GCA_000179435.1 - 3 region(s)

Identified primary metabolite regions

AEAW01000043.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	pdu	SCFA-other	133,419	172,016	Propanediol degradation S. enterica	PDU	66%

AEAW01000030.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	TPP_AA_metabolism	Putative	28,851	62,884

AEAW01000016.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	Nitrate_reductase	E-MGC	8,700	35,167	Nitrate reductase E. coli	NIR	40%

No primary metabolite regions were found in these records:: AEAW01000123.1; AEAW01000121.1; AEAW01000116.1; AEAW01000115.1; AEAW01000114.1; AEAW01000113.1; AEAW01000104.1; AEAW01000103.1; AEAW01000101.1; AEAW01000098.1; AEAW01000097.1; AEAW01000091.1; AEAW01000090.1; AEAW01000089.1; AEAW01000085.1; AEAW01000082.1; AEAW01000078.1; AEAW01000077.1; AEAW01000076.1; AEAW01000075.1; AEAW01000074.1; AEAW01000069.1; AEAW01000066.1; AEAW01000059.1; AEAW01000058.1; AEAW01000057.1; AEAW01000054.1; AEAW01000053.1; AEAW01000052.1; AEAW01000050.1; AEAW01000049.1; AEAW01000048.1; AEAW01000046.1; AEAW01000045.1; AEAW01000044.1; AEAW01000042.1; AEAW01000041.1; AEAW01000039.1; AEAW01000038.1; AEAW01000037.1; AEAW01000036.1; AEAW01000034.1; AEAW01000033.1; AEAW01000032.1; AEAW01000031.1; AEAW01000029.1; AEAW01000027.1; AEAW01000026.1; AEAW01000025.1; AEAW01000024.1; AEAW01000023.1; AEAW01000022.1; AEAW01000021.1; AEAW01000019.1; AEAW01000018.1; AEAW01000017.1; AEAW01000015.1; AEAW01000014.1; AEAW01000013.1; AEAW01000007.1; AEAW01000005.1; AEAW01000004.1; AEAW01000003.1; AEAW01000002.1; AEAW01000001.1

Compact view

AEAW01000043.1 - Region 1 - pdu

Download region GenBank file

Location: 133,419 - 172,016 nt. (total: 38,598 nt) Show pHMM detection rules used

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

AEAW01000030.1 - Region 1 - TPP_AA_metabolism

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Location: 28,851 - 62,884 nt. (total: 34,034 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

AEAW01000016.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 8,700 - 35,167 nt. (total: 26,468 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters