Select genomic region:
Overview
9.1
10.1
34.1

### Identified secondary metabolite regions using strictness 'relaxed'

CCWN01000009.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | RiPP-like | 5,002 | 15,373 |

CCWN01000010.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 10.1 | lanthipeptide-class-iii | 6,423 | 29,080 |

CCWN01000034.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 34.1 | RiPP-like | 47,464 | 57,859 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 9.1 | RiPP-like | 5,002 | 15,373 |
Region 10.1 | lanthipeptide-class-iii | 6,423 | 29,080 |
Region 34.1 | RiPP-like | 47,464 | 57,859 |

No secondary metabolite regions were found in these records:
  CCWN01000001.1
  CCWN01000002.1
  CCWN01000003.1
  CCWN01000004.1
  CCWN01000005.1
  CCWN01000006.1
  CCWN01000007.1
  CCWN01000008.1
  CCWN01000011.1
  CCWN01000012.1
  CCWN01000013.1
  CCWN01000014.1
  CCWN01000015.1
  CCWN01000016.1
  CCWN01000017.1
  CCWN01000018.1
  CCWN01000019.1
  CCWN01000020.1
  CCWN01000021.1
  CCWN01000022.1
  CCWN01000023.1
  CCWN01000024.1
  CCWN01000025.1
  CCWN01000026.1
  CCWN01000027.1
  CCWN01000028.1
  CCWN01000029.1
  CCWN01000030.1
  CCWN01000031.1
  CCWN01000032.1
  CCWN01000033.1
  CCWN01000035.1
  CCWN01000036.1
  CCWN01000037.1
  CCWN01000038.1
  CCWN01000039.1
  CCWN01000040.1
  CCWN01000041.1
  CCWN01000042.1
  CCWN01000043.1
  CCWN01000044.1
  CCWN01000045.1
  CCWN01000046.1
  CCWN01000047.1
  CCWN01000048.1
  CCWN01000049.1
  CCWN01000050.1
  CCWN01000051.1
  CCWN01000052.1
  CCWN01000053.1
  CCWN01000054.1
  CCWN01000055.1
  CCWN01000056.1
  CCWN01000057.1

Compact view
CCWN01000009.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 5,002 - 15,373 nt. (total: 10,372 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

CCWN01000010.1 - Region 1 - lanthipeptide-class-iii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 6,423 - 29,080 nt. (total: 22,658 nt) Show pHMM detection rules used
lanthipeptide-class-iii: (micKC and not PKS_KS)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptides - No core peptides found.
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
CCWN01000034.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 47,464 - 57,859 nt. (total: 10,396 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.