GCA_000714445.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JJMT01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	115,117	127,213

JJMT01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	lanthipeptide-class-ii	1	28,357	suicin 65	RiPP	100%

JJMT01000011.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	lanthipeptide-class-i,RiPP-like	16,062	48,954	streptin	RiPP:Lanthipeptide	100%
Region 10.2	lassopeptide	98,084	120,508

JJMT01000014.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	T3PKS	94,641	135,807

JJMT01000019.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RiPP-like	45,839	64,644

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	115,117	127,213
Region 8.1	lanthipeptide-class-ii	1	28,357	suicin 65	RiPP	100%
Region 10.1	lanthipeptide-class-i,RiPP-like	16,062	48,954	streptin	RiPP:Lanthipeptide	100%
Region 10.2	lassopeptide	98,084	120,508
Region 13.1	T3PKS	94,641	135,807
Region 17.1	RiPP-like	45,839	64,644

Compact view

JJMT01000001.1 - Region 1 - RiPP-like

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Location: 115,117 - 127,213 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JJMT01000009.1 - Region 1 - lanthipeptide-class-ii

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Location: 1 - 28,357 nt. (total: 28,357 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg8_13 - Putative Class II

ctg8_8 leader / core peptide: MKNSKDVLNNAIEEVSEKELMEVAGG - KKGPGWIADhbIDhbDDCPNDhaIFVCC
ctg8_14 leader / core peptide: MKNNKIHLEALEALQELKMEEIDNLLGG - AGHGVNDhbIDhaAECRWNDhaLQAIFDhbCC
ctg8_15 leader / core peptide: MKKDAIIESIKEVSLEELDQIIGA - GNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
ctg8_16 leader / core peptide: MKKDVVIESIKEVSLEELDQIIGA - GNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha

Lanthipeptide(s) for ctg8_7 - Putative Class II

ctg8_8 leader / core peptide: MKNSKDVLNNAIEEVSEKELMEVAGG - KKGPGWIADhbIDhbDDCPNDhaIFVCC
ctg8_14 leader / core peptide: MKNNKIHLEALEALQELKMEEIDNLLGG - AGHGVNDhbIDhaAECRWNDhaLQAIFDhbCC
ctg8_15 leader / core peptide: MKKDAIIESIKEVSLEELDQIIGA - GNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
ctg8_16 leader / core peptide: MKKDVVIESIKEVSLEELDQIIGA - GNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg8_8 - Class II

Cleavage pHMM score: 4.40

RODEO score: 0

Monoisotopic mass: 2313.1 Da

Molecular weight: 2314.7 Da

Number of bridges: 3

ctg8_14 - Class II

Cleavage pHMM score: 0.10

RODEO score: 0

Monoisotopic mass: 2508.2 Da

Molecular weight: 2509.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2527.8 Da N = 1

ctg8_15 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2648.2 Da

Molecular weight: 2650.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2668.0 Da N = 1; 2686.0 Da N = 2

ctg8_16 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2648.2 Da

Molecular weight: 2650.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2668.0 Da N = 1; 2686.0 Da N = 2

ctg8_8 - Class II

Cleavage pHMM score: 4.40

RODEO score: 0

Monoisotopic mass: 2313.1 Da

Molecular weight: 2314.7 Da

Number of bridges: 3

ctg8_14 - Class II

Cleavage pHMM score: 0.10

RODEO score: 0

Monoisotopic mass: 2508.2 Da

Molecular weight: 2509.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2527.8 Da N = 1

ctg8_15 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2648.2 Da

Molecular weight: 2650.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2668.0 Da N = 1; 2686.0 Da N = 2

ctg8_16 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2648.2 Da

Molecular weight: 2650.0 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2668.0 Da N = 1; 2686.0 Da N = 2

JJMT01000011.1 - Region 1 - RiPP-like,lanthipeptide-class-i

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Location: 16,062 - 48,954 nt. (total: 32,893 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg10_30 - Putative Class I

ctg10_27 leader / core peptide: MKNTIKDFDLDLKTTKNNSDEPL - VGDhaRYLCDhbPGDhaCWKLVCFDhbDhbDhbVK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg10_27 - Class I

Cleavage pHMM score: 6.80

RODEO score: 22

Monoisotopic mass: 2440.3 Da

Molecular weight: 2441.9 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2459.9 Da N = 1; 2477.9 Da N = 2; 2496.0 Da N = 3

JJMT01000011.1 - Region 2 - lassopeptide

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Location: 98,084 - 120,508 nt. (total: 22,425 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Lasso peptides

Similar known gene clusters

No matches found.

Lasso peptide predictions

Lassopeptide(s) for ctg10_102 - Putative Class II

ctg10_102 leader / core peptide / cleaved tail: MNYTKPVIEKISTFKSGTS - GLVAGRFRDIFGGRALFLIRI

Lassopeptide(s) for ctg10_103 - Putative Class II

ctg10_103 leader / core peptide / cleaved tail: MKYCKPTFEPIATFKKDTK - GLWTGNFRDVFGGRAIVRVKIEF

Legend:

Red: Putative macrolactam
Purple: Putative cleaved off residues

Lasso peptides

Core peptide predictions

ctg10_102 - Class II: Cleavage pHMM score: -8.10; RODEO score: 18; Monoisotopic mass: 2328.4 Da; Molecular weight: 2329.8 Da; Number of bridges: 0
ctg10_103 - Class II: Cleavage pHMM score: -8.80; RODEO score: 16; Monoisotopic mass: 2618.4 Da; Molecular weight: 2620.0 Da; Number of bridges: 0

JJMT01000014.1 - Region 1 - T3PKS

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Location: 94,641 - 135,807 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JJMT01000019.1 - Region 1 - RiPP-like

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Location: 45,839 - 64,644 nt. (total: 18,806 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.