GCA_000830605.1 - 7 region(s)

Identified primary metabolite regions

JXHL01000020.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	146,837	192,881	Nitrate reductase E. coli	NIR	60%

JXHL01000021.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Fumarate2succinate	SCFA	115,748	138,272	Acetate to butyrate C. sporogenes	BUT	33%

JXHL01000032.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	fatty_acids-unassigned	Putative	15,194	38,430	Acetate to butyrate C. sporogenes	BUT	50%

JXHL01000035.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	histidine2glutamate_hutHGIU_operon	Other	30,421	55,889	Histidine to glutamate K. pneumoniae	GLU	60%

JXHL01000036.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	fatty_acids-unassigned	Putative	2,869	28,235	Acetate to butyrate C. sporogenes	BUT	33%

JXHL01000037.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	TPP_AA_metabolism	Putative	1	21,181

JXHL01000054.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	hydroxybenzoate2phenol	Aromatic	31,230	53,268	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

No primary metabolite regions were found in these records:: JXHL01000001.1; JXHL01000009.1; JXHL01000060.1; JXHL01000010.1; JXHL01000061.1; JXHL01000063.1; JXHL01000011.1; JXHL01000012.1; JXHL01000064.1; JXHL01000065.1; JXHL01000066.1; JXHL01000013.1; JXHL01000067.1; JXHL01000014.1; JXHL01000015.1; JXHL01000016.1; JXHL01000017.1; JXHL01000018.1; JXHL01000002.1; JXHL01000019.1; JXHL01000022.1; JXHL01000023.1; JXHL01000024.1; JXHL01000025.1; JXHL01000026.1; JXHL01000027.1; JXHL01000028.1; JXHL01000003.1; JXHL01000029.1; JXHL01000030.1; JXHL01000031.1; JXHL01000033.1; JXHL01000034.1; JXHL01000038.1; JXHL01000004.1; JXHL01000039.1; JXHL01000040.1; JXHL01000041.1; JXHL01000042.1; JXHL01000043.1; JXHL01000005.1; JXHL01000045.1; JXHL01000047.1; JXHL01000006.1; JXHL01000048.1; JXHL01000049.1; JXHL01000050.1; JXHL01000007.1; JXHL01000051.1; JXHL01000053.1; JXHL01000055.1; JXHL01000056.1; JXHL01000057.1; JXHL01000058.1; JXHL01000008.1; JXHL01000059.1

Compact view

JXHL01000020.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 146,837 - 192,881 nt. (total: 46,045 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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additional biosynthetic genes

transport-related genes

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JXHL01000021.1 - Region 1 - Fumarate2succinate

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Location: 115,748 - 138,272 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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JXHL01000032.1 - Region 1 - fatty_acids-unassigned

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Location: 15,194 - 38,430 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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JXHL01000035.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 30,421 - 55,889 nt. (total: 25,469 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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JXHL01000036.1 - Region 1 - fatty_acids-unassigned

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Location: 2,869 - 28,235 nt. (total: 25,367 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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JXHL01000037.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 21,181 nt. (total: 21,181 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

JXHL01000054.1 - Region 1 - hydroxybenzoate2phenol

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Location: 31,230 - 53,268 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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