GCA_000253335.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

FR873481.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	RiPP-like	264,465	276,262	asukamycin	Polyketide:Type II	3%
Region 2	lanthipeptide-class-ii,RaS-RiPP	742,810	776,926	salivaricin 9	RiPP:Lanthipeptide	100%
Region 3	T3PKS	1,579,285	1,620,451
Region 4	RiPP-like	1,783,439	1,791,733
Region 5	RiPP-like	1,875,773	1,894,610

FR873481.1 - Region 1 - RiPP-like

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Location: 264,465 - 276,262 nt. (total: 11,798 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

FR873481.1 - Region 2 - RaS-RiPP,lanthipeptide-class-ii

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Location: 742,810 - 776,926 nt. (total: 34,117 nt) Show pHMM detection rules used

lanthipeptide-class-ii: cds(LANC_like and DUF4135)
RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg1_598 - Putative Class II

ctg1_597 leader / core peptide: MKSTNNQSISEIAAVNSLQEVSMEELDQIIGA - GNGVVLDhbLDhbHECNLADhbWDhbKKLKCC
allorf_0765117_0765245 leader / core peptide: LICVLANVHGM - AFLNGFLANDhaIDhaPRLDhaQDhaCKKQRHKDhbVAFWDha
allorf_0765314_0765427 leader / core peptide: VLVNFAFS - CDNPHFCFDhaLLYDMMKANENYDhaHICVMEV
allorf_0749729_0749866 leader / core peptide: LSFAFLIEICDMARIGM - ADhaCDhaDIVNDhbFVQNFDhaCIRIPDhbLDhaDMLLDhb
allorf_0765101_0765208 leader / core peptide: LHDCDSLGEIELA - KKPFRKAIPCDhbFAKDhbQIKQLYY

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg1_597 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2559.3 Da

Molecular weight: 2561.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2579.1 Da N = 1

allorf_0765117_0765245 - Class II

Cleavage pHMM score: -0.70

RODEO score: 0

Monoisotopic mass: 3412.9 Da

Molecular weight: 3414.9 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 3432.9 Da N = 1; 3451.0 Da N = 2; 3469.0 Da N = 3; 3487.0 Da N = 4; 3505.0 Da N = 5

allorf_0765314_0765427 - Class II

Cleavage pHMM score: -7.30

RODEO score: 0

Monoisotopic mass: 3416.4 Da

Molecular weight: 3418.9 Da

Number of bridges: 2

allorf_0749729_0749866 - Class II

Cleavage pHMM score: -7.30

RODEO score: 0

Monoisotopic mass: 2961.5 Da

Molecular weight: 2963.4 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 2981.4 Da N = 1; 2999.5 Da N = 2; 3017.5 Da N = 3; 3035.5 Da N = 4; 3053.5 Da N = 5

allorf_0765101_0765208 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 2635.5 Da

Molecular weight: 2637.2 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2655.2 Da N = 1

FR873481.1 - Region 3 - T3PKS

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Location: 1,579,285 - 1,620,451 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

FR873481.1 - Region 4 - RiPP-like

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Location: 1,783,439 - 1,791,733 nt. (total: 8,295 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

FR873481.1 - Region 5 - RiPP-like

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Location: 1,875,773 - 1,894,610 nt. (total: 18,838 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.