GCA_001063485.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JVEX01000587.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	thiopeptide	1,442	18,391	lactocillin	RiPP:Thiopeptide	100%

JVEX01000722.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	1	7,834	gassericin T	RiPP	100%

JVEX01000545.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 557.1	RiPP-like	1	1,149	gassericin-S	RiPP	100%

Compact view

JVEX01000587.1 - Region 1 - thiopeptide

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Location: 1,442 - 18,391 nt. (total: 16,950 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Thiopeptides

KnownClusterBlast

Thiopeptide predictions

Thiopeptide(s)

ctg4_19 leader / core peptide, putative Type III: MKDLFDIDEKSLENLDLGDFKILDSEDLSEKDEKSILGA - DhaCDhbDhbCDhbCCCDhaCCA

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Grey: Putative cleaved off residues
Type I: Featuring genes encoding indolic acid side ring (series e)
Type II: Featuring the gene coding for quinaldic acid moiety formation (series a, b, and c)
Type III: No genes for synthesizing L-Trp derivatives (series d)

Similar known gene clusters

Thiopeptides

Core peptide predictions

ctg4_19

Putative Type III

Cleavage pHMM score: 7.10

RODEO score: 26

Monoisotopic mass: 1216.3 Da

Molecular weight: 1217.5 Da

Predicted peptide features:
Central ring: pyridine trisubstituted

Macrocycle: 26-member

Alternative weights: (assuming N unmodified Ser/Thr residues); 1235.5 Da N = 1; 1253.5 Da N = 2; 1271.5 Da N = 3; 1289.6 Da N = 4; 1307.6 Da N = 5

JVEX01000722.1 - Region 1 - RiPP-like

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Location: 1 - 7,834 nt. (total: 7,834 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

JVEX01000545.1 - Region 1 - RiPP-like

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Location: 1 - 1,149 nt. (total: 1,149 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters