GCA_000814725.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JOKA01000024.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	RiPP-like	1	3,299

JOKA01000008.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	T3PKS	1	25,910

JOKA01000040.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 54.1	RiPP-like	1	4,879	lactocin S	RiPP:Lanthipeptide	10%

Region	Type	From	To	Most similar known cluster	Similarity
Region 24.1	RiPP-like	1	3,299
Region 40.1	T3PKS	1	25,910
Region 54.1	RiPP-like	1	4,879	lactocin S	RiPP:Lanthipeptide	10%

No secondary metabolite regions were found in these records:: JOKA01000074.1; JOKA01000032.1; JOKA01000021.1; JOKA01000036.1; JOKA01000057.1; JOKA01000065.1; JOKA01000091.1; JOKA01000025.1; JOKA01000045.1; JOKA01000076.1; JOKA01000059.1; JOKA01000052.1; JOKA01000029.1; JOKA01000039.1; JOKA01000042.1; JOKA01000015.1; JOKA01000072.1; JOKA01000073.1; JOKA01000035.1; JOKA01000046.1; JOKA01000003.1; JOKA01000080.1; JOKA01000009.1; JOKA01000031.1; JOKA01000014.1; JOKA01000098.1; JOKA01000044.1; JOKA01000013.1; JOKA01000077.1; JOKA01000055.1; JOKA01000083.1; JOKA01000066.1; JOKA01000022.1; JOKA01000027.1; JOKA01000070.1; JOKA01000012.1; JOKA01000082.1; JOKA01000030.1; JOKA01000023.1; JOKA01000068.1; JOKA01000086.1; JOKA01000028.1; JOKA01000095.1; JOKA01000051.1; JOKA01000037.1; JOKA01000071.1; JOKA01000090.1; JOKA01000038.1; JOKA01000026.1; JOKA01000062.1; JOKA01000016.1; JOKA01000097.1; JOKA01000092.1; JOKA01000043.1; JOKA01000081.1; JOKA01000047.1; JOKA01000060.1; JOKA01000067.1; JOKA01000001.1; JOKA01000033.1

Compact view

JOKA01000024.1 - Region 1 - RiPP-like

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Location: 1 - 3,299 nt. (total: 3,299 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

JOKA01000008.1 - Region 1 - T3PKS

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Location: 1 - 25,910 nt. (total: 25,910 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

JOKA01000040.1 - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 1 - 4,879 nt. (total: 4,879 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters