GCA_001311295.1 - 2 region(s)

Identified primary metabolite regions

BBAO01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	18,125	57,349	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

BBAO01000015.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Others_HGD_unassigned	Putative	24,205	43,129

No primary metabolite regions were found in these records:: BBAO01000001.1; BBAO01000002.1; BBAO01000003.1; BBAO01000004.1; BBAO01000005.1; BBAO01000007.1; BBAO01000008.1; BBAO01000009.1; BBAO01000010.1; BBAO01000011.1; BBAO01000012.1; BBAO01000013.1; BBAO01000014.1; BBAO01000016.1; BBAO01000017.1; BBAO01000018.1; BBAO01000019.1; BBAO01000020.1; BBAO01000021.1; BBAO01000022.1; BBAO01000023.1; BBAO01000024.1; BBAO01000025.1; BBAO01000026.1; BBAO01000027.1; BBAO01000028.1; BBAO01000029.1; BBAO01000030.1; BBAO01000031.1; BBAO01000032.1; BBAO01000033.1; BBAO01000034.1; BBAO01000035.1; BBAO01000036.1; BBAO01000037.1; BBAO01000038.1; BBAO01000039.1; BBAO01000040.1; BBAO01000041.1; BBAO01000042.1; BBAO01000043.1; BBAO01000044.1; BBAO01000045.1; BBAO01000046.1; BBAO01000047.1; BBAO01000048.1; BBAO01000049.1; BBAO01000050.1; BBAO01000051.1; BBAO01000052.1; BBAO01000053.1; BBAO01000054.1; BBAO01000055.1; BBAO01000056.1; BBAO01000057.1; BBAO01000058.1; BBAO01000059.1; BBAO01000060.1; BBAO01000061.1; BBAO01000062.1; BBAO01000063.1; BBAO01000064.1; BBAO01000065.1; BBAO01000066.1; BBAO01000067.1; BBAO01000068.1; BBAO01000069.1; BBAO01000070.1; BBAO01000071.1; BBAO01000072.1; BBAO01000073.1; BBAO01000074.1; BBAO01000075.1; BBAO01000076.1; BBAO01000077.1; BBAO01000078.1; BBAO01000079.1; BBAO01000080.1; BBAO01000081.1; BBAO01000082.1; BBAO01000083.1; BBAO01000084.1; BBAO01000085.1; BBAO01000086.1; BBAO01000087.1; BBAO01000088.1; BBAO01000089.1; BBAO01000090.1; BBAO01000091.1; BBAO01000092.1; BBAO01000093.1; BBAO01000094.1; BBAO01000095.1; BBAO01000096.1; BBAO01000097.1; BBAO01000098.1; BBAO01000099.1; BBAO01000100.1; BBAO01000101.1; BBAO01000102.1; BBAO01000103.1; BBAO01000104.1; BBAO01000105.1; BBAO01000106.1; BBAO01000107.1; BBAO01000108.1; BBAO01000109.1; BBAO01000110.1; BBAO01000111.1; BBAO01000112.1; BBAO01000113.1; BBAO01000114.1; BBAO01000115.1; BBAO01000116.1; BBAO01000117.1; BBAO01000118.1; BBAO01000119.1; BBAO01000120.1; BBAO01000121.1; BBAO01000122.1; BBAO01000123.1

Compact view

BBAO01000006.1 - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 18,125 - 57,349 nt. (total: 39,225 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

BBAO01000015.1 - Region 1 - Others_HGD_unassigned

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Location: 24,205 - 43,129 nt. (total: 18,925 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.