Select genomic region:
Overview
3.1
5.1
24.1
34.1
43.1
45.1
71.1

### Identified primary metabolite regions

AFWM01000006.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 3.1 | Putrescine2spermidine | Aliphatic_amine | 1 | 13,668 | Arginine2putrescine R. gnavus | PUTR | 40%

GL995233.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 5.1 | Fumarate2succinate | SCFA | 167,869 | 180,702 | Caffeate respiration A. woodii | CAF | 40%

GL995240.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 24.1 | fatty_acids-unassigned | Putative | 82,269 | 105,801 | Acetate to butyrate C. sporogenes | BUT | 33%

GL995245.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 34.1 | Pyruvate2acetate-formate | SCFA | 48,896 | 71,951 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

GL995247.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 43.1 | fatty_acids-unassigned | Putative | 12,842 | 38,765 | Acetate to butyrate C. sporogenes | BUT | 33%

GL995248.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 45.1 | TPP_AA_metabolism | Putative | 64,218 | 95,470 |

GL995256.1

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 71.1 | Oxidative_glycerol | Other | 3,579 | 36,433 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 3.1 | Putrescine2spermidine | Aliphatic_amine | 1 | 13,668 | Arginine2putrescine R. gnavus | PUTR | 40%
Region 5.1 | Fumarate2succinate | SCFA | 167,869 | 180,702 | Caffeate respiration A. woodii | CAF | 40%
Region 24.1 | fatty_acids-unassigned | Putative | 82,269 | 105,801 | Acetate to butyrate C. sporogenes | BUT | 33%
Region 34.1 | Pyruvate2acetate-formate | SCFA | 48,896 | 71,951 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 43.1 | fatty_acids-unassigned | Putative | 12,842 | 38,765 | Acetate to butyrate C. sporogenes | BUT | 33%
Region 45.1 | TPP_AA_metabolism | Putative | 64,218 | 95,470 |
Region 71.1 | Oxidative_glycerol | Other | 3,579 | 36,433 |

No primary metabolite regions were found in these records:
  AFWM01000001.1
  GL995231.1
  GL995232.1
  GL995234.1
  GL995235.1
  AFWM01000030.1
  AFWM01000033.1
  AFWM01000034.1
  GL995236.1
  AFWM01000039.1
  AFWM01000041.1
  AFWM01000042.1
  GL995237.1
  AFWM01000050.1
  AFWM01000051.1
  AFWM01000052.1
  GL995238.1
  GL995239.1
  AFWM01000067.1
  AFWM01000069.1
  AFWM01000070.1
  AFWM01000077.1
  GL995241.1
  AFWM01000081.1
  AFWM01000083.1
  GL995242.1
  AFWM01000090.1
  AFWM01000091.1
  GL995243.1
  AFWM01000102.1
  GL995246.1
  AFWM01000120.1
  AFWM01000121.1
  AFWM01000122.1
  AFWM01000123.1
  AFWM01000124.1
  AFWM01000128.1
  AFWM01000129.1
  AFWM01000137.1
  AFWM01000141.1
  AFWM01000142.1
  AFWM01000143.1
  AFWM01000144.1
  AFWM01000147.1
  AFWM01000148.1
  AFWM01000149.1
  GL995249.1
  AFWM01000157.1
  GL995250.1
  AFWM01000160.1
  GL995251.1
  AFWM01000164.1
  GL995252.1
  GL995253.1
  AFWM01000191.1
  AFWM01000197.1
  GL995254.1
  AFWM01000201.1
  GL995255.1
  AFWM01000205.1
  AFWM01000206.1
  AFWM01000207.1
  AFWM01000208.1
  AFWM01000210.1
  AFWM01000214.1
  AFWM01000215.1
  GL995257.1
  AFWM01000222.1
  GL995258.1
  AFWM01000225.1
  AFWM01000228.1
  AFWM01000231.1
  AFWM01000232.1

Compact view
AFWM01000006.1 - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,668 nt. (total: 13,668 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
GL995233.1 - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 167,869 - 180,702 nt. (total: 12,834 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
GL995240.1 - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 82,269 - 105,801 nt. (total: 23,533 nt) Show pHMM detection rules used
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
GL995245.1 - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 48,896 - 71,951 nt. (total: 23,056 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
GL995247.1 - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 12,842 - 38,765 nt. (total: 25,924 nt) Show pHMM detection rules used
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
GL995248.1 - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 64,218 - 95,470 nt. (total: 31,253 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

GL995256.1 - Region 1 - Oxidative_glycerol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 3,579 - 36,433 nt. (total: 32,855 nt) Show pHMM detection rules used
Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.