GCA_000696285.1 - 11 region(s)

Identified primary metabolite regions

JMEG01000001.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	165,439	231,324

JMEG01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	247,363	262,246

JMEG01000005.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Putrescine2spermidine	Aliphatic_amine	1	11,769	Arginine degradation C. sticklandii	ARG	22%

JMEG01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	fatty_acids-unassigned	Putative	9,333	92,751
Region 6.2	acetate2butyrate	SCFA	113,591	136,805	Acetate to butyrate C. sporogenes	BUT	50%

JMEG01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	fatty_acids-unassigned	Putative	1	81,354

JMEG01000010.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Nitrate_reductase	E-MGC	78,826	101,909	Nitrate reductase E. coli	NIR	60%

JMEG01000012.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	77,600	94,290	Acetate to butyrate C. sporogenes	BUT	33%

JMEG01000013.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	hydroxybenzoate2phenol	Aromatic	3,111	25,113	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JMEG01000019.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Fumarate2succinate	SCFA	1	18,393	Acetate to butyrate C. sporogenes	BUT	33%

JMEG01000030.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	histidine2glutamate_hutHGIU_operon	Other	1	17,617	Histidine to glutamate K. pneumoniae	GLU	60%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	165,439	231,324
Region 2.1	TPP_AA_metabolism	Putative	247,363	262,246
Region 5.1	Putrescine2spermidine	Aliphatic_amine	1	11,769	Arginine degradation C. sticklandii	ARG	22%
Region 6.1	fatty_acids-unassigned	Putative	9,333	92,751
Region 6.2	acetate2butyrate	SCFA	113,591	136,805	Acetate to butyrate C. sporogenes	BUT	50%
Region 8.1	fatty_acids-unassigned	Putative	1	81,354
Region 10.1	Nitrate_reductase	E-MGC	78,826	101,909	Nitrate reductase E. coli	NIR	60%
Region 12.1	fatty_acids-unassigned	Putative	77,600	94,290	Acetate to butyrate C. sporogenes	BUT	33%
Region 13.1	hydroxybenzoate2phenol	Aromatic	3,111	25,113	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 19.1	Fumarate2succinate	SCFA	1	18,393	Acetate to butyrate C. sporogenes	BUT	33%
Region 30.1	histidine2glutamate_hutHGIU_operon	Other	1	17,617	Histidine to glutamate K. pneumoniae	GLU	60%

No primary metabolite regions were found in these records:: JMEG01000003.1; JMEG01000004.1; JMEG01000007.1; JMEG01000009.1; JMEG01000011.1; JMEG01000014.1; JMEG01000015.1; JMEG01000016.1; JMEG01000017.1; JMEG01000018.1; JMEG01000020.1; JMEG01000021.1; JMEG01000022.1; JMEG01000023.1; JMEG01000024.1; JMEG01000025.1; JMEG01000026.1; JMEG01000027.1; JMEG01000028.1; JMEG01000029.1; JMEG01000031.1; JMEG01000032.1; JMEG01000033.1; JMEG01000034.1; JMEG01000035.1; JMEG01000036.1; JMEG01000037.1; JMEG01000038.1; JMEG01000039.1; JMEG01000040.1; JMEG01000041.1; JMEG01000042.1; JMEG01000043.1; JMEG01000044.1; JMEG01000045.1; JMEG01000046.1; JMEG01000047.1; JMEG01000048.1; JMEG01000049.1; JMEG01000050.1; JMEG01000051.1; JMEG01000052.1; JMEG01000053.1; JMEG01000054.1; JMEG01000055.1; JMEG01000056.1; JMEG01000057.1; JMEG01000058.1; JMEG01000059.1; JMEG01000060.1; JMEG01000061.1; JMEG01000062.1; JMEG01000063.1; JMEG01000064.1; JMEG01000065.1; JMEG01000066.1; JMEG01000067.1; JMEG01000068.1; JMEG01000069.1; JMEG01000070.1; JMEG01000071.1; JMEG01000072.1; JMEG01000073.1; JMEG01000074.1; JMEG01000075.1; JMEG01000076.1; JMEG01000077.1; JMEG01000078.1; JMEG01000079.1; JMEG01000080.1; JMEG01000081.1; JMEG01000082.1; JMEG01000083.1; JMEG01000084.1; JMEG01000085.1; JMEG01000086.1; JMEG01000087.1; JMEG01000088.1; JMEG01000089.1; JMEG01000090.1; JMEG01000091.1; JMEG01000092.1; JMEG01000093.1; JMEG01000094.1; JMEG01000095.1; JMEG01000096.1; JMEG01000097.1; JMEG01000098.1; JMEG01000099.1; JMEG01000100.1; JMEG01000101.1; JMEG01000102.1; JMEG01000103.1; JMEG01000104.1; JMEG01000105.1; JMEG01000106.1; JMEG01000107.1; JMEG01000108.1; JMEG01000109.1; JMEG01000110.1; JMEG01000111.1; JMEG01000112.1; JMEG01000113.1; JMEG01000114.1; JMEG01000115.1; JMEG01000116.1; JMEG01000117.1; JMEG01000118.1; JMEG01000119.1; JMEG01000120.1; JMEG01000121.1; JMEG01000122.1; JMEG01000123.1; JMEG01000124.1; JMEG01000125.1; JMEG01000126.1; JMEG01000127.1; JMEG01000128.1; JMEG01000129.1; JMEG01000130.1; JMEG01000131.1; JMEG01000132.1; JMEG01000133.1; JMEG01000134.1; JMEG01000135.1; JMEG01000136.1; JMEG01000137.1; JMEG01000138.1; JMEG01000139.1; JMEG01000140.1; JMEG01000141.1; JMEG01000142.1; JMEG01000143.1; JMEG01000144.1; JMEG01000145.1; JMEG01000146.1; JMEG01000147.1; JMEG01000148.1; JMEG01000149.1; JMEG01000150.1; JMEG01000151.1; JMEG01000152.1; JMEG01000153.1; JMEG01000154.1; JMEG01000155.1; JMEG01000156.1; JMEG01000157.1; JMEG01000158.1; JMEG01000159.1; JMEG01000160.1; JMEG01000161.1; JMEG01000162.1; JMEG01000163.1; JMEG01000164.1; JMEG01000165.1; JMEG01000166.1; JMEG01000167.1; JMEG01000168.1; JMEG01000169.1; JMEG01000170.1; JMEG01000171.1; JMEG01000172.1; JMEG01000173.1; JMEG01000174.1; JMEG01000175.1; JMEG01000176.1; JMEG01000177.1; JMEG01000178.1; JMEG01000179.1; JMEG01000180.1; JMEG01000181.1; JMEG01000182.1; JMEG01000183.1; JMEG01000184.1; JMEG01000185.1; JMEG01000186.1

Compact view

JMEG01000001.1 - Region 1 - fatty_acids-unassigned

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Location: 165,439 - 231,324 nt. (total: 65,886 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JMEG01000002.1 - Region 1 - TPP_AA_metabolism

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Location: 247,363 - 262,246 nt. (total: 14,884 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JMEG01000005.1 - Region 1 - Putrescine2spermidine

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Location: 1 - 11,769 nt. (total: 11,769 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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JMEG01000006.1 - Region 1 - fatty_acids-unassigned

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Location: 9,333 - 92,751 nt. (total: 83,419 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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No matches found.

JMEG01000006.1 - Region 2 - acetate2butyrate

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Location: 113,591 - 136,805 nt. (total: 23,215 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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JMEG01000008.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 81,354 nt. (total: 81,354 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JMEG01000010.1 - Region 1 - Nitrate_reductase

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Location: 78,826 - 101,909 nt. (total: 23,084 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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JMEG01000012.1 - Region 1 - fatty_acids-unassigned

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Location: 77,600 - 94,290 nt. (total: 16,691 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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JMEG01000013.1 - Region 1 - hydroxybenzoate2phenol

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Location: 3,111 - 25,113 nt. (total: 22,003 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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JMEG01000019.1 - Region 1 - Fumarate2succinate

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Location: 1 - 18,393 nt. (total: 18,393 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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JMEG01000030.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 17,617 nt. (total: 17,617 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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