GCA_000830675.1 - 13 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

JXHM01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS	72,526	119,061	bacillibactin	NRP	100%

JXHM01000018.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	sactipeptide,ranthipeptide,NRPS,T1PKS,NRPS-like	65,153	108,588	sporulation killing factor	RiPP:Head-to-tailcyclized peptide	100%

JXHM01000002.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	epipeptide	1	14,785	thailanstatin A	NRP + Polyketide	10%

JXHM01000125.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	1	26,411	surfactin	NRP:Lipopeptide	43%

JXHM01000024.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	T3PKS	6,219	47,334

JXHM01000029.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 61.1	NRPS	9,224	39,338	locillomycin	NRP + Polyketide	21%

JXHM01000035.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	CDPS	208,781	229,527

JXHM01000047.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 82.1	NRPS	1	27,637	surfactin	NRP:Lipopeptide	39%

JXHM01000049.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 84.1	sactipeptide	15,442	37,053	subtilosin A	RiPP:Thiopeptide	100%
Region 84.2	other	40,105	81,523	bacilysin	Other	100%

JXHM01000061.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 98.1	terpene	23,328	43,306

JXHM01000072.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 110.1	NRPS	1	10,220	surfactin	NRP:Lipopeptide	8%

JXHM01000074.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 111.1	NRPS-like,betalactone,NRPS	15,703	52,060	fengycin	NRP	93%

No secondary metabolite regions were found in these records:: JXHM01000001.1; JXHM01000010.1; JXHM01000082.1; JXHM01000083.1; JXHM01000011.1; JXHM01000085.1; JXHM01000086.1; JXHM01000087.1; JXHM01000088.1; JXHM01000089.1; JXHM01000090.1; JXHM01000091.1; JXHM01000092.1; JXHM01000093.1; JXHM01000013.1; JXHM01000094.1; JXHM01000095.1; JXHM01000097.1; JXHM01000098.1; JXHM01000099.1; JXHM01000014.1; JXHM01000100.1; JXHM01000101.1; JXHM01000015.1; JXHM01000105.1; JXHM01000106.1; JXHM01000016.1; JXHM01000107.1; JXHM01000108.1; JXHM01000109.1; JXHM01000111.1; JXHM01000017.1; JXHM01000114.1; JXHM01000115.1; JXHM01000116.1; JXHM01000019.1; JXHM01000118.1; JXHM01000120.1; JXHM01000121.1; JXHM01000020.1; JXHM01000122.1; JXHM01000021.1; JXHM01000123.1; JXHM01000022.1; JXHM01000124.1; JXHM01000126.1; JXHM01000023.1; JXHM01000128.1; JXHM01000025.1; JXHM01000129.1; JXHM01000026.1; JXHM01000130.1; JXHM01000027.1; JXHM01000131.1; JXHM01000028.1; JXHM01000133.1; JXHM01000003.1; JXHM01000030.1; JXHM01000031.1; JXHM01000032.1; JXHM01000033.1; JXHM01000034.1; JXHM01000036.1; JXHM01000037.1; JXHM01000038.1; JXHM01000039.1; JXHM01000004.1; JXHM01000040.1; JXHM01000041.1; JXHM01000042.1; JXHM01000043.1; JXHM01000044.1; JXHM01000045.1; JXHM01000046.1; JXHM01000048.1; JXHM01000005.1; JXHM01000050.1; JXHM01000051.1; JXHM01000052.1; JXHM01000053.1; JXHM01000054.1; JXHM01000055.1; JXHM01000056.1; JXHM01000057.1; JXHM01000058.1; JXHM01000006.1; JXHM01000059.1; JXHM01000060.1; JXHM01000062.1; JXHM01000063.1; JXHM01000064.1; JXHM01000065.1; JXHM01000007.1; JXHM01000066.1; JXHM01000067.1; JXHM01000068.1; JXHM01000069.1; JXHM01000008.1; JXHM01000071.1; JXHM01000009.1; JXHM01000075.1; JXHM01000076.1; JXHM01000078.1; JXHM01000079.1; JXHM01000080.1; JXHM01000081.1

Compact view

JXHM01000012.1 - Region 1 - NRPS

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Location: 72,526 - 119,061 nt. (total: 46,536 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 72525 - 119061:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg10_95

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg10_97

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

JXHM01000018.1 - Region 1 - NRPS,NRPS-like,T1PKS,ranthipeptide,sactipeptide

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Location: 65,153 - 108,588 nt. (total: 43,436 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))
NRPS: cds(Condensation and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Sactipeptides

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

Sactipeptide predictions

Sactipeptides - No core peptides found.

NRPS/PKS products

NRPS/PKS monomers

Sactipeptides

Predicted core structure(s)

For candidate cluster 1, location 65152 - 108588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 78534 - 108588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 83199 - 108588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 5, location 86367 - 108588:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (mal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg35_104

Search NORINE for peptide: strict or relaxed

AMP-binding (483..887): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVqnIGdItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

ctg35_106

PKS_AT (533..827): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 164.4
inactive: 108.1
Methoxymalonyl-CoA: 55.8
Methylmalonyl-CoA: 44.9
Propionyl-CoA: 36.8
fatty_acid: 24.4
Benzoyl-CoA: 19.2
Acetyl-CoA: 14.8
Isobutyryl-CoA: 14.7
CHC-CoA: 14.5
2-Methylbutyryl-CoA: 11.1
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg35_107

Search NORINE for peptide: strict or relaxed

AMP-binding (94..506): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVrHFaLlaK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

Core peptide predictions

No core peptides found.

JXHM01000002.1 - Region 1 - epipeptide

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Location: 1 - 14,785 nt. (total: 14,785 nt) Show pHMM detection rules used

Region on contig edge.

epipeptide: (TIGR04078 and yydH)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

JXHM01000125.1 - Region 1 - NRPS

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Location: 1 - 26,411 nt. (total: 26,411 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26411:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_2

Search NORINE for peptide: strict or relaxed

AMP-binding (469..867): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

JXHM01000024.1 - Region 1 - T3PKS

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Location: 6,219 - 47,334 nt. (total: 41,116 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

JXHM01000029.1 - Region 1 - NRPS

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Location: 9,224 - 39,338 nt. (total: 30,115 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 9223 - 39338:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg61_27

Search NORINE for peptide: strict or relaxed

AMP-binding (28..429): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlWyFiLVhK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

AMP-binding (1072..1464): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfLvGAtiK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

ctg61_28

Search NORINE for peptide: strict or relaxed

AMP-binding (273..672): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVsnFaLIyK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

JXHM01000035.1 - Region 1 - CDPS

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Location: 208,781 - 229,527 nt. (total: 20,747 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

JXHM01000047.1 - Region 1 - NRPS

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Location: 1 - 27,637 nt. (total: 27,637 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 27637:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg82_1

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

JXHM01000049.1 - Region 1 - sactipeptide

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Location: 15,442 - 37,053 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg84_21 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg84_21: Putative sactipeptide; RODEO score: 32.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

JXHM01000049.1 - Region 2 - other

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Location: 40,105 - 81,523 nt. (total: 41,419 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

JXHM01000061.1 - Region 1 - terpene

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Location: 23,328 - 43,306 nt. (total: 19,979 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

JXHM01000072.1 - Region 1 - NRPS

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Location: 1 - 10,220 nt. (total: 10,220 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10220:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg110_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..863): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1500..1903): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

JXHM01000074.1 - Region 1 - NRPS,NRPS-like,betalactone

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Location: 15,703 - 52,060 nt. (total: 36,358 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
betalactone: (HMGL-like and AMP-binding)
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15702 - 52060:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 15702 - 51927:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 20575 - 52060:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg111_34

Search NORINE for peptide: strict or relaxed

AMP-binding (13..445): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gclhIAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 40% (weak)

ctg111_41

Search NORINE for peptide: strict or relaxed

AMP-binding (1..293): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg111_44

Search NORINE for peptide: strict or relaxed

AMP-binding (465..866): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1504..1898): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)