GCA_000756285.1 - 8 region(s)

Identified primary metabolite regions

JPSK01000066.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	Putrescine2spermidine	Aliphatic_amine	1	18,812	Arginine2putrescine R. gnavus	PUTR	40%

JPSK01000068.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	fatty_acids-unassigned	Putative	37,001	59,571	Acetate to butyrate C. sporogenes	BUT	33%

JPSK01000095.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Oxidative_glycerol	Other	12,942	46,009

JPSK01000097.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 86.1	TPP_AA_metabolism	Putative	3,306	34,543

JPSK01000111.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 96.1	Pyruvate2acetate-formate	SCFA	1	19,365	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JPSK01000117.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 101.1	fatty_acids-unassigned	Putative	2,591	28,381	Acetate to butyrate C. sporogenes	BUT	33%

JPSK01000129.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 113.1	Fumarate2succinate	SCFA	1	18,182

JPSK01000132.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 116.1	fatty_acids-unassigned	Putative	87,692	111,635	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JPSK01000001.1; JPSK01000002.1; JPSK01000003.1; JPSK01000004.1; JPSK01000005.1; JPSK01000006.1; JPSK01000007.1; JPSK01000008.1; JPSK01000009.1; JPSK01000010.1; JPSK01000011.1; JPSK01000012.1; JPSK01000013.1; JPSK01000014.1; JPSK01000015.1; JPSK01000016.1; JPSK01000017.1; JPSK01000018.1; JPSK01000019.1; JPSK01000020.1; JPSK01000021.1; JPSK01000022.1; JPSK01000023.1; JPSK01000024.1; JPSK01000025.1; JPSK01000026.1; JPSK01000027.1; JPSK01000030.1; JPSK01000031.1; JPSK01000032.1; JPSK01000033.1; JPSK01000035.1; JPSK01000036.1; JPSK01000037.1; JPSK01000038.1; JPSK01000039.1; JPSK01000041.1; JPSK01000042.1; JPSK01000043.1; JPSK01000044.1; JPSK01000045.1; JPSK01000046.1; JPSK01000047.1; JPSK01000048.1; JPSK01000049.1; JPSK01000050.1; JPSK01000051.1; JPSK01000052.1; JPSK01000054.1; JPSK01000055.1; JPSK01000057.1; JPSK01000058.1; JPSK01000060.1; JPSK01000061.1; JPSK01000062.1; JPSK01000063.1; JPSK01000064.1; JPSK01000065.1; JPSK01000067.1; JPSK01000069.1; JPSK01000071.1; JPSK01000072.1; JPSK01000073.1; JPSK01000074.1; JPSK01000075.1; JPSK01000077.1; JPSK01000078.1; JPSK01000079.1; JPSK01000080.1; JPSK01000081.1; JPSK01000082.1; JPSK01000083.1; JPSK01000084.1; JPSK01000085.1; JPSK01000086.1; JPSK01000087.1; JPSK01000088.1; JPSK01000089.1; JPSK01000092.1; JPSK01000093.1; JPSK01000094.1; JPSK01000096.1; JPSK01000098.1; JPSK01000100.1; JPSK01000101.1; JPSK01000102.1; JPSK01000103.1; JPSK01000104.1; JPSK01000108.1; JPSK01000109.1; JPSK01000110.1; JPSK01000112.1; JPSK01000113.1; JPSK01000115.1; JPSK01000116.1; JPSK01000118.1; JPSK01000119.1; JPSK01000120.1; JPSK01000121.1; JPSK01000122.1; JPSK01000123.1; JPSK01000124.1; JPSK01000125.1; JPSK01000126.1; JPSK01000127.1; JPSK01000128.1; JPSK01000130.1; JPSK01000131.1; JPSK01000133.1; JPSK01000134.1; JPSK01000135.1; JPSK01000136.1; JPSK01000137.1; JPSK01000138.1; JPSK01000139.1; JPSK01000140.1; JPSK01000141.1; JPSK01000142.1; JPSK01000143.1; JPSK01000144.1; JPSK01000146.1; JPSK01000147.1; JPSK01000148.1; JPSK01000152.1; JPSK01000153.1; JPSK01000157.1; JPSK01000159.1; JPSK01000160.1; JPSK01000161.1; JPSK01000165.1; JPSK01000166.1; JPSK01000176.1; JPSK01000180.1; JPSK01000190.1; JPSK01000191.1; JPSK01000199.1; JPSK01000209.1

Compact view

JPSK01000066.1 - Region 1 - Putrescine2spermidine

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Location: 1 - 18,812 nt. (total: 18,812 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JPSK01000068.1 - Region 1 - fatty_acids-unassigned

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Location: 37,001 - 59,571 nt. (total: 22,571 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JPSK01000095.1 - Region 1 - Oxidative_glycerol

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Location: 12,942 - 46,009 nt. (total: 33,068 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JPSK01000097.1 - Region 1 - TPP_AA_metabolism

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Location: 3,306 - 34,543 nt. (total: 31,238 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JPSK01000111.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 19,365 nt. (total: 19,365 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JPSK01000117.1 - Region 1 - fatty_acids-unassigned

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Location: 2,591 - 28,381 nt. (total: 25,791 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JPSK01000129.1 - Region 1 - Fumarate2succinate

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Location: 1 - 18,182 nt. (total: 18,182 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JPSK01000132.1 - Region 1 - fatty_acids-unassigned

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Location: 87,692 - 111,635 nt. (total: 23,944 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters