
PAFGACJO_01716 9.9e-85 nrdI F Belongs to the NrdI family
PAFGACJO_01717 3.2e-74 S 3-demethylubiquinone-9 3-methyltransferase
PAFGACJO_01718 3.4e-192 yeaN P Transporter, major facilitator family protein
PAFGACJO_01719 7.5e-288 zwf 1.1.1.363, 1.1.1.49 G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PAFGACJO_01720 1.4e-275 gnd 1.1.1.343, 1.1.1.44 H Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
PAFGACJO_01721 3.6e-39
PAFGACJO_01722 0.0 lacS G Transporter
PAFGACJO_01723 1.6e-79 uspA T universal stress protein
PAFGACJO_01724 1.7e-143 S Uncharacterised protein family (UPF0236)
PAFGACJO_01725 1.8e-78 K AsnC family
PAFGACJO_01726 1.6e-228 gltP U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
PAFGACJO_01727 1.6e-95 dedA 3.1.3.1 S SNARE associated Golgi protein
PAFGACJO_01728 2.7e-180 galR K Transcriptional regulator
PAFGACJO_01729 2.7e-282 galT 2.7.7.12 G UDP-glucose--hexose-1-phosphate uridylyltransferase
PAFGACJO_01730 5e-226 galK 2.7.1.6 F Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
PAFGACJO_01731 3.5e-177 celE 3.2.1.4 GH5,GH9 E GDSL-like Lipase/Acylhydrolase family
PAFGACJO_01732 4.4e-146 ptp3 3.1.3.48 T Tyrosine phosphatase family
PAFGACJO_01733 3.4e-91 yxkA S Phosphatidylethanolamine-binding protein
PAFGACJO_01734 9.1e-36
PAFGACJO_01735 7.7e-52
PAFGACJO_01736 4.3e-203
PAFGACJO_01737 7.5e-83 greA K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
PAFGACJO_01738 1.2e-135 pnuC H nicotinamide mononucleotide transporter
PAFGACJO_01739 5.4e-158 ytbE 1.1.1.346 S Aldo keto reductase
PAFGACJO_01740 2.6e-126 K response regulator
PAFGACJO_01741 8.2e-182 T PhoQ Sensor
PAFGACJO_01742 3.4e-135 macB2 V ABC transporter, ATP-binding protein
PAFGACJO_01743 0.0 ysaB V FtsX-like permease family
PAFGACJO_01744 2.4e-158 metAA 2.3.1.46 E Transfers an acetyl group from acetyl-CoA to
PAFGACJO_01745 1.2e-169 cysK 2.5.1.47 E Belongs to the cysteine synthase cystathionine beta- synthase family
PAFGACJO_01746 1e-53 K helix_turn_helix, mercury resistance
PAFGACJO_01747 8.4e-287 cls I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PAFGACJO_01748 5.3e-196 EGP Major facilitator Superfamily
PAFGACJO_01749 1.9e-89 ymdB S Macro domain protein
PAFGACJO_01750 1.8e-65 K Helix-turn-helix domain
PAFGACJO_01751 0.0 pepO 3.4.24.71 O Peptidase family M13
PAFGACJO_01752 1.4e-47
PAFGACJO_01753 2.3e-232 S Putative metallopeptidase domain
PAFGACJO_01754 4.3e-206 3.1.3.1 S associated with various cellular activities
PAFGACJO_01755 1.1e-118 mpg 3.2.2.21 L Belongs to the DNA glycosylase MPG family
PAFGACJO_01756 5.8e-64 yeaO S Protein of unknown function, DUF488
PAFGACJO_01758 1.2e-115 yrkL S Flavodoxin-like fold
PAFGACJO_01759 4e-53
PAFGACJO_01760 2e-15 S Domain of unknown function (DUF4767)
PAFGACJO_01761 4.5e-135 3.6.4.12 S PD-(D/E)XK nuclease family transposase
PAFGACJO_01762 1.1e-49
PAFGACJO_01763 8.9e-206 nrnB S DHHA1 domain
PAFGACJO_01764 2e-230 S Uncharacterized protein conserved in bacteria (DUF2325)
PAFGACJO_01765 5.4e-248 brnQ U Component of the transport system for branched-chain amino acids
PAFGACJO_01766 2.2e-105 NU mannosyl-glycoprotein
PAFGACJO_01767 1.7e-145 S Putative ABC-transporter type IV
PAFGACJO_01768 5.4e-273 S ABC transporter, ATP-binding protein
PAFGACJO_01769 5.4e-08
PAFGACJO_01770 1.1e-34 arsR K helix_turn_helix, Arsenical Resistance Operon Repressor
PAFGACJO_01771 2.1e-180 arsB 1.20.4.1 P Sodium Bile acid symporter family
PAFGACJO_01772 2.9e-69 arsC 1.20.4.1 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PAFGACJO_01773 4.2e-56 cadX K Bacterial regulatory protein, arsR family
PAFGACJO_01774 2.8e-95 cadD P Cadmium resistance transporter
PAFGACJO_01775 1.2e-24 K Helix-turn-helix domain
PAFGACJO_01776 5.7e-30 WQ51_00220 K Helix-turn-helix domain
PAFGACJO_01777 4.8e-103 S Protein of unknown function (DUF3278)
PAFGACJO_01779 5e-73 M PFAM NLP P60 protein
PAFGACJO_01780 2.9e-182 ABC-SBP S ABC transporter
PAFGACJO_01781 1.9e-153 XK27_08840 U Belongs to the binding-protein-dependent transport system permease family
PAFGACJO_01782 4.8e-137 XK27_08845 S ABC transporter, ATP-binding protein
PAFGACJO_01783 4.4e-95 P Cadmium resistance transporter
PAFGACJO_01784 1.5e-55 K Transcriptional regulator, ArsR family
PAFGACJO_01785 9.2e-237 mepA V MATE efflux family protein
PAFGACJO_01786 7.2e-55 trxA O Belongs to the thioredoxin family
PAFGACJO_01787 6.6e-131 terC P membrane
PAFGACJO_01788 5.3e-167 rluA 5.4.99.23 J Responsible for synthesis of pseudouridine from uracil
PAFGACJO_01789 1.5e-166 corA P CorA-like Mg2+ transporter protein
PAFGACJO_01790 1.2e-274 pipD E Dipeptidase
PAFGACJO_01791 1.6e-241 pbuX F xanthine permease
PAFGACJO_01792 5e-249 nhaC C Na H antiporter NhaC
PAFGACJO_01793 5.3e-284 S C4-dicarboxylate anaerobic carrier
PAFGACJO_01794 5.5e-126 pgm3 3.1.3.73 G phosphoglycerate mutase family
PAFGACJO_01795 3.8e-41
PAFGACJO_01796 0.0 ltaS 2.7.8.20 M Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
PAFGACJO_01797 9.3e-206 gldA 1.1.1.6 C dehydrogenase
PAFGACJO_01798 6.1e-125 S Alpha beta hydrolase
PAFGACJO_01799 7.4e-217 dacA 3.4.16.4 M Belongs to the peptidase S11 family
PAFGACJO_01800 2.7e-100
PAFGACJO_01802 5.2e-124 yciB M ErfK YbiS YcfS YnhG
PAFGACJO_01803 1.2e-249 S Putative peptidoglycan binding domain
PAFGACJO_01804 9.3e-110 nnrD 4.2.1.136, 5.1.99.6 H Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
PAFGACJO_01805 1e-87
PAFGACJO_01806 5.2e-245 hisS 6.1.1.21 J histidyl-tRNA synthetase
PAFGACJO_01807 5.1e-218 yttB EGP Major facilitator Superfamily
PAFGACJO_01808 6.3e-103
PAFGACJO_01809 1e-24
PAFGACJO_01810 5.5e-175 scrR K Transcriptional regulator, LacI family
PAFGACJO_01811 6.7e-240 acm2 3.2.1.17 NU Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
PAFGACJO_01812 4.1e-50 czrA K Transcriptional regulator, ArsR family
PAFGACJO_01813 7.3e-36
PAFGACJO_01814 0.0 yhcA V ABC transporter, ATP-binding protein
PAFGACJO_01815 2.6e-118 devA 3.6.3.25 V ABC transporter, ATP-binding protein
PAFGACJO_01816 8.3e-172 hrtB V ABC transporter permease
PAFGACJO_01817 5.5e-89 ygfC K transcriptional regulator (TetR family)
PAFGACJO_01818 9.9e-191 tdh 1.1.1.14 E Alcohol dehydrogenase GroES-like domain
PAFGACJO_01819 1e-290 mntH P H( )-stimulated, divalent metal cation uptake system
PAFGACJO_01820 7.8e-30
PAFGACJO_01821 0.0 thrS 6.1.1.3 J Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PAFGACJO_01823 8.1e-227 yxiO S Vacuole effluxer Atg22 like
PAFGACJO_01824 3.3e-255 npp S type I phosphodiesterase nucleotide pyrophosphatase
PAFGACJO_01825 6.4e-241 E amino acid
PAFGACJO_01826 1.4e-181 panE 1.1.1.169 H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
PAFGACJO_01828 6.7e-212 yxjG_1 E methionine synthase, vitamin-B12 independent
PAFGACJO_01829 1.6e-41 S Cytochrome B5
PAFGACJO_01830 5.4e-09 S Cytochrome B5
PAFGACJO_01831 1.8e-39 S Cytochrome B5
PAFGACJO_01832 2.7e-76 elaA S Gnat family
PAFGACJO_01833 2.3e-119 GM NmrA-like family
PAFGACJO_01834 2.8e-51 hxlR K Transcriptional regulator, HxlR family
PAFGACJO_01835 4.3e-109 XK27_02070 S Nitroreductase family
PAFGACJO_01836 5.8e-82 K Transcriptional regulator, HxlR family
PAFGACJO_01837 3.8e-227
PAFGACJO_01838 3.8e-210 EGP Major facilitator Superfamily
PAFGACJO_01839 1.4e-256 pepC 3.4.22.40 E aminopeptidase
PAFGACJO_01840 9.9e-112 ylbE GM NAD dependent epimerase dehydratase family protein
PAFGACJO_01841 0.0 pepN 3.4.11.2 E aminopeptidase
PAFGACJO_01842 1.2e-92 folT S ECF transporter, substrate-specific component
PAFGACJO_01843 4.9e-198 asnA 6.3.1.1 F aspartate--ammonia ligase
PAFGACJO_01844 1.3e-256 asnS 6.1.1.22 J Asparaginyl-tRNA synthetase
PAFGACJO_01845 1.1e-121 yhjH 3.1.4.52 T Putative diguanylate phosphodiesterase
PAFGACJO_01846 3.1e-110 2.7.7.65 T GGDEF domain
PAFGACJO_01847 3e-62 2.7.7.65 T GGDEF domain
PAFGACJO_01848 1.3e-130 yfeJ 6.3.5.2 F glutamine amidotransferase
PAFGACJO_01849 1.3e-63 yneR
PAFGACJO_01850 1.2e-112 GM NAD(P)H-binding
PAFGACJO_01851 2.6e-187 S membrane
PAFGACJO_01852 1.8e-104 K Transcriptional regulator C-terminal region
PAFGACJO_01853 7.1e-161 akr5f 1.1.1.346 S reductase
PAFGACJO_01854 3.7e-133 K Transcriptional regulator
PAFGACJO_01855 5.2e-184 ansA 3.5.1.1 EJ L-asparaginase, type I
PAFGACJO_01856 1e-155 ypuA S Protein of unknown function (DUF1002)
PAFGACJO_01857 1.1e-228 aadAT EK Aminotransferase, class I
PAFGACJO_01858 3.8e-176 ldh 1.1.1.27 C Belongs to the LDH MDH superfamily
PAFGACJO_01859 6e-154 tesE Q hydratase
PAFGACJO_01860 2.5e-142 S Alpha beta hydrolase
PAFGACJO_01861 1.7e-85 lacA S transferase hexapeptide repeat
PAFGACJO_01862 1.6e-33 K Transcriptional regulator
PAFGACJO_01863 1.9e-83 C Flavodoxin
PAFGACJO_01864 7e-10 S Oxidoreductase, aldo keto reductase family protein
PAFGACJO_01866 9.9e-09 1.1.1.100 S Enoyl-(Acyl carrier protein) reductase
PAFGACJO_01867 3.3e-114 P nitric oxide dioxygenase activity
PAFGACJO_01868 6.3e-106 S Peptidase propeptide and YPEB domain
PAFGACJO_01869 4e-232 T GHKL domain
PAFGACJO_01870 1.8e-119 T Transcriptional regulatory protein, C terminal
PAFGACJO_01871 8.9e-162 mleP3 S Membrane transport protein
PAFGACJO_01872 2.6e-118 1.1.1.193, 3.5.4.26 H RibD C-terminal domain
PAFGACJO_01876 2.8e-198 2.7.13.3 T GHKL domain
PAFGACJO_01877 3.3e-117 K LytTr DNA-binding domain
PAFGACJO_01878 8.3e-19 comA V ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
PAFGACJO_01879 1e-24
PAFGACJO_01880 5.2e-19 relB L Addiction module antitoxin, RelB DinJ family
PAFGACJO_01881 2.5e-86 XK27_08850 J Aminoacyl-tRNA editing domain
PAFGACJO_01882 1.3e-64 arsC 1.20.4.1 T Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PAFGACJO_01883 1.1e-197 V Beta-lactamase
PAFGACJO_01884 1.9e-95 hpt 2.4.2.8 F Belongs to the purine pyrimidine phosphoribosyltransferase family
PAFGACJO_01885 8.3e-125 yhiD S MgtC family
PAFGACJO_01886 7.8e-117 S GyrI-like small molecule binding domain
PAFGACJO_01887 1.5e-07
PAFGACJO_01888 1.7e-111 S Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
PAFGACJO_01889 7.1e-50 azlD E Branched-chain amino acid transport
PAFGACJO_01890 1.5e-118 azlC E azaleucine resistance protein AzlC
PAFGACJO_01891 1.3e-254 K Aminotransferase class I and II
PAFGACJO_01892 1.5e-294 S amidohydrolase
PAFGACJO_01893 1.2e-165 S reductase
PAFGACJO_01895 5.2e-92 2.3.1.183 M Acetyltransferase GNAT family
PAFGACJO_01896 1.7e-113 lepB 3.4.21.89 U Belongs to the peptidase S26 family
PAFGACJO_01897 1.4e-247 yxbA 6.3.1.12 S ATP-grasp enzyme
PAFGACJO_01898 2.8e-293 murE 6.3.2.13, 6.3.2.7 M Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PAFGACJO_01899 0.0 asnB 6.3.5.4 E Asparagine synthase
PAFGACJO_01900 0.0 gidA D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
PAFGACJO_01901 3.1e-251 mnmE S Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PAFGACJO_01902 6.1e-132 jag S R3H domain protein
PAFGACJO_01903 4.5e-130 yidC U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
PAFGACJO_01904 2e-58 rnpA 3.1.26.5 J RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
PAFGACJO_01905 3.4e-14 rpmH J Belongs to the bacterial ribosomal protein bL34 family
PAFGACJO_01906 2.2e-251 dnaA L it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PAFGACJO_01907 2.2e-207 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PAFGACJO_01908 1.7e-34 yaaA S S4 domain protein YaaA
PAFGACJO_01909 2.1e-205 recF L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PAFGACJO_01910 0.0 gyrB 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAFGACJO_01911 0.0 gyrA 5.99.1.3 L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
PAFGACJO_01912 1.2e-48 rpsF J Binds together with S18 to 16S ribosomal RNA
PAFGACJO_01913 7.5e-79 ssb L Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
PAFGACJO_01914 1.6e-35 rpsR J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PAFGACJO_01916 1.9e-25
PAFGACJO_01917 2.3e-22 T PemK-like, MazF-like toxin of type II toxin-antitoxin system
PAFGACJO_01921 4.5e-41 doc S Fic/DOC family
PAFGACJO_01922 8.5e-11
PAFGACJO_01926 5.8e-08 dnaN 2.7.7.7 L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
PAFGACJO_01939 2e-41
PAFGACJO_01941 1.1e-70 D CobQ CobB MinD ParA nucleotide binding domain protein
PAFGACJO_01942 1e-12 S Replication initiator protein A (RepA) N-terminus
PAFGACJO_01947 8.6e-17
PAFGACJO_01948 3.3e-22 gp17a S Terminase-like family
PAFGACJO_01949 2.1e-22 1.1.98.6, 3.6.3.14, 3.6.3.15, 4.1.1.35 L Participates in initiation and elongation during chromosome replication
PAFGACJO_01950 6.2e-138 gp17a S Terminase-like family
PAFGACJO_01951 3.7e-35
PAFGACJO_01952 4.3e-50
PAFGACJO_01954 2.2e-62
PAFGACJO_01960 9e-28
PAFGACJO_01961 3.2e-33 GT2,GT4 O gp58-like protein
PAFGACJO_01962 1e-16
PAFGACJO_01964 2.9e-07
PAFGACJO_01966 1.4e-11 hol S COG5546 Small integral membrane protein
PAFGACJO_01969 4.7e-79 xerH L Belongs to the 'phage' integrase family
PAFGACJO_01970 1.5e-51 D Phage-related minor tail protein
PAFGACJO_01972 4.5e-52
PAFGACJO_01973 1.1e-67
PAFGACJO_01974 1.2e-105 fliC N bacterial-type flagellum-dependent cell motility
PAFGACJO_01975 2.8e-09
PAFGACJO_01978 2.9e-13
PAFGACJO_01979 5.6e-73 V Restriction endonuclease
PAFGACJO_01980 6.5e-94 S peptidoglycan catabolic process
PAFGACJO_01981 9.1e-30 S sequence-specific DNA binding transcription factor activity
PAFGACJO_01982 7e-63 3.2.1.26, 3.2.1.65 GH32 M Glycosyl hydrolases family 32
PAFGACJO_01984 1.7e-36 S DNA primase activity
PAFGACJO_01985 1.6e-41 S PD-(D/E)XK nuclease superfamily
PAFGACJO_01986 5.4e-18
PAFGACJO_01987 2.2e-234 dnaE_2 2.7.7.7 L DNA polymerase
PAFGACJO_01989 8.7e-65 S DNA ligase (ATP) activity
PAFGACJO_01990 2.5e-30 S Protein of unknown function (DUF1064)
PAFGACJO_01993 7.8e-100 2.1.1.37 L C-5 cytosine-specific DNA methylase
PAFGACJO_01998 6e-07
PAFGACJO_02001 1.9e-54 2.7.6.1 EF Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
PAFGACJO_02002 2.7e-107 S nicotinate-nucleotide diphosphorylase (carboxylating) activity
PAFGACJO_02005 2.2e-31
PAFGACJO_02006 9.1e-34 pgpA 3.1.3.27 I Phosphatidylglycerophosphatase A
PAFGACJO_02009 3.1e-57 tdk 2.7.1.21 F Thymidine kinase
PAFGACJO_02010 5e-31 lytE M LysM domain protein
PAFGACJO_02011 4e-83 L Integrase
PAFGACJO_02024 1.6e-71 2.7.1.74, 2.7.1.76 F Nucleoside
PAFGACJO_02039 1.8e-85 dck 2.7.1.74 F Deoxynucleoside kinase
PAFGACJO_02040 6.4e-43
PAFGACJO_02047 9.4e-53 pnuC H Nicotinamide mononucleotide transporter
PAFGACJO_02049 1.1e-78 O COG0330 Membrane protease subunits, stomatin prohibitin homologs
PAFGACJO_02052 2e-122 recD 3.1.11.5 L Helix-hairpin-helix containing domain
PAFGACJO_02055 9.4e-97 3.6.4.12 L DnaB-like helicase C terminal domain
PAFGACJO_02057 5.7e-32
PAFGACJO_02058 2.1e-61
PAFGACJO_02059 4.3e-21 L Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PAFGACJO_02060 6.3e-16
PAFGACJO_02062 8.9e-11 2.7.1.24 H dephospho-CoA kinase activity
PAFGACJO_02064 3.3e-56 L Belongs to the 'phage' integrase family
PAFGACJO_02065 1.1e-250 L PFAM transposase, IS4 family protein
PAFGACJO_02066 1.7e-281 gadB 4.1.1.15 E Belongs to the group II decarboxylase family
PAFGACJO_02067 9.8e-283 gadC E amino acid
PAFGACJO_02068 9.7e-07 gspA M lipopolysaccharide 3-alpha-galactosyltransferase activity
PAFGACJO_02069 6.9e-227 ltrA_1 L PFAM RNA-directed DNA polymerase (Reverse transcriptase)
PAFGACJO_02071 6.1e-48 hsdS 3.1.21.3 V Type I restriction modification DNA specificity domain
PAFGACJO_02072 2.3e-75 csd1 3.5.1.28 G domain, Protein

eggNOG-mapper v2 (Database: eggNOG v5.0, Jul. 2018 release)