GCA_001587225.1 - 6 region(s)

Identified primary metabolite regions

LQYG01000069.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	TPP_AA_metabolism	Putative	1	26,532

LQYG01000113.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Fumarate2succinate	SCFA	77,975	100,566	Caffeate respiration A. woodii	CAF	40%

LQYG01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	Putrescine2spermidine	Aliphatic_amine	43,715	66,041	Arginine2putrescine R. gnavus	PUTR	40%

LQYG01000044.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	Pyruvate2acetate-formate	SCFA	1	13,520	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

LQYG01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	fatty_acids-unassigned	Putative	1	24,271	Acetate to butyrate C. sporogenes	BUT	33%

LQYG01000056.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 90.1	fatty_acids-unassigned	Putative	11,945	35,476	Acetate to butyrate C. sporogenes	BUT	33%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 3.1	TPP_AA_metabolism	Putative	1	26,532
Region 50.1	Fumarate2succinate	SCFA	77,975	100,566	Caffeate respiration A. woodii	CAF	40%
Region 69.1	Putrescine2spermidine	Aliphatic_amine	43,715	66,041	Arginine2putrescine R. gnavus	PUTR	40%
Region 76.1	Pyruvate2acetate-formate	SCFA	1	13,520	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 77.1	fatty_acids-unassigned	Putative	1	24,271	Acetate to butyrate C. sporogenes	BUT	33%
Region 90.1	fatty_acids-unassigned	Putative	11,945	35,476	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: LQYG01000001.1; LQYG01000007.1; LQYG01000070.1; LQYG01000072.1; LQYG01000008.1; LQYG01000073.1; LQYG01000074.1; LQYG01000076.1; LQYG01000009.1; LQYG01000077.1; LQYG01000010.1; LQYG01000078.1; LQYG01000079.1; LQYG01000081.1; LQYG01000011.1; LQYG01000083.1; LQYG01000084.1; LQYG01000086.1; LQYG01000087.1; LQYG01000012.1; LQYG01000088.1; LQYG01000089.1; LQYG01000090.1; LQYG01000092.1; LQYG01000093.1; LQYG01000013.1; LQYG01000014.1; LQYG01000096.1; LQYG01000097.1; LQYG01000098.1; LQYG01000015.1; LQYG01000016.1; LQYG01000102.1; LQYG01000103.1; LQYG01000105.1; LQYG01000106.1; LQYG01000107.1; LQYG01000017.1; LQYG01000018.1; LQYG01000019.1; LQYG01000020.1; LQYG01000108.1; LQYG01000021.1; LQYG01000022.1; LQYG01000109.1; LQYG01000023.1; LQYG01000024.1; LQYG01000112.1; LQYG01000114.1; LQYG01000025.1; LQYG01000115.1; LQYG01000026.1; LQYG01000027.1; LQYG01000116.1; LQYG01000028.1; LQYG01000029.1; LQYG01000117.1; LQYG01000118.1; LQYG01000032.1; LQYG01000119.1; LQYG01000033.1; LQYG01000034.1; LQYG01000035.1; LQYG01000120.1; LQYG01000036.1; LQYG01000037.1; LQYG01000038.1; LQYG01000039.1; LQYG01000040.1; LQYG01000041.1; LQYG01000042.1; LQYG01000043.1; LQYG01000045.1; LQYG01000046.1; LQYG01000047.1; LQYG01000048.1; LQYG01000049.1; LQYG01000050.1; LQYG01000004.1; LQYG01000051.1; LQYG01000052.1; LQYG01000053.1; LQYG01000054.1; LQYG01000055.1; LQYG01000057.1; LQYG01000005.1; LQYG01000058.1; LQYG01000059.1; LQYG01000060.1; LQYG01000061.1; LQYG01000062.1; LQYG01000006.1; LQYG01000064.1; LQYG01000065.1; LQYG01000066.1; LQYG01000067.1

Compact view

LQYG01000069.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 26,532 nt. (total: 26,532 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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No matches found.

LQYG01000113.1 - Region 1 - Fumarate2succinate

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Location: 77,975 - 100,566 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LQYG01000002.1 - Region 1 - Putrescine2spermidine

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Location: 43,715 - 66,041 nt. (total: 22,327 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LQYG01000044.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,520 nt. (total: 13,520 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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LQYG01000003.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 24,271 nt. (total: 24,271 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LQYG01000056.1 - Region 1 - fatty_acids-unassigned

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Location: 11,945 - 35,476 nt. (total: 23,532 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters