GCA_000466545.1 - 2 region(s)

Identified primary metabolite regions

KE993207.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	15,740	55,291	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

KE993257.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Others_HGD_unassigned	Putative	38,636	63,750

No primary metabolite regions were found in these records:: KE993201.1; KE993202.1; KE993203.1; KE993204.1; KE993205.1; KE993206.1; KE993208.1; KE993209.1; KE993210.1; KE993211.1; KE993212.1; KE993213.1; KE993214.1; KE993215.1; KE993216.1; KE993217.1; KE993218.1; KE993219.1; KE993220.1; KE993221.1; KE993222.1; KE993225.1; KE993226.1; KE993227.1; KE993228.1; KE993229.1; KE993230.1; KE993231.1; KE993232.1; KE993233.1; KE993234.1; KE993235.1; KE993236.1; KE993238.1; KE993239.1; KE993240.1; KE993241.1; KE993242.1; KE993243.1; KE993244.1; KE993245.1; KE993246.1; KE993247.1; KE993248.1; KE993249.1; KE993250.1; KE993251.1; KE993252.1; KE993253.1; KE993254.1; KE993255.1; KE993256.1; KE993258.1; KE993259.1; KE993260.1; KE993261.1; KE993262.1; KE993263.1; KE993264.1; KE993265.1; KE993266.1; KE993267.1; KE993268.1

Compact view

KE993207.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 15,740 - 55,291 nt. (total: 39,552 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

KE993257.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 38,636 - 63,750 nt. (total: 25,115 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.