GCA_000722535.2 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JOKX02000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS,T3PKS	297,339	349,320

JOKX02000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	118,457	130,607

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	NRPS,T3PKS	297,339	349,320
Region 12.1	RiPP-like	118,457	130,607

No secondary metabolite regions were found in these records:: JOKX02000001.1; JOKX02000002.1; JOKX02000003.1; JOKX02000005.1; JOKX02000006.1; JOKX02000007.1; JOKX02000008.1; JOKX02000009.1; JOKX02000010.1; JOKX02000011.1

Compact view

JOKX02000004.1 - Region 1 - NRPS,T3PKS

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Location: 297,339 - 349,320 nt. (total: 51,982 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 297338 - 349320:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 297338 - 340377:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 308165 - 349320:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_324

Search NORINE for peptide: strict or relaxed

AMP-binding (441..822): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DyftFGLIiK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

JOKX02000012.1 - Region 1 - RiPP-like

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Location: 118,457 - 130,607 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.