GCA_000482605.1 - 8 region(s)

Identified primary metabolite regions

AXVW01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_AA_metabolism	Putative	107,267	145,313	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

AXVW01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Putrescine2spermidine	Aliphatic_amine	51,482	73,808	Arginine2putrescine R. gnavus	PUTR	40%

AXVW01000013.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	27,383	53,169	Acetate to butyrate C. sporogenes	BUT	33%

AXVW01000016.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	1	20,478	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

AXVW01000019.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Fumarate2succinate	SCFA	12,790	35,336	Acetate to butyrate C. sporogenes	BUT	33%

KI519464.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	15,989	39,522	Acetate to butyrate C. sporogenes	BUT	33%

AXVW01000039.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_AA_metabolism	Putative	4,984	31,731	Aromatic amino acid reductive branch C. sporogenes	AAA	16%

AXVW01000050.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Oxidative_glycerol	Other	1	27,046

No primary metabolite regions were found in these records:: KI519463.1; AXVW01000004.1; AXVW01000006.1; AXVW01000007.1; AXVW01000008.1; AXVW01000009.1; AXVW01000010.1; AXVW01000011.1; AXVW01000012.1; AXVW01000014.1; AXVW01000015.1; AXVW01000017.1; AXVW01000018.1; AXVW01000020.1; AXVW01000021.1; AXVW01000022.1; AXVW01000023.1; AXVW01000026.1; AXVW01000027.1; KI519465.1; AXVW01000030.1; AXVW01000031.1; AXVW01000032.1; AXVW01000033.1; AXVW01000034.1; AXVW01000035.1; KI519466.1; AXVW01000038.1; AXVW01000040.1; AXVW01000041.1; KI519467.1; AXVW01000044.1; AXVW01000045.1; AXVW01000046.1; AXVW01000047.1; AXVW01000048.1; AXVW01000049.1; AXVW01000051.1; AXVW01000052.1; AXVW01000053.1; AXVW01000054.1; AXVW01000055.1; AXVW01000056.1; AXVW01000057.1; AXVW01000058.1; AXVW01000059.1; AXVW01000060.1; AXVW01000061.1; AXVW01000062.1; AXVW01000063.1; AXVW01000064.1; AXVW01000065.1; AXVW01000066.1; AXVW01000067.1; AXVW01000068.1; KI519468.1; AXVW01000071.1; AXVW01000072.1; AXVW01000073.1; AXVW01000074.1; AXVW01000075.1; AXVW01000076.1; AXVW01000077.1; AXVW01000078.1; AXVW01000079.1; AXVW01000080.1; AXVW01000081.1; AXVW01000082.1; KI519469.1; AXVW01000085.1; AXVW01000086.1; AXVW01000087.1; AXVW01000088.1; AXVW01000089.1; AXVW01000090.1; AXVW01000091.1; AXVW01000092.1; AXVW01000093.1; AXVW01000094.1; AXVW01000095.1; AXVW01000096.1; AXVW01000097.1; AXVW01000098.1; AXVW01000099.1; AXVW01000100.1; AXVW01000101.1; AXVW01000102.1; AXVW01000103.1; AXVW01000104.1; AXVW01000105.1; AXVW01000106.1; AXVW01000107.1; AXVW01000108.1; AXVW01000109.1; AXVW01000110.1; AXVW01000111.1; AXVW01000112.1; AXVW01000113.1; AXVW01000114.1; AXVW01000115.1; AXVW01000116.1; AXVW01000117.1; AXVW01000118.1; AXVW01000119.1; AXVW01000120.1; AXVW01000121.1; AXVW01000122.1; AXVW01000123.1

Compact view

AXVW01000001.1 - Region 1 - TPP_AA_metabolism

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Location: 107,267 - 145,313 nt. (total: 38,047 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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AXVW01000005.1 - Region 1 - Putrescine2spermidine

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Location: 51,482 - 73,808 nt. (total: 22,327 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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AXVW01000013.1 - Region 1 - fatty_acids-unassigned

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Location: 27,383 - 53,169 nt. (total: 25,787 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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AXVW01000016.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 20,478 nt. (total: 20,478 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

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resistance genes

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AXVW01000019.1 - Region 1 - Fumarate2succinate

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Location: 12,790 - 35,336 nt. (total: 22,547 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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KI519464.1 - Region 1 - fatty_acids-unassigned

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Location: 15,989 - 39,522 nt. (total: 23,534 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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AXVW01000039.1 - Region 1 - TPP_AA_metabolism

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Location: 4,984 - 31,731 nt. (total: 26,748 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

AXVW01000050.1 - Region 1 - Oxidative_glycerol

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Location: 1 - 27,046 nt. (total: 27,046 nt) Show pHMM detection rules used

Region on contig edge.

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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