GCA_000223155.1 - 7 region(s)

Identified primary metabolite regions

AFWM01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Putrescine2spermidine	Aliphatic_amine	1	13,668	Arginine2putrescine R. gnavus	PUTR	40%

GL995233.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Fumarate2succinate	SCFA	167,869	180,702	Caffeate respiration A. woodii	CAF	40%

GL995240.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	fatty_acids-unassigned	Putative	82,269	105,801	Acetate to butyrate C. sporogenes	BUT	33%

GL995245.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Pyruvate2acetate-formate	SCFA	48,896	71,951	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

GL995247.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	fatty_acids-unassigned	Putative	12,842	38,765	Acetate to butyrate C. sporogenes	BUT	33%

GL995248.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	TPP_AA_metabolism	Putative	64,218	95,470

GL995256.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	Oxidative_glycerol	Other	3,579	36,433

No primary metabolite regions were found in these records:: AFWM01000001.1; GL995231.1; GL995232.1; GL995234.1; GL995235.1; AFWM01000030.1; AFWM01000033.1; AFWM01000034.1; GL995236.1; AFWM01000039.1; AFWM01000041.1; AFWM01000042.1; GL995237.1; AFWM01000050.1; AFWM01000051.1; AFWM01000052.1; GL995238.1; GL995239.1; AFWM01000067.1; AFWM01000069.1; AFWM01000070.1; AFWM01000077.1; GL995241.1; AFWM01000081.1; AFWM01000083.1; GL995242.1; AFWM01000090.1; AFWM01000091.1; GL995243.1; AFWM01000102.1; GL995246.1; AFWM01000120.1; AFWM01000121.1; AFWM01000122.1; AFWM01000123.1; AFWM01000124.1; AFWM01000128.1; AFWM01000129.1; AFWM01000137.1; AFWM01000141.1; AFWM01000142.1; AFWM01000143.1; AFWM01000144.1; AFWM01000147.1; AFWM01000148.1; AFWM01000149.1; GL995249.1; AFWM01000157.1; GL995250.1; AFWM01000160.1; GL995251.1; AFWM01000164.1; GL995252.1; GL995253.1; AFWM01000191.1; AFWM01000197.1; GL995254.1; AFWM01000201.1; GL995255.1; AFWM01000205.1; AFWM01000206.1; AFWM01000207.1; AFWM01000208.1; AFWM01000210.1; AFWM01000214.1; AFWM01000215.1; GL995257.1; AFWM01000222.1; GL995258.1; AFWM01000225.1; AFWM01000228.1; AFWM01000231.1; AFWM01000232.1

Compact view

AFWM01000006.1 - Region 1 - Putrescine2spermidine

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Location: 1 - 13,668 nt. (total: 13,668 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

GL995233.1 - Region 1 - Fumarate2succinate

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Location: 167,869 - 180,702 nt. (total: 12,834 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

GL995240.1 - Region 1 - fatty_acids-unassigned

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Location: 82,269 - 105,801 nt. (total: 23,533 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

GL995245.1 - Region 1 - Pyruvate2acetate-formate

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Location: 48,896 - 71,951 nt. (total: 23,056 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

GL995247.1 - Region 1 - fatty_acids-unassigned

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Location: 12,842 - 38,765 nt. (total: 25,924 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

GL995248.1 - Region 1 - TPP_AA_metabolism

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Location: 64,218 - 95,470 nt. (total: 31,253 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

GL995256.1 - Region 1 - Oxidative_glycerol

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Location: 3,579 - 36,433 nt. (total: 32,855 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.