GCA_001062885.1 - 3 region(s)

Identified primary metabolite regions

JVQV01000008.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	gallic_acid_met	Aromatic	9,569	27,795	Gallic acid degradation B. sp. KLE	GALL	100%

JVQV01000017.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Pyruvate2acetate-formate	SCFA	6,591	29,841	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JVQV01000024.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_fatty_acids	Putative	1	22,098

No primary metabolite regions were found in these records:: JVQV01000001.1; JVQV01000002.1; JVQV01000003.1; JVQV01000005.1; JVQV01000009.1; JVQV01000010.1; JVQV01000011.1; JVQV01000012.1; JVQV01000013.1; JVQV01000014.1; JVQV01000015.1; JVQV01000016.1; JVQV01000018.1; JVQV01000019.1; JVQV01000020.1; JVQV01000022.1; JVQV01000023.1; JVQV01000025.1; JVQV01000026.1; JVQV01000027.1; JVQV01000028.1; JVQV01000029.1; JVQV01000030.1; JVQV01000031.1; JVQV01000033.1; JVQV01000034.1; JVQV01000035.1; JVQV01000036.1; JVQV01000037.1; JVQV01000038.1; JVQV01000039.1; JVQV01000040.1; JVQV01000041.1; JVQV01000042.1; JVQV01000043.1; JVQV01000044.1; JVQV01000045.1; JVQV01000046.1; JVQV01000047.1; JVQV01000048.1; JVQV01000049.1; JVQV01000050.1; JVQV01000051.1; JVQV01000052.1; JVQV01000053.1; JVQV01000054.1; JVQV01000055.1; JVQV01000056.1; JVQV01000057.1; JVQV01000058.1; JVQV01000059.1; JVQV01000060.1; JVQV01000061.1; JVQV01000062.1; JVQV01000063.1; JVQV01000064.1; JVQV01000065.1; JVQV01000066.1; JVQV01000067.1; JVQV01000068.1; JVQV01000069.1; JVQV01000070.1; JVQV01000071.1; JVQV01000072.1; JVQV01000073.1; JVQV01000074.1; JVQV01000075.1; JVQV01000076.1; JVQV01000077.1; JVQV01000078.1; JVQV01000079.1; JVQV01000080.1; JVQV01000081.1; JVQV01000082.1; JVQV01000083.1; JVQV01000084.1; JVQV01000085.1; JVQV01000086.1; JVQV01000087.1; JVQV01000088.1; JVQV01000089.1; JVQV01000090.1; JVQV01000091.1; JVQV01000092.1; JVQV01000093.1; JVQV01000094.1; JVQV01000095.1; JVQV01000096.1

Compact view

JVQV01000008.1 - Region 1 - gallic_acid_met

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Location: 9,569 - 27,795 nt. (total: 18,227 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JVQV01000017.1 - Region 1 - Pyruvate2acetate-formate

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Location: 6,591 - 29,841 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JVQV01000024.1 - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 1 - 22,098 nt. (total: 22,098 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.