GCA_001286945.1 - 11 region(s)

Identified primary metabolite regions

CYHL01000007.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	histidine2glutamate_hutHGIU_operon	Other	96,545	121,910	Histidine to glutamate K. pneumoniae	GLU	60%

CYHL01000012.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Nitrate_reductase	E-MGC	81,458	105,288	Nitrate reductase E. coli	NIR	60%

CYHL01000013.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Putrescine2spermidine	Aliphatic_amine	138,100	152,533	Arginine degradation C. sticklandii	ARG	22%

CYHL01000016.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	fatty_acids-unassigned	Putative	698	44,033

CYHL01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Fumarate2succinate,TPP_AA_metabolism	Putative	151,993	193,950	Acetate to butyrate C. sporogenes	BUT	33%

CYHL01000028.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	hydroxybenzoate2phenol	Aromatic	2,591	24,593	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

CYHL01000034.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	acetate2butyrate	SCFA	49,868	75,227	Acetate to butyrate C. sporogenes	BUT	33%

CYHL01000039.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	fatty_acids-unassigned	Putative	1	12,956	Acetate to butyrate C. sporogenes	BUT	50%

CYHL01000044.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	fatty_acids-unassigned	Putative	35,110	93,588

CYHL01000056.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	fatty_acids-unassigned	Putative	1	22,869

CYHL01000064.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	fatty_acids-unassigned	Putative	1	39,006

No primary metabolite regions were found in these records:: CYHL01000001.1; CYHL01000002.1; CYHL01000003.1; CYHL01000004.1; CYHL01000005.1; CYHL01000006.1; CYHL01000008.1; CYHL01000009.1; CYHL01000010.1; CYHL01000011.1; CYHL01000014.1; CYHL01000015.1; CYHL01000017.1; CYHL01000018.1; CYHL01000019.1; CYHL01000020.1; CYHL01000021.1; CYHL01000022.1; CYHL01000023.1; CYHL01000024.1; CYHL01000026.1; CYHL01000027.1; CYHL01000029.1; CYHL01000030.1; CYHL01000031.1; CYHL01000032.1; CYHL01000033.1; CYHL01000035.1; CYHL01000036.1; CYHL01000037.1; CYHL01000038.1; CYHL01000040.1; CYHL01000041.1; CYHL01000042.1; CYHL01000043.1; CYHL01000045.1; CYHL01000046.1; CYHL01000047.1; CYHL01000048.1; CYHL01000050.1; CYHL01000051.1; CYHL01000053.1; CYHL01000054.1; CYHL01000057.1; CYHL01000058.1; CYHL01000060.1; CYHL01000061.1; CYHL01000062.1; CYHL01000065.1; CYHL01000066.1; CYHL01000067.1; CYHL01000068.1; CYHL01000069.1; CYHL01000070.1; CYHL01000071.1; CYHL01000074.1; CYHL01000076.1; CYHL01000078.1; CYHL01000080.1; CYHL01000081.1; CYHL01000082.1; CYHL01000083.1; CYHL01000086.1; CYHL01000087.1; CYHL01000089.1; CYHL01000090.1; CYHL01000092.1; CYHL01000093.1; CYHL01000094.1; CYHL01000095.1; CYHL01000097.1; CYHL01000098.1; CYHL01000099.1; CYHL01000100.1; CYHL01000102.1; CYHL01000103.1; CYHL01000105.1; CYHL01000106.1; CYHL01000107.1; CYHL01000110.1; CYHL01000112.1; CYHL01000116.1; CYHL01000120.1; CYHL01000122.1; CYHL01000123.1; CYHL01000124.1; CYHL01000128.1

Compact view

CYHL01000007.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 96,545 - 121,910 nt. (total: 25,366 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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CYHL01000012.1 - Region 1 - Nitrate_reductase

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Location: 81,458 - 105,288 nt. (total: 23,831 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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CYHL01000013.1 - Region 1 - Putrescine2spermidine

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Location: 138,100 - 152,533 nt. (total: 14,434 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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CYHL01000016.1 - Region 1 - fatty_acids-unassigned

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Location: 698 - 44,033 nt. (total: 43,336 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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No matches found.

CYHL01000025.1 - Region 1 - Fumarate2succinate,TPP_AA_metabolism

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Location: 151,993 - 193,950 nt. (total: 41,958 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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transport-related genes

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resistance genes

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CYHL01000028.1 - Region 1 - hydroxybenzoate2phenol

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Location: 2,591 - 24,593 nt. (total: 22,003 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

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CYHL01000034.1 - Region 1 - acetate2butyrate

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Location: 49,868 - 75,227 nt. (total: 25,360 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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CYHL01000039.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 12,956 nt. (total: 12,956 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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CYHL01000044.1 - Region 1 - fatty_acids-unassigned

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Location: 35,110 - 93,588 nt. (total: 58,479 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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CYHL01000056.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 22,869 nt. (total: 22,869 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.

CYHL01000064.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 39,006 nt. (total: 39,006 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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No matches found.