GCA_000284675.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

AGFN01000375.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	3,704	19,644

AGFN01000372.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	NRPS-like	1	26,063

AGFN01000371.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RaS-RiPP	5,580	22,227

AGFN01000352.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RaS-RiPP	1	16,876

AGFN01000349.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	lanthipeptide-class-i	1	13,026

AGFN01000276.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 101.1	RRE-containing	1	6,823

Region	Type	From	To	Similarity
Region 2.1	RiPP-like	3,704	19,644
Region 5.1	NRPS-like	1	26,063
Region 6.1	RaS-RiPP	5,580	22,227
Region 25.1	RaS-RiPP	1	16,876
Region 28.1	lanthipeptide-class-i	1	13,026
Region 101.1	RRE-containing	1	6,823

No secondary metabolite regions were found in these records:: AGFN01000376.1; AGFN01000374.1; AGFN01000373.1; AGFN01000370.1; AGFN01000369.1; AGFN01000368.1; AGFN01000367.1; AGFN01000366.1; AGFN01000365.1; AGFN01000364.1; AGFN01000363.1; AGFN01000362.1; AGFN01000361.1; AGFN01000360.1; AGFN01000359.1; AGFN01000358.1; AGFN01000357.1; AGFN01000356.1; AGFN01000355.1; AGFN01000354.1; AGFN01000353.1; AGFN01000351.1; AGFN01000350.1; AGFN01000348.1; AGFN01000347.1; AGFN01000346.1; AGFN01000345.1; AGFN01000344.1; AGFN01000343.1; AGFN01000342.1; AGFN01000341.1; AGFN01000340.1; AGFN01000339.1; AGFN01000338.1; AGFN01000337.1; AGFN01000336.1; AGFN01000335.1; AGFN01000334.1; AGFN01000333.1; AGFN01000332.1; AGFN01000331.1; AGFN01000330.1; AGFN01000329.1; AGFN01000328.1; AGFN01000327.1; AGFN01000326.1; AGFN01000325.1; AGFN01000324.1; AGFN01000323.1; AGFN01000322.1; AGFN01000321.1; AGFN01000320.1; AGFN01000319.1; AGFN01000318.1; AGFN01000317.1; AGFN01000316.1; AGFN01000315.1; AGFN01000314.1; AGFN01000313.1; AGFN01000312.1; AGFN01000311.1; AGFN01000310.1; AGFN01000309.1; AGFN01000308.1; AGFN01000307.1; AGFN01000306.1; AGFN01000305.1; AGFN01000304.1; AGFN01000303.1; AGFN01000302.1; AGFN01000301.1; AGFN01000300.1; AGFN01000299.1; AGFN01000298.1; AGFN01000297.1; AGFN01000296.1; AGFN01000295.1; AGFN01000294.1; AGFN01000293.1; AGFN01000292.1; AGFN01000291.1; AGFN01000290.1; AGFN01000289.1; AGFN01000288.1; AGFN01000287.1; AGFN01000286.1; AGFN01000285.1; AGFN01000284.1; AGFN01000283.1; AGFN01000282.1; AGFN01000281.1; AGFN01000280.1; AGFN01000279.1; AGFN01000278.1; AGFN01000277.1; AGFN01000275.1; AGFN01000274.1; AGFN01000273.1; AGFN01000272.1; AGFN01000271.1; AGFN01000270.1; AGFN01000269.1; AGFN01000268.1; AGFN01000267.1; AGFN01000266.1; AGFN01000265.1; AGFN01000264.1; AGFN01000263.1; AGFN01000262.1; AGFN01000261.1; AGFN01000260.1; AGFN01000259.1; AGFN01000258.1; AGFN01000257.1; AGFN01000256.1; AGFN01000255.1; AGFN01000254.1; AGFN01000253.1; AGFN01000252.1; AGFN01000251.1; AGFN01000250.1; AGFN01000249.1; AGFN01000248.1; AGFN01000247.1; AGFN01000246.1; AGFN01000245.1; AGFN01000244.1; AGFN01000243.1; AGFN01000242.1; AGFN01000241.1; AGFN01000240.1; AGFN01000239.1; AGFN01000238.1; AGFN01000237.1; AGFN01000236.1; AGFN01000235.1; AGFN01000234.1; AGFN01000233.1; AGFN01000232.1; AGFN01000231.1; AGFN01000230.1; AGFN01000229.1; AGFN01000228.1; AGFN01000227.1; AGFN01000226.1; AGFN01000225.1; AGFN01000224.1; AGFN01000223.1; AGFN01000222.1; AGFN01000221.1; AGFN01000220.1; AGFN01000219.1; AGFN01000218.1; AGFN01000217.1; AGFN01000216.1; AGFN01000215.1; AGFN01000214.1; AGFN01000213.1; AGFN01000212.1; AGFN01000211.1; AGFN01000210.1; AGFN01000209.1; AGFN01000208.1; AGFN01000207.1; AGFN01000206.1; AGFN01000205.1; AGFN01000204.1; AGFN01000203.1; AGFN01000202.1; AGFN01000201.1; AGFN01000200.1; AGFN01000199.1; AGFN01000198.1; AGFN01000197.1; AGFN01000196.1; AGFN01000195.1; AGFN01000194.1; AGFN01000193.1; AGFN01000192.1; AGFN01000191.1; AGFN01000190.1; AGFN01000189.1; AGFN01000188.1; AGFN01000187.1; AGFN01000186.1; AGFN01000185.1; AGFN01000184.1; AGFN01000183.1; AGFN01000182.1; AGFN01000181.1; AGFN01000180.1; AGFN01000179.1; AGFN01000178.1; AGFN01000177.1; AGFN01000176.1; AGFN01000175.1; AGFN01000174.1; AGFN01000173.1; AGFN01000172.1; AGFN01000171.1; AGFN01000170.1; AGFN01000169.1; AGFN01000168.1; AGFN01000167.1; AGFN01000166.1; AGFN01000165.1; AGFN01000164.1; AGFN01000163.1; AGFN01000162.1; AGFN01000161.1; AGFN01000160.1; AGFN01000159.1; AGFN01000158.1; AGFN01000157.1; AGFN01000156.1; AGFN01000155.1; AGFN01000154.1; AGFN01000152.1; AGFN01000151.1; AGFN01000150.1; AGFN01000149.1; AGFN01000148.1; AGFN01000147.1; AGFN01000146.1; AGFN01000145.1; AGFN01000143.1; AGFN01000142.1; AGFN01000141.1; AGFN01000140.1; AGFN01000139.1; AGFN01000138.1; AGFN01000137.1; AGFN01000136.1; AGFN01000135.1; AGFN01000134.1; AGFN01000133.1; AGFN01000132.1; AGFN01000131.1; AGFN01000130.1; AGFN01000129.1; AGFN01000128.1; AGFN01000127.1; AGFN01000126.1; AGFN01000125.1; AGFN01000124.1; AGFN01000123.1; AGFN01000122.1; AGFN01000121.1; AGFN01000120.1; AGFN01000119.1; AGFN01000118.1; AGFN01000117.1; AGFN01000116.1; AGFN01000115.1; AGFN01000114.1; AGFN01000113.1; AGFN01000112.1; AGFN01000110.1; AGFN01000105.1; AGFN01000104.1; AGFN01000102.1; AGFN01000098.1; AGFN01000097.1; AGFN01000096.1; AGFN01000095.1; AGFN01000093.1; AGFN01000090.1; AGFN01000089.1; AGFN01000088.1; AGFN01000087.1; AGFN01000085.1; AGFN01000082.1; AGFN01000081.1; AGFN01000080.1; AGFN01000079.1; AGFN01000074.1; AGFN01000070.1; AGFN01000069.1; AGFN01000064.1; AGFN01000060.1; AGFN01000059.1; AGFN01000058.1; AGFN01000056.1; AGFN01000054.1; AGFN01000052.1; AGFN01000051.1; AGFN01000050.1; AGFN01000033.1; AGFN01000028.1; AGFN01000026.1; AGFN01000025.1; AGFN01000023.1; AGFN01000017.1; AGFN01000016.1; AGFN01000015.1; AGFN01000009.1

Compact view

AGFN01000375.1 - Region 1 - RiPP-like

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Location: 3,704 - 19,644 nt. (total: 15,941 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

AGFN01000372.1 - Region 1 - NRPS-like

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Location: 1 - 26,063 nt. (total: 26,063 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26063:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_7

Search NORINE for peptide: strict or relaxed

AMP-binding (22..410): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvtavAAVYK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

AGFN01000371.1 - Region 1 - RaS-RiPP

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Location: 5,580 - 22,227 nt. (total: 16,648 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

AGFN01000352.1 - Region 1 - RaS-RiPP

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Location: 1 - 16,876 nt. (total: 16,876 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

AGFN01000349.1 - Region 1 - lanthipeptide-class-i

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Location: 1 - 13,026 nt. (total: 13,026 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

AGFN01000276.1 - Region 1 - RRE-containing

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Location: 1 - 6,823 nt. (total: 6,823 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.