GCA_001075325.1 - 12 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

JUNV01000360.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	lanthipeptide-class-ii	1	6,474	salivaricin A	RiPP:Lanthipeptide	50%

JUNV01000038.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 54.1	NRPS-like	1	5,970	qinichelins	NRP	22%

JUNV01000477.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 114.1	RiPP-like	1,416	13,512

JUNV01000651.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 245.1	T3PKS	1	6,299

JUNV01000748.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 313.1	siderophore	1	13,664	aerobactin	Other	83%

JUNV01000771.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 332.1	RiPP-like	1	5,863

JUNV01000914.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 442.1	RiPP-like	11,363	21,590

JUNV01000098.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 531.1	RiPP-like	1	8,210

JUNV01000105.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 594.1	RiPP-like	11,367	22,398

JUNV01000181.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 646.1	T1PKS,NRPS	1	38,097	yersiniabactin	NRP + Polyketide	17%

JUNV01000242.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 687.1	redox-cofactor	1	10,477	lankacidin C	NRP + Polyketide	13%

JUNV01000304.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 737.1	thiopeptide	1	18,723

No secondary metabolite regions were found in these records:: JUNV01000333.1; JUNV01000335.1; JUNV01000336.1; JUNV01000337.1; JUNV01000338.1; JUNV01000339.1; JUNV01000340.1; JUNV01000341.1; JUNV01000344.1; JUNV01000346.1; JUNV01000347.1; JUNV01000348.1; JUNV01000349.1; JUNV01000351.1; JUNV01000352.1; JUNV01000033.1; JUNV01000353.1; JUNV01000354.1; JUNV01000355.1; JUNV01000003.1; JUNV01000359.1; JUNV01000362.1; JUNV01000364.1; JUNV01000366.1; JUNV01000367.1; JUNV01000369.1; JUNV01000370.1; JUNV01000371.1; JUNV01000372.1; JUNV01000373.1; JUNV01000374.1; JUNV01000375.1; JUNV01000034.1; JUNV01000376.1; JUNV01000378.1; JUNV01000379.1; JUNV01000382.1; JUNV01000383.1; JUNV01000384.1; JUNV01000386.1; JUNV01000388.1; JUNV01000036.1; JUNV01000390.1; JUNV01000391.1; JUNV01000392.1; JUNV01000393.1; JUNV01000394.1; JUNV01000037.1; JUNV01000396.1; JUNV01000397.1; JUNV01000399.1; JUNV01000400.1; JUNV01000404.1; JUNV01000406.1; JUNV01000407.1; JUNV01000409.1; JUNV01000410.1; JUNV01000411.1; JUNV01000412.1; JUNV01000413.1; JUNV01000414.1; JUNV01000415.1; JUNV01000417.1; JUNV01000419.1; JUNV01000420.1; JUNV01000421.1; JUNV01000423.1; JUNV01000424.1; JUNV01000425.1; JUNV01000426.1; JUNV01000427.1; JUNV01000430.1; JUNV01000432.1; JUNV01000433.1; JUNV01000041.1; JUNV01000434.1; JUNV01000435.1; JUNV01000437.1; JUNV01000438.1; JUNV01000439.1; JUNV01000440.1; JUNV01000442.1; JUNV01000443.1; JUNV01000444.1; JUNV01000445.1; JUNV01000446.1; JUNV01000447.1; JUNV01000449.1; JUNV01000042.1; JUNV01000450.1; JUNV01000451.1; JUNV01000452.1; JUNV01000453.1; JUNV01000454.1; JUNV01000455.1; JUNV01000043.1; JUNV01000456.1; JUNV01000457.1; JUNV01000458.1; JUNV01000459.1; JUNV01000460.1; JUNV01000461.1; JUNV01000463.1; JUNV01000464.1; JUNV01000468.1; JUNV01000044.1; JUNV01000471.1; JUNV01000473.1; JUNV01000474.1; JUNV01000475.1; JUNV01000476.1; JUNV01000480.1; JUNV01000481.1; JUNV01000482.1; JUNV01000483.1; JUNV01000484.1; JUNV01000487.1; JUNV01000488.1; JUNV01000005.1; JUNV01000489.1; JUNV01000492.1; JUNV01000494.1; JUNV01000495.1; JUNV01000496.1; JUNV01000497.1; JUNV01000498.1; JUNV01000499.1; JUNV01000500.1; JUNV01000501.1; JUNV01000502.1; JUNV01000503.1; JUNV01000505.1; JUNV01000506.1; JUNV01000507.1; JUNV01000509.1; JUNV01000510.1; JUNV01000512.1; JUNV01000513.1; JUNV01000514.1; JUNV01000515.1; JUNV01000516.1; JUNV01000517.1; JUNV01000519.1; JUNV01000522.1; JUNV01000523.1; JUNV01000525.1; JUNV01000527.1; JUNV01000528.1; JUNV01000530.1; JUNV01000533.1; JUNV01000534.1; JUNV01000535.1; JUNV01000537.1; JUNV01000540.1; JUNV01000541.1; JUNV01000542.1; JUNV01000544.1; JUNV01000545.1; JUNV01000546.1; JUNV01000547.1; JUNV01000548.1; JUNV01000549.1; JUNV01000550.1; JUNV01000551.1; JUNV01000552.1; JUNV01000553.1; JUNV01000047.1; JUNV01000554.1; JUNV01000555.1; JUNV01000556.1; JUNV01000558.1; JUNV01000559.1; JUNV01000048.1; JUNV01000560.1; JUNV01000563.1; JUNV01000564.1; JUNV01000565.1; JUNV01000566.1; JUNV01000050.1; JUNV01000567.1; JUNV01000568.1; JUNV01000573.1; JUNV01000575.1; JUNV01000576.1; JUNV01000577.1; JUNV01000578.1; JUNV01000579.1; JUNV01000580.1; JUNV01000051.1; JUNV01000006.1; JUNV01000582.1; JUNV01000584.1; JUNV01000585.1; JUNV01000588.1; JUNV01000589.1; JUNV01000594.1; JUNV01000595.1; JUNV01000596.1; JUNV01000052.1; JUNV01000598.1; JUNV01000599.1; JUNV01000600.1; JUNV01000602.1; JUNV01000603.1; JUNV01000053.1; JUNV01000606.1; JUNV01000607.1; JUNV01000608.1; JUNV01000609.1; JUNV01000610.1; JUNV01000611.1; JUNV01000612.1; JUNV01000613.1; JUNV01000615.1; JUNV01000616.1; JUNV01000617.1; JUNV01000618.1; JUNV01000619.1; JUNV01000620.1; JUNV01000621.1; JUNV01000623.1; JUNV01000624.1; JUNV01000625.1; JUNV01000627.1; JUNV01000628.1; JUNV01000630.1; JUNV01000631.1; JUNV01000632.1; JUNV01000633.1; JUNV01000636.1; JUNV01000054.1; JUNV01000640.1; JUNV01000641.1; JUNV01000642.1; JUNV01000643.1; JUNV01000644.1; JUNV01000645.1; JUNV01000646.1; JUNV01000648.1; JUNV01000649.1; JUNV01000650.1; JUNV01000652.1; JUNV01000653.1; JUNV01000654.1; JUNV01000655.1; JUNV01000659.1; JUNV01000660.1; JUNV01000661.1; JUNV01000662.1; JUNV01000663.1; JUNV01000665.1; JUNV01000668.1; JUNV01000669.1; JUNV01000671.1; JUNV01000673.1; JUNV01000675.1; JUNV01000676.1; JUNV01000678.1; JUNV01000057.1; JUNV01000679.1; JUNV01000680.1; JUNV01000681.1; JUNV01000682.1; JUNV01000683.1; JUNV01000058.1; JUNV01000685.1; JUNV01000687.1; JUNV01000688.1; JUNV01000689.1; JUNV01000692.1; JUNV01000693.1; JUNV01000694.1; JUNV01000695.1; JUNV01000696.1; JUNV01000699.1; JUNV01000700.1; JUNV01000701.1; JUNV01000702.1; JUNV01000703.1; JUNV01000704.1; JUNV01000705.1; JUNV01000706.1; JUNV01000707.1; JUNV01000708.1; JUNV01000709.1; JUNV01000059.1; JUNV01000713.1; JUNV01000715.1; JUNV01000716.1; JUNV01000717.1; JUNV01000718.1; JUNV01000719.1; JUNV01000720.1; JUNV01000722.1; JUNV01000062.1; JUNV01000725.1; JUNV01000726.1; JUNV01000727.1; JUNV01000728.1; JUNV01000729.1; JUNV01000063.1; JUNV01000733.1; JUNV01000740.1; JUNV01000742.1; JUNV01000743.1; JUNV01000744.1; JUNV01000745.1; JUNV01000746.1; JUNV01000749.1; JUNV01000064.1; JUNV01000750.1; JUNV01000751.1; JUNV01000753.1; JUNV01000754.1; JUNV01000755.1; JUNV01000756.1; JUNV01000007.1; JUNV01000758.1; JUNV01000759.1; JUNV01000760.1; JUNV01000761.1; JUNV01000762.1; JUNV01000763.1; JUNV01000764.1; JUNV01000769.1; JUNV01000770.1; JUNV01000772.1; JUNV01000773.1; JUNV01000774.1; JUNV01000775.1; JUNV01000777.1; JUNV01000778.1; JUNV01000065.1; JUNV01000779.1; JUNV01000780.1; JUNV01000782.1; JUNV01000783.1; JUNV01000066.1; JUNV01000784.1; JUNV01000785.1; JUNV01000787.1; JUNV01000008.1; JUNV01000790.1; JUNV01000791.1; JUNV01000792.1; JUNV01000796.1; JUNV01000798.1; JUNV01000800.1; JUNV01000802.1; JUNV01000803.1; JUNV01000804.1; JUNV01000805.1; JUNV01000067.1; JUNV01000808.1; JUNV01000810.1; JUNV01000811.1; JUNV01000812.1; JUNV01000813.1; JUNV01000068.1; JUNV01000814.1; JUNV01000815.1; JUNV01000817.1; JUNV01000819.1; JUNV01000820.1; JUNV01000821.1; JUNV01000822.1; JUNV01000823.1; JUNV01000824.1; JUNV01000826.1; JUNV01000829.1; JUNV01000830.1; JUNV01000831.1; JUNV01000833.1; JUNV01000834.1; JUNV01000835.1; JUNV01000836.1; JUNV01000839.1; JUNV01000841.1; JUNV01000844.1; JUNV01000845.1; JUNV01000847.1; JUNV01000071.1; JUNV01000849.1; JUNV01000850.1; JUNV01000851.1; JUNV01000853.1; JUNV01000072.1; JUNV01000854.1; JUNV01000855.1; JUNV01000856.1; JUNV01000073.1; JUNV01000859.1; JUNV01000860.1; JUNV01000862.1; JUNV01000863.1; JUNV01000864.1; JUNV01000865.1; JUNV01000866.1; JUNV01000867.1; JUNV01000868.1; JUNV01000074.1; JUNV01000870.1; JUNV01000872.1; JUNV01000873.1; JUNV01000875.1; JUNV01000076.1; JUNV01000877.1; JUNV01000879.1; JUNV01000077.1; JUNV01000880.1; JUNV01000881.1; JUNV01000883.1; JUNV01000884.1; JUNV01000885.1; JUNV01000078.1; JUNV01000887.1; JUNV01000888.1; JUNV01000889.1; JUNV01000890.1; JUNV01000891.1; JUNV01000892.1; JUNV01000894.1; JUNV01000895.1; JUNV01000896.1; JUNV01000899.1; JUNV01000900.1; JUNV01000901.1; JUNV01000902.1; JUNV01000906.1; JUNV01000908.1; JUNV01000909.1; JUNV01000910.1; JUNV01000911.1; JUNV01000912.1; JUNV01000913.1; JUNV01000915.1; JUNV01000916.1; JUNV01000917.1; JUNV01000918.1; JUNV01000920.1; JUNV01000082.1; JUNV01000923.1; JUNV01000924.1; JUNV01000925.1; JUNV01000083.1; JUNV01000927.1; JUNV01000929.1; JUNV01000930.1; JUNV01000932.1; JUNV01000933.1; JUNV01000934.1; JUNV01000935.1; JUNV01000936.1; JUNV01000938.1; JUNV01000939.1; JUNV01000940.1; JUNV01000941.1; JUNV01000942.1; JUNV01000943.1; JUNV01000944.1; JUNV01000085.1; JUNV01000947.1; JUNV01000086.1; JUNV01000948.1; JUNV01000949.1; JUNV01000087.1; JUNV01000952.1; JUNV01000953.1; JUNV01000954.1; JUNV01000955.1; JUNV01000957.1; JUNV01000958.1; JUNV01000089.1; JUNV01000009.1; JUNV01000959.1; JUNV01000090.1; JUNV01000961.1; JUNV01000962.1; JUNV01000964.1; JUNV01000091.1; JUNV01000967.1; JUNV01000968.1; JUNV01000969.1; JUNV01000970.1; JUNV01000971.1; JUNV01000972.1; JUNV01000974.1; JUNV01000093.1; JUNV01000975.1; JUNV01000976.1; JUNV01000977.1; JUNV01000979.1; JUNV01000980.1; JUNV01000095.1; JUNV01000982.1; JUNV01000984.1; JUNV01000096.1; JUNV01000010.1; JUNV01000001.1; JUNV01000985.1; JUNV01000986.1; JUNV01000987.1; JUNV01000988.1; JUNV01000989.1; JUNV01000990.1; JUNV01000991.1; JUNV01000992.1; JUNV01000994.1; JUNV01000995.1; JUNV01000997.1; JUNV01000998.1; JUNV01000999.1; JUNV01001001.1; JUNV01001002.1; JUNV01001003.1; JUNV01001004.1; JUNV01000097.1; JUNV01001006.1; JUNV01001009.1; JUNV01001010.1; JUNV01001011.1; JUNV01001013.1; JUNV01001015.1; JUNV01001017.1; JUNV01001018.1; JUNV01001019.1; JUNV01001021.1; JUNV01001022.1; JUNV01001025.1; JUNV01001027.1; JUNV01000099.1; JUNV01001030.1; JUNV01001032.1; JUNV01001033.1; JUNV01001034.1; JUNV01001035.1; JUNV01001037.1; JUNV01000100.1; JUNV01001038.1; JUNV01001039.1; JUNV01001040.1; JUNV01001042.1; JUNV01001045.1; JUNV01001047.1; JUNV01001050.1; JUNV01001052.1; JUNV01000101.1; JUNV01000011.1; JUNV01001054.1; JUNV01001055.1; JUNV01001056.1; JUNV01001057.1; JUNV01001058.1; JUNV01001059.1; JUNV01001060.1; JUNV01000102.1; JUNV01001064.1; JUNV01001065.1; JUNV01001066.1; JUNV01001067.1; JUNV01000103.1; JUNV01001068.1; JUNV01001069.1; JUNV01001072.1; JUNV01001073.1; JUNV01001074.1; JUNV01001075.1; JUNV01001077.1; JUNV01001078.1; JUNV01001079.1; JUNV01001080.1; JUNV01001081.1; JUNV01001082.1; JUNV01001083.1; JUNV01001084.1; JUNV01001087.1; JUNV01001089.1; JUNV01001093.1; JUNV01001094.1; JUNV01001095.1; JUNV01001109.1; JUNV01001113.1; JUNV01001116.1; JUNV01001117.1; JUNV01001120.1; JUNV01000012.1; JUNV01000108.1; JUNV01000013.1; JUNV01000110.1; JUNV01000112.1; JUNV01000114.1; JUNV01000115.1; JUNV01000116.1; JUNV01000117.1; JUNV01000119.1; JUNV01000120.1; JUNV01000121.1; JUNV01000126.1; JUNV01000127.1; JUNV01000128.1; JUNV01000129.1; JUNV01000131.1; JUNV01000132.1; JUNV01000133.1; JUNV01000134.1; JUNV01000136.1; JUNV01000138.1; JUNV01000139.1; JUNV01000142.1; JUNV01000143.1; JUNV01000144.1; JUNV01000145.1; JUNV01000146.1; JUNV01000147.1; JUNV01000148.1; JUNV01000149.1; JUNV01000152.1; JUNV01000153.1; JUNV01000154.1; JUNV01000156.1; JUNV01000157.1; JUNV01000161.1; JUNV01000162.1; JUNV01000164.1; JUNV01000166.1; JUNV01000168.1; JUNV01000018.1; JUNV01000170.1; JUNV01000171.1; JUNV01000172.1; JUNV01000173.1; JUNV01000175.1; JUNV01000176.1; JUNV01000178.1; JUNV01000179.1; JUNV01000180.1; JUNV01000183.1; JUNV01000184.1; JUNV01000186.1; JUNV01000188.1; JUNV01000190.1; JUNV01000192.1; JUNV01000196.1; JUNV01000199.1; JUNV01000200.1; JUNV01000201.1; JUNV01000202.1; JUNV01000203.1; JUNV01000204.1; JUNV01000205.1; JUNV01000207.1; JUNV01000208.1; JUNV01000210.1; JUNV01000211.1; JUNV01000212.1; JUNV01000213.1; JUNV01000216.1; JUNV01000217.1; JUNV01000218.1; JUNV01000219.1; JUNV01000220.1; JUNV01000221.1; JUNV01000222.1; JUNV01000223.1; JUNV01000224.1; JUNV01000225.1; JUNV01000226.1; JUNV01000228.1; JUNV01000229.1; JUNV01000024.1; JUNV01000233.1; JUNV01000234.1; JUNV01000236.1; JUNV01000238.1; JUNV01000240.1; JUNV01000241.1; JUNV01000243.1; JUNV01000244.1; JUNV01000245.1; JUNV01000246.1; JUNV01000247.1; JUNV01000026.1; JUNV01000249.1; JUNV01000250.1; JUNV01000251.1; JUNV01000254.1; JUNV01000255.1; JUNV01000256.1; JUNV01000257.1; JUNV01000258.1; JUNV01000027.1; JUNV01000261.1; JUNV01000263.1; JUNV01000264.1; JUNV01000265.1; JUNV01000266.1; JUNV01000267.1; JUNV01000268.1; JUNV01000269.1; JUNV01000271.1; JUNV01000272.1; JUNV01000028.1; JUNV01000274.1; JUNV01000275.1; JUNV01000276.1; JUNV01000278.1; JUNV01000279.1; JUNV01000280.1; JUNV01000282.1; JUNV01000284.1; JUNV01000285.1; JUNV01000286.1; JUNV01000287.1; JUNV01000288.1; JUNV01000290.1; JUNV01000291.1; JUNV01000292.1; JUNV01000293.1; JUNV01000294.1; JUNV01000029.1; JUNV01000296.1; JUNV01000298.1; JUNV01000299.1; JUNV01000302.1; JUNV01000303.1; JUNV01000305.1; JUNV01000307.1; JUNV01000311.1; JUNV01000313.1; JUNV01000030.1; JUNV01000318.1; JUNV01000319.1; JUNV01000320.1; JUNV01000322.1; JUNV01000323.1; JUNV01000324.1; JUNV01000325.1; JUNV01000031.1; JUNV01000328.1; JUNV01000330.1; JUNV01000032.1

Compact view

JUNV01000360.1 - Region 1 - lanthipeptide-class-ii

Download region GenBank file

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Location: 1 - 6,474 nt. (total: 6,474 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

Lanthipeptides

Core peptide predictions

No core peptides found.

JUNV01000038.1 - Region 1 - NRPS-like

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Location: 1 - 5,970 nt. (total: 5,970 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5970:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg54_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1..363): ser

NRPSPredictor2: ser

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

JUNV01000477.1 - Region 1 - RiPP-like

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Location: 1,416 - 13,512 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Similar known gene clusters

No matches found.

JUNV01000651.1 - Region 1 - T3PKS

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Location: 1 - 6,299 nt. (total: 6,299 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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KnownClusterBlast

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No matches found.

JUNV01000748.1 - Region 1 - siderophore

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Location: 1 - 13,664 nt. (total: 13,664 nt) Show pHMM detection rules used

Region on contig edge.

siderophore: IucA_IucC

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KnownClusterBlast

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JUNV01000771.1 - Region 1 - RiPP-like

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Location: 1 - 5,863 nt. (total: 5,863 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

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JUNV01000914.1 - Region 1 - RiPP-like

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Location: 11,363 - 21,590 nt. (total: 10,228 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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KnownClusterBlast

Similar known gene clusters

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JUNV01000098.1 - Region 1 - RiPP-like

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Location: 1 - 8,210 nt. (total: 8,210 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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KnownClusterBlast

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JUNV01000105.1 - Region 1 - RiPP-like

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Location: 11,367 - 22,398 nt. (total: 11,032 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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KnownClusterBlast

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JUNV01000181.1 - Region 1 - NRPS,T1PKS

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Location: 1 - 38,097 nt. (total: 38,097 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 38097:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (ohmal) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 33969:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (ohmal) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg646_7

Search NORINE for peptide: strict or relaxed

AMP-binding (573..966): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNMSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

ctg646_8

PKS_AT (552..842): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 62.5%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 133.0
Methoxymalonyl-CoA: 49.3
inactive: 45.5
Methylmalonyl-CoA: 42.8
Benzoyl-CoA: 42.7
Propionyl-CoA: 33.6
Isobutyryl-CoA: 30.8
fatty_acid: 25.6
Acetyl-CoA: 25.3
2-Methylbutyryl-CoA: 24.6
3-Methylbutyryl-CoA: 19.5
CHC-CoA: 16.3
trans-1,2-CPDA: 11.2
Ethylmalonyl-CoA: 6.5

ctg646_12

Search NORINE for peptide: strict or relaxed

AMP-binding (20..422): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVLCK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

JUNV01000242.1 - Region 1 - redox-cofactor

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Location: 1 - 10,477 nt. (total: 10,477 nt) Show pHMM detection rules used

Region on contig edge.

redox-cofactor: (cds(PF04055 and (TIGR04085 or SPASM)) and (TIGR02111 or TIGR03966) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]))

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JUNV01000304.1 - Region 1 - thiopeptide

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Location: 1 - 18,723 nt. (total: 18,723 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

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Thiopeptides

KnownClusterBlast

Thiopeptide predictions

No core peptides found.

Similar known gene clusters

No matches found.

Thiopeptides

Core peptide predictions

No core peptides found.