GCA_000687575.1 - 3 region(s)

Identified primary metabolite regions

JHWM01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	proline2aminovalerate	npAA	187,480	212,194	Proline to aminovalerate C. sticklandii	AMI	41%

JHWM01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate,Fumarate2succinate	SCFA	69,813	107,433	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JHWM01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Others_HGD_unassigned	Putative	75,739	100,577

No primary metabolite regions were found in these records:: JHWM01000003.1; JHWM01000004.1; JHWM01000005.1; JHWM01000006.1; JHWM01000007.1; JHWM01000009.1; JHWM01000010.1; JHWM01000011.1; JHWM01000012.1; JHWM01000013.1; JHWM01000014.1; JHWM01000015.1; JHWM01000016.1; JHWM01000017.1; JHWM01000018.1; JHWM01000019.1; JHWM01000020.1; JHWM01000021.1; JHWM01000022.1; JHWM01000023.1; JHWM01000024.1; JHWM01000025.1; JHWM01000026.1; JHWM01000027.1; JHWM01000028.1; JHWM01000029.1; JHWM01000030.1; JHWM01000031.1; JHWM01000032.1; JHWM01000033.1; JHWM01000034.1; JHWM01000035.1; JHWM01000036.1; JHWM01000037.1; JHWM01000038.1; JHWM01000039.1; JHWM01000040.1; JHWM01000041.1; JHWM01000042.1; JHWM01000043.1; JHWM01000044.1; JHWM01000045.1; JHWM01000046.1; JHWM01000047.1; JHWM01000048.1; JHWM01000049.1; JHWM01000050.1

Compact view

JHWM01000001.1 - Region 1 - proline2aminovalerate

Download region GenBank file

Location: 187,480 - 212,194 nt. (total: 24,715 nt) Show pHMM detection rules used

proline2aminovalerate: (Proline_reductase and (Pro_racemase or GRDB) and not ACP_syn_III_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JHWM01000002.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

Download region GenBank file

Location: 69,813 - 107,433 nt. (total: 37,621 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JHWM01000008.1 - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 75,739 - 100,577 nt. (total: 24,839 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.