GCA_000952875.1 - 9 region(s)

Identified primary metabolite regions

JYOG01000100.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Nitrate_reductase	E-MGC	1	20,464	Nitrate reductase E. coli	NIR	60%

JYOG01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Putrescine2spermidine	Aliphatic_amine	482	21,312	Arginine degradation C. sticklandii	ARG	22%

JYOG01000021.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	fatty_acids-unassigned	Putative	13,497	103,306

JYOG01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	histidine2glutamate_hutHGIU_operon	Other	87,980	113,392	Histidine to glutamate K. pneumoniae	GLU	60%

JYOG01000042.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	TPP_AA_metabolism	Putative	38,255	61,445
Region 49.2	Fumarate2succinate	SCFA	67,331	89,855	Acetate to butyrate C. sporogenes	BUT	33%

JYOG01000049.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	hydroxybenzoate2phenol	Aromatic	23,343	45,345	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JYOG01000061.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 70.1	fatty_acids-unassigned	Putative	48,813	72,050	Acetate to butyrate C. sporogenes	BUT	50%

JYOG01000069.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 78.1	fatty_acids-unassigned	Putative	19,763	45,116	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: JYOG01000001.1; JYOG01000010.1; JYOG01000103.1; JYOG01000011.1; JYOG01000113.1; JYOG01000012.1; JYOG01000123.1; JYOG01000127.1; JYOG01000013.1; JYOG01000014.1; JYOG01000015.1; JYOG01000016.1; JYOG01000161.1; JYOG01000165.1; JYOG01000166.1; JYOG01000172.1; JYOG01000179.1; JYOG01000018.1; JYOG01000019.1; JYOG01000195.1; JYOG01000020.1; JYOG01000202.1; JYOG01000208.1; JYOG01000022.1; JYOG01000222.1; JYOG01000225.1; JYOG01000023.1; JYOG01000024.1; JYOG01000025.1; JYOG01000026.1; JYOG01000027.1; JYOG01000029.1; JYOG01000031.1; JYOG01000032.1; JYOG01000033.1; JYOG01000034.1; JYOG01000035.1; JYOG01000036.1; JYOG01000037.1; JYOG01000038.1; JYOG01000039.1; JYOG01000004.1; JYOG01000040.1; JYOG01000041.1; JYOG01000043.1; JYOG01000044.1; JYOG01000045.1; JYOG01000046.1; JYOG01000047.1; JYOG01000048.1; JYOG01000005.1; JYOG01000050.1; JYOG01000051.1; JYOG01000052.1; JYOG01000053.1; JYOG01000054.1; JYOG01000055.1; JYOG01000056.1; JYOG01000057.1; JYOG01000058.1; JYOG01000059.1; JYOG01000006.1; JYOG01000060.1; JYOG01000062.1; JYOG01000063.1; JYOG01000064.1; JYOG01000065.1; JYOG01000066.1; JYOG01000067.1; JYOG01000068.1; JYOG01000007.1; JYOG01000070.1; JYOG01000071.1; JYOG01000072.1; JYOG01000073.1; JYOG01000074.1; JYOG01000075.1; JYOG01000076.1; JYOG01000077.1; JYOG01000078.1; JYOG01000079.1; JYOG01000008.1; JYOG01000080.1; JYOG01000083.1; JYOG01000084.1; JYOG01000085.1; JYOG01000086.1; JYOG01000087.1; JYOG01000088.1; JYOG01000089.1; JYOG01000009.1; JYOG01000092.1; JYOG01000093.1

Compact view

JYOG01000100.1 - Region 1 - Nitrate_reductase

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Location: 1 - 20,464 nt. (total: 20,464 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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transport-related genes

regulatory genes

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JYOG01000002.1 - Region 1 - Putrescine2spermidine

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Location: 482 - 21,312 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

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regulatory genes

resistance genes

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JYOG01000021.1 - Region 1 - fatty_acids-unassigned

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Location: 13,497 - 103,306 nt. (total: 89,810 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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resistance genes

encapsulation genes

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KnownClusterBlast

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No matches found.

JYOG01000003.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 87,980 - 113,392 nt. (total: 25,413 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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JYOG01000042.1 - Region 1 - TPP_AA_metabolism

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Location: 38,255 - 61,445 nt. (total: 23,191 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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KnownClusterBlast

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No matches found.

JYOG01000042.1 - Region 2 - Fumarate2succinate

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Location: 67,331 - 89,855 nt. (total: 22,525 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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JYOG01000049.1 - Region 1 - hydroxybenzoate2phenol

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Location: 23,343 - 45,345 nt. (total: 22,003 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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JYOG01000061.1 - Region 1 - fatty_acids-unassigned

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Location: 48,813 - 72,050 nt. (total: 23,238 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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JYOG01000069.1 - Region 1 - fatty_acids-unassigned

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Location: 19,763 - 45,116 nt. (total: 25,354 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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