GCA_001068195.1 - 3 region(s)

Identified primary metabolite regions

JUMP01000145.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	Pyruvate2acetate-formate	SCFA	7,194	28,679	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JUMP01000183.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 122.1	gallic_acid_met	Aromatic	9,609	22,192	Gallic acid degradation B. sp. KLE	GALL	100%

JUMP01000198.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 138.1	TPP_fatty_acids	Putative	1	9,472

No primary metabolite regions were found in these records:: JUMP01000033.1; JUMP01000035.1; JUMP01000036.1; JUMP01000037.1; JUMP01000040.1; JUMP01000042.1; JUMP01000044.1; JUMP01000045.1; JUMP01000046.1; JUMP01000047.1; JUMP01000048.1; JUMP01000007.1; JUMP01000050.1; JUMP01000051.1; JUMP01000052.1; JUMP01000054.1; JUMP01000057.1; JUMP01000058.1; JUMP01000059.1; JUMP01000060.1; JUMP01000061.1; JUMP01000062.1; JUMP01000063.1; JUMP01000064.1; JUMP01000008.1; JUMP01000065.1; JUMP01000066.1; JUMP01000068.1; JUMP01000069.1; JUMP01000002.1; JUMP01000071.1; JUMP01000072.1; JUMP01000073.1; JUMP01000074.1; JUMP01000075.1; JUMP01000076.1; JUMP01000009.1; JUMP01000077.1; JUMP01000079.1; JUMP01000080.1; JUMP01000081.1; JUMP01000082.1; JUMP01000083.1; JUMP01000084.1; JUMP01000086.1; JUMP01000087.1; JUMP01000088.1; JUMP01000089.1; JUMP01000090.1; JUMP01000091.1; JUMP01000092.1; JUMP01000093.1; JUMP01000010.1; JUMP01000096.1; JUMP01000097.1; JUMP01000098.1; JUMP01000100.1; JUMP01000101.1; JUMP01000104.1; JUMP01000105.1; JUMP01000107.1; JUMP01000108.1; JUMP01000109.1; JUMP01000110.1; JUMP01000111.1; JUMP01000112.1; JUMP01000114.1; JUMP01000116.1; JUMP01000003.1; JUMP01000118.1; JUMP01000119.1; JUMP01000120.1; JUMP01000121.1; JUMP01000122.1; JUMP01000123.1; JUMP01000124.1; JUMP01000125.1; JUMP01000129.1; JUMP01000131.1; JUMP01000132.1; JUMP01000133.1; JUMP01000134.1; JUMP01000136.1; JUMP01000012.1; JUMP01000137.1; JUMP01000139.1; JUMP01000013.1; JUMP01000141.1; JUMP01000142.1; JUMP01000014.1; JUMP01000146.1; JUMP01000148.1; JUMP01000149.1; JUMP01000150.1; JUMP01000151.1; JUMP01000152.1; JUMP01000153.1; JUMP01000154.1; JUMP01000155.1; JUMP01000156.1; JUMP01000160.1; JUMP01000161.1; JUMP01000162.1; JUMP01000163.1; JUMP01000165.1; JUMP01000166.1; JUMP01000167.1; JUMP01000168.1; JUMP01000169.1; JUMP01000170.1; JUMP01000171.1; JUMP01000172.1; JUMP01000173.1; JUMP01000174.1; JUMP01000175.1; JUMP01000176.1; JUMP01000016.1; JUMP01000178.1; JUMP01000179.1; JUMP01000181.1; JUMP01000017.1; JUMP01000184.1; JUMP01000185.1; JUMP01000186.1; JUMP01000187.1; JUMP01000188.1; JUMP01000018.1; JUMP01000189.1; JUMP01000190.1; JUMP01000193.1; JUMP01000194.1; JUMP01000195.1; JUMP01000196.1; JUMP01000019.1; JUMP01000197.1; JUMP01000199.1; JUMP01000200.1; JUMP01000201.1; JUMP01000202.1; JUMP01000205.1; JUMP01000206.1; JUMP01000207.1; JUMP01000208.1; JUMP01000209.1; JUMP01000210.1; JUMP01000211.1; JUMP01000212.1; JUMP01000022.1; JUMP01000025.1; JUMP01000026.1; JUMP01000027.1; JUMP01000028.1; JUMP01000029.1; JUMP01000030.1; JUMP01000004.1; JUMP01000031.1

Compact view

JUMP01000145.1 - Region 1 - Pyruvate2acetate-formate

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Location: 7,194 - 28,679 nt. (total: 21,486 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JUMP01000183.1 - Region 1 - gallic_acid_met

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Location: 9,609 - 22,192 nt. (total: 12,584 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

JUMP01000198.1 - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 1 - 9,472 nt. (total: 9,472 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.