GCA_001587215.1 - 7 region(s)

Identified primary metabolite regions

LQYI01000087.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Putrescine2spermidine	Aliphatic_amine	1	20,223	Arginine2putrescine R. gnavus	PUTR	40%

LQYI01000138.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	TPP_AA_metabolism	Putative	1	26,492

LQYI01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	Fumarate2succinate	SCFA	49,284	71,875	Caffeate respiration A. woodii	CAF	40%

LQYI01000195.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 128.1	Nitrate_reductase	E-MGC	71,875	97,665	Nitrate reductase E. coli	NIR	60%

LQYI01000063.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 160.1	fatty_acids-unassigned	Putative	6,328	21,787	Acetate to butyrate C. sporogenes	BUT	33%

LQYI01000070.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 168.1	fatty_acids-unassigned	Putative	28,933	47,502	Acetate to butyrate C. sporogenes	BUT	33%

LQYI01000082.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 180.1	fatty_acids-unassigned	Putative	1	14,598	Acetate to butyrate C. sporogenes	BUT	50%

No primary metabolite regions were found in these records:: LQYI01000001.1; LQYI01000010.1; LQYI01000083.1; LQYI01000084.1; LQYI01000085.1; LQYI01000086.1; LQYI01000088.1; LQYI01000089.1; LQYI01000090.1; LQYI01000011.1; LQYI01000091.1; LQYI01000092.1; LQYI01000093.1; LQYI01000094.1; LQYI01000095.1; LQYI01000012.1; LQYI01000096.1; LQYI01000097.1; LQYI01000098.1; LQYI01000099.1; LQYI01000100.1; LQYI01000101.1; LQYI01000102.1; LQYI01000103.1; LQYI01000104.1; LQYI01000013.1; LQYI01000105.1; LQYI01000106.1; LQYI01000107.1; LQYI01000108.1; LQYI01000109.1; LQYI01000110.1; LQYI01000111.1; LQYI01000112.1; LQYI01000014.1; LQYI01000113.1; LQYI01000114.1; LQYI01000115.1; LQYI01000116.1; LQYI01000117.1; LQYI01000118.1; LQYI01000119.1; LQYI01000015.1; LQYI01000120.1; LQYI01000121.1; LQYI01000122.1; LQYI01000123.1; LQYI01000124.1; LQYI01000016.1; LQYI01000125.1; LQYI01000127.1; LQYI01000128.1; LQYI01000129.1; LQYI01000130.1; LQYI01000131.1; LQYI01000132.1; LQYI01000133.1; LQYI01000134.1; LQYI01000135.1; LQYI01000136.1; LQYI01000139.1; LQYI01000140.1; LQYI01000141.1; LQYI01000142.1; LQYI01000143.1; LQYI01000144.1; LQYI01000145.1; LQYI01000146.1; LQYI01000147.1; LQYI01000017.1; LQYI01000148.1; LQYI01000149.1; LQYI01000150.1; LQYI01000151.1; LQYI01000152.1; LQYI01000018.1; LQYI01000154.1; LQYI01000155.1; LQYI01000156.1; LQYI01000157.1; LQYI01000019.1; LQYI01000158.1; LQYI01000159.1; LQYI01000160.1; LQYI01000161.1; LQYI01000162.1; LQYI01000020.1; LQYI01000163.1; LQYI01000164.1; LQYI01000021.1; LQYI01000166.1; LQYI01000168.1; LQYI01000022.1; LQYI01000169.1; LQYI01000172.1; LQYI01000173.1; LQYI01000023.1; LQYI01000174.1; LQYI01000175.1; LQYI01000176.1; LQYI01000177.1; LQYI01000024.1; LQYI01000178.1; LQYI01000025.1; LQYI01000026.1; LQYI01000185.1; LQYI01000003.1; LQYI01000027.1; LQYI01000028.1; LQYI01000029.1; LQYI01000188.1; LQYI01000030.1; LQYI01000031.1; LQYI01000032.1; LQYI01000191.1; LQYI01000004.1; LQYI01000033.1; LQYI01000192.1; LQYI01000034.1; LQYI01000035.1; LQYI01000036.1; LQYI01000193.1; LQYI01000037.1; LQYI01000194.1; LQYI01000038.1; LQYI01000039.1; LQYI01000196.1; LQYI01000040.1; LQYI01000041.1; LQYI01000197.1; LQYI01000005.1; LQYI01000042.1; LQYI01000043.1; LQYI01000044.1; LQYI01000045.1; LQYI01000046.1; LQYI01000047.1; LQYI01000048.1; LQYI01000049.1; LQYI01000006.1; LQYI01000050.1; LQYI01000201.1; LQYI01000051.1; LQYI01000052.1; LQYI01000053.1; LQYI01000054.1; LQYI01000055.1; LQYI01000056.1; LQYI01000057.1; LQYI01000058.1; LQYI01000007.1; LQYI01000059.1; LQYI01000060.1; LQYI01000061.1; LQYI01000062.1; LQYI01000064.1; LQYI01000065.1; LQYI01000008.1; LQYI01000066.1; LQYI01000067.1; LQYI01000068.1; LQYI01000069.1; LQYI01000071.1; LQYI01000072.1; LQYI01000073.1; LQYI01000074.1; LQYI01000009.1; LQYI01000075.1; LQYI01000076.1; LQYI01000077.1; LQYI01000078.1; LQYI01000079.1; LQYI01000081.1

Compact view

LQYI01000087.1 - Region 1 - Putrescine2spermidine

Download region GenBank file

Location: 1 - 20,223 nt. (total: 20,223 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LQYI01000138.1 - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 1 - 26,492 nt. (total: 26,492 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LQYI01000002.1 - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 49,284 - 71,875 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LQYI01000195.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 71,875 - 97,665 nt. (total: 25,791 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LQYI01000063.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 6,328 - 21,787 nt. (total: 15,460 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LQYI01000070.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 28,933 - 47,502 nt. (total: 18,570 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LQYI01000082.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 1 - 14,598 nt. (total: 14,598 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters