GCA_001063505.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JVEV01000006.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RiPP-like	16,337	29,836	gassericin T	RiPP	100%

JVEV01000042.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	thiopeptide	1	19,767	lactocillin	RiPP:Thiopeptide	100%

No secondary metabolite regions were found in these records:: JVEV01000003.1; JVEV01000004.1; JVEV01000005.1; JVEV01000007.1; JVEV01000008.1; JVEV01000009.1; JVEV01000010.1; JVEV01000011.1; JVEV01000013.1; JVEV01000014.1; JVEV01000015.1; JVEV01000016.1; JVEV01000017.1; JVEV01000018.1; JVEV01000019.1; JVEV01000020.1; JVEV01000021.1; JVEV01000022.1; JVEV01000023.1; JVEV01000024.1; JVEV01000025.1; JVEV01000026.1; JVEV01000027.1; JVEV01000028.1; JVEV01000029.1; JVEV01000030.1; JVEV01000031.1; JVEV01000032.1; JVEV01000033.1; JVEV01000034.1; JVEV01000035.1; JVEV01000036.1; JVEV01000037.1; JVEV01000038.1; JVEV01000039.1; JVEV01000040.1; JVEV01000041.1; JVEV01000043.1; JVEV01000044.1; JVEV01000045.1; JVEV01000046.1; JVEV01000047.1; JVEV01000001.1; JVEV01000002.1

Compact view

JVEV01000006.1 - Region 1 - RiPP-like

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Location: 16,337 - 29,836 nt. (total: 13,500 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

JVEV01000042.1 - Region 1 - thiopeptide

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Location: 1 - 19,767 nt. (total: 19,767 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Thiopeptides

KnownClusterBlast

Thiopeptide predictions

Thiopeptide(s)

ctg39_6 leader / core peptide, putative Type III: MKDLFDIDEKSLENLDLGDFKILDSEDLSEKDEKSILGA - DhaCDhbDhbCDhbCCCDhaCCA

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Grey: Putative cleaved off residues
Type I: Featuring genes encoding indolic acid side ring (series e)
Type II: Featuring the gene coding for quinaldic acid moiety formation (series a, b, and c)
Type III: No genes for synthesizing L-Trp derivatives (series d)

Similar known gene clusters

Thiopeptides

Core peptide predictions

ctg39_6

Putative Type III

Cleavage pHMM score: 7.10

RODEO score: 26

Monoisotopic mass: 1216.3 Da

Molecular weight: 1217.5 Da

Predicted peptide features:
Central ring: pyridine trisubstituted

Macrocycle: 26-member

Alternative weights: (assuming N unmodified Ser/Thr residues); 1235.5 Da N = 1; 1253.5 Da N = 2; 1271.5 Da N = 3; 1289.6 Da N = 4; 1307.6 Da N = 5