GCA_000225385.2 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

AGBV01000006.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	lanthipeptide-class-iv	8,885	31,071
Region 1.2	lanthipeptide-class-ii	36,813	73,990	salivaricin 9	RiPP:Lanthipeptide	72%

AGBV01000004.1

Region	Type	From	To
Region 3.1	T3PKS	824,693	865,859
Region 3.2	RiPP-like	1,047,539	1,055,209
Region 3.3	RiPP-like	1,133,964	1,152,771
Region 3.4	lanthipeptide-class-ii	1,232,486	1,255,422

AGBV01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RiPP-like	258,873	270,969	asukamycin	Polyketide:Type II	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	lanthipeptide-class-iv	8,885	31,071
Region 1.2	lanthipeptide-class-ii	36,813	73,990	salivaricin 9	RiPP:Lanthipeptide	72%
Region 3.1	T3PKS	824,693	865,859
Region 3.2	RiPP-like	1,047,539	1,055,209
Region 3.3	RiPP-like	1,133,964	1,152,771
Region 3.4	lanthipeptide-class-ii	1,232,486	1,255,422
Region 6.1	RiPP-like	258,873	270,969	asukamycin	Polyketide:Type II	3%

Compact view

AGBV01000006.1 - Region 1 - lanthipeptide-class-iv

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Location: 8,885 - 31,071 nt. (total: 22,187 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

AGBV01000006.1 - Region 2 - lanthipeptide-class-ii

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Location: 36,813 - 73,990 nt. (total: 37,178 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_43 - Putative Class II

ctg1_42 leader / core peptide: MKNSKDILNNAIEEVSEKELMEVAGG - KRGDhbGWFADhbIDhbDDCPNDhaVFVCC

Lanthipeptide(s) for ctg1_55 - Putative Class II

ctg1_54 leader / core peptide: MKSTNNQSIAEIAAVNSLQEVSMEELDQIIGA - GNGVVLDhbLDhbHECNLADhbWDhbKKLKCC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg1_42 - Class II

Cleavage pHMM score: 4.40

RODEO score: 0

Monoisotopic mass: 2347.1 Da

Molecular weight: 2348.7 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2366.7 Da N = 1

ctg1_54 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2559.3 Da

Molecular weight: 2561.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2579.1 Da N = 1

AGBV01000004.1 - Region 1 - T3PKS

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Location: 824,693 - 865,859 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

AGBV01000004.1 - Region 2 - RiPP-like

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Location: 1,047,539 - 1,055,209 nt. (total: 7,671 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

AGBV01000004.1 - Region 3 - RiPP-like

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Location: 1,133,964 - 1,152,771 nt. (total: 18,808 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

AGBV01000004.1 - Region 4 - lanthipeptide-class-ii

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Location: 1,232,486 - 1,255,422 nt. (total: 22,937 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg3_1159 - Putative Class II

ctg3_1153 leader / core peptide: MINKEEHEVIDSLEFEVSNQELEGQSGA - GWWDhbAIDhaLDhbADhaGRCGHVFDhbADhaFECDhbDhaNNVRCK
ctg3_1154 leader / core peptide: MSRKSNSPDNGMMESFFG - ILKDhaEMFYRYGKMFKDhaLKQLEQAIVDYINYYNQRINVKLKLDhaDhaPGDhbYHQDhbWEDhaLCQKGDhaL
ctg3_1157 leader / core peptide: MLGNDKVIDSLEFEVAQQELEGSSGA - GDhbRDhbAIRMDhbDhaQGRCGWIFDhbFDhaYECDhaADhaHIRCDha

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

ctg3_1153 - Class II

Cleavage pHMM score: -2.90

RODEO score: 0

Monoisotopic mass: 3344.6 Da

Molecular weight: 3346.7 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3364.8 Da N = 1; 3382.8 Da N = 2; 3400.8 Da N = 3; 3418.8 Da N = 4; 3436.8 Da N = 5

ctg3_1154 - Class II

Cleavage pHMM score: -3.20

RODEO score: 0

Monoisotopic mass: 7033.7 Da

Molecular weight: 7038.1 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 7056.1 Da N = 1; 7074.1 Da N = 2; 7092.2 Da N = 3; 7110.2 Da N = 4; 7128.2 Da N = 5; 7146.2 Da N = 6; 7164.2 Da N = 7

ctg3_1157 - Class II

Cleavage pHMM score: 0.20

RODEO score: 0

Monoisotopic mass: 3449.7 Da

Molecular weight: 3451.9 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3469.9 Da N = 1; 3487.9 Da N = 2; 3506.0 Da N = 3; 3524.0 Da N = 4; 3542.0 Da N = 5; 3560.0 Da N = 6

AGBV01000001.1 - Region 1 - RiPP-like

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Location: 258,873 - 270,969 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters