GCA_000773655.1 - 8 region(s)

Identified primary metabolite regions

JSVI01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	TPP_AA_metabolism	Putative	144,878	182,941	Acetyl-CoA pathway C. beijerinckii	Acetate	13%

JSVI01000030.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Pyruvate2acetate-formate	SCFA	4,830	27,921	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JSVI01000034.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	fatty_acids-unassigned	Putative	1,092	26,878	Acetate to butyrate C. sporogenes	BUT	33%

JSVI01000004.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	Fumarate2succinate	SCFA	118,963	141,554	Acetate to butyrate C. sporogenes	BUT	33%

JSVI01000045.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	TPP_AA_metabolism	Putative	11,738	38,195	Aromatic amino acid reductive branch C. sporogenes	AAA	16%

JSVI01000047.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	fatty_acids-unassigned	Putative	1	17,235	Acetate to butyrate C. sporogenes	BUT	33%

JSVI01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 83.1	Oxidative_glycerol	Other	51,744	86,129

JSVI01000007.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 94.1	Putrescine2spermidine	Aliphatic_amine	33,743	56,069	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: JSVI01000001.1; JSVI01000010.1; JSVI01000096.1; JSVI01000097.1; JSVI01000098.1; JSVI01000099.1; JSVI01000100.1; JSVI01000101.1; JSVI01000102.1; JSVI01000103.1; JSVI01000104.1; JSVI01000105.1; JSVI01000011.1; JSVI01000106.1; JSVI01000107.1; JSVI01000108.1; JSVI01000109.1; JSVI01000110.1; JSVI01000111.1; JSVI01000112.1; JSVI01000113.1; JSVI01000114.1; JSVI01000115.1; JSVI01000012.1; JSVI01000116.1; JSVI01000117.1; JSVI01000118.1; JSVI01000119.1; JSVI01000120.1; JSVI01000121.1; JSVI01000122.1; JSVI01000123.1; JSVI01000125.1; JSVI01000013.1; JSVI01000126.1; JSVI01000127.1; JSVI01000128.1; JSVI01000015.1; JSVI01000017.1; JSVI01000018.1; JSVI01000019.1; JSVI01000002.1; JSVI01000020.1; JSVI01000021.1; JSVI01000022.1; JSVI01000023.1; JSVI01000024.1; JSVI01000025.1; JSVI01000026.1; JSVI01000027.1; JSVI01000028.1; JSVI01000029.1; JSVI01000031.1; JSVI01000032.1; JSVI01000033.1; JSVI01000035.1; JSVI01000036.1; JSVI01000037.1; JSVI01000038.1; JSVI01000039.1; JSVI01000040.1; JSVI01000041.1; JSVI01000042.1; JSVI01000043.1; JSVI01000044.1; JSVI01000046.1; JSVI01000005.1; JSVI01000048.1; JSVI01000049.1; JSVI01000051.1; JSVI01000052.1; JSVI01000053.1; JSVI01000054.1; JSVI01000055.1; JSVI01000056.1; JSVI01000057.1; JSVI01000058.1; JSVI01000059.1; JSVI01000060.1; JSVI01000061.1; JSVI01000062.1; JSVI01000063.1; JSVI01000064.1; JSVI01000065.1; JSVI01000066.1; JSVI01000067.1; JSVI01000068.1; JSVI01000069.1; JSVI01000070.1; JSVI01000071.1; JSVI01000072.1; JSVI01000073.1; JSVI01000074.1; JSVI01000075.1; JSVI01000076.1; JSVI01000008.1; JSVI01000078.1; JSVI01000079.1; JSVI01000080.1; JSVI01000082.1; JSVI01000083.1; JSVI01000084.1; JSVI01000085.1; JSVI01000086.1; JSVI01000087.1; JSVI01000009.1; JSVI01000088.1; JSVI01000089.1; JSVI01000091.1; JSVI01000092.1; JSVI01000095.1

Compact view

JSVI01000003.1 - Region 1 - TPP_AA_metabolism

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Location: 144,878 - 182,941 nt. (total: 38,064 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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JSVI01000030.1 - Region 1 - Pyruvate2acetate-formate

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Location: 4,830 - 27,921 nt. (total: 23,092 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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JSVI01000034.1 - Region 1 - fatty_acids-unassigned

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Location: 1,092 - 26,878 nt. (total: 25,787 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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JSVI01000004.1 - Region 1 - Fumarate2succinate

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Location: 118,963 - 141,554 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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JSVI01000045.1 - Region 1 - TPP_AA_metabolism

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Location: 11,738 - 38,195 nt. (total: 26,458 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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JSVI01000047.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 17,235 nt. (total: 17,235 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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JSVI01000006.1 - Region 1 - Oxidative_glycerol

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Location: 51,744 - 86,129 nt. (total: 34,386 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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No matches found.

JSVI01000007.1 - Region 1 - Putrescine2spermidine

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Location: 33,743 - 56,069 nt. (total: 22,327 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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