Select genomic region:
Overview
2.1
40.1
112.1
114.1
123.1
153.1

### Identified secondary metabolite regions using strictness 'relaxed'

LQYJ01000010.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | betalactone | 17,246 | 40,915 | fengycin | NRP | 40%

LQYJ01000113.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 40.1 | RiPP-like | 1 | 5,415 |

LQYJ01000039.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 112.1 | LAP | 67,480 | 83,346 | listeriolysin S | RiPP:LAP | 50%

LQYJ01000041.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 114.1 | T3PKS | 1 | 6,484 |

LQYJ01000049.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 123.1 | epipeptide | 1 | 20,599 |

LQYJ01000075.1

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 153.1 | RiPP-like | 1 | 5,438 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 2.1 | betalactone | 17,246 | 40,915 | fengycin | NRP | 40%
Region 40.1 | RiPP-like | 1 | 5,415 |
Region 112.1 | LAP | 67,480 | 83,346 | listeriolysin S | RiPP:LAP | 50%
Region 114.1 | T3PKS | 1 | 6,484 |
Region 123.1 | epipeptide | 1 | 20,599 |
Region 153.1 | RiPP-like | 1 | 5,438 |

No secondary metabolite regions were found in these records:
  LQYJ01000001.1
  LQYJ01000079.1
  LQYJ01000080.1
  LQYJ01000081.1
  LQYJ01000082.1
  LQYJ01000083.1
  LQYJ01000011.1
  LQYJ01000084.1
  LQYJ01000085.1
  LQYJ01000086.1
  LQYJ01000087.1
  LQYJ01000088.1
  LQYJ01000090.1
  LQYJ01000091.1
  LQYJ01000092.1
  LQYJ01000093.1
  LQYJ01000012.1
  LQYJ01000094.1
  LQYJ01000095.1
  LQYJ01000096.1
  LQYJ01000097.1
  LQYJ01000098.1
  LQYJ01000099.1
  LQYJ01000100.1
  LQYJ01000101.1
  LQYJ01000102.1
  LQYJ01000103.1
  LQYJ01000104.1
  LQYJ01000105.1
  LQYJ01000106.1
  LQYJ01000107.1
  LQYJ01000108.1
  LQYJ01000013.1
  LQYJ01000109.1
  LQYJ01000110.1
  LQYJ01000111.1
  LQYJ01000014.1
  LQYJ01000112.1
  LQYJ01000114.1
  LQYJ01000115.1
  LQYJ01000116.1
  LQYJ01000117.1
  LQYJ01000015.1
  LQYJ01000118.1
  LQYJ01000119.1
  LQYJ01000120.1
  LQYJ01000121.1
  LQYJ01000122.1
  LQYJ01000123.1
  LQYJ01000124.1
  LQYJ01000125.1
  LQYJ01000126.1
  LQYJ01000127.1
  LQYJ01000128.1
  LQYJ01000129.1
  LQYJ01000130.1
  LQYJ01000131.1
  LQYJ01000133.1
  LQYJ01000016.1
  LQYJ01000134.1
  LQYJ01000136.1
  LQYJ01000137.1
  LQYJ01000002.1
  LQYJ01000017.1
  LQYJ01000138.1
  LQYJ01000140.1
  LQYJ01000141.1
  LQYJ01000018.1
  LQYJ01000142.1
  LQYJ01000143.1
  LQYJ01000144.1
  LQYJ01000019.1
  LQYJ01000146.1
  LQYJ01000020.1
  LQYJ01000148.1
  LQYJ01000149.1
  LQYJ01000150.1
  LQYJ01000151.1
  LQYJ01000152.1
  LQYJ01000153.1
  LQYJ01000156.1
  LQYJ01000158.1
  LQYJ01000160.1
  LQYJ01000021.1
  LQYJ01000161.1
  LQYJ01000003.1
  LQYJ01000022.1
  LQYJ01000162.1
  LQYJ01000023.1
  LQYJ01000024.1
  LQYJ01000167.1
  LQYJ01000025.1
  LQYJ01000026.1
  LQYJ01000027.1
  LQYJ01000028.1
  LQYJ01000171.1
  LQYJ01000172.1
  LQYJ01000029.1
  LQYJ01000030.1
  LQYJ01000031.1
  LQYJ01000004.1
  LQYJ01000032.1
  LQYJ01000173.1
  LQYJ01000033.1
  LQYJ01000034.1
  LQYJ01000035.1
  LQYJ01000036.1
  LQYJ01000037.1
  LQYJ01000038.1
  LQYJ01000040.1
  LQYJ01000005.1
  LQYJ01000042.1
  LQYJ01000043.1
  LQYJ01000044.1
  LQYJ01000045.1
  LQYJ01000046.1
  LQYJ01000047.1
  LQYJ01000048.1
  LQYJ01000006.1
  LQYJ01000050.1
  LQYJ01000051.1
  LQYJ01000183.1
  LQYJ01000052.1
  LQYJ01000053.1
  LQYJ01000054.1
  LQYJ01000055.1
  LQYJ01000056.1
  LQYJ01000057.1
  LQYJ01000058.1
  LQYJ01000059.1
  LQYJ01000007.1
  LQYJ01000060.1
  LQYJ01000061.1
  LQYJ01000062.1
  LQYJ01000063.1
  LQYJ01000064.1
  LQYJ01000065.1
  LQYJ01000066.1
  LQYJ01000067.1
  LQYJ01000008.1
  LQYJ01000068.1
  LQYJ01000069.1
  LQYJ01000070.1
  LQYJ01000009.1
  LQYJ01000072.1
  LQYJ01000073.1
  LQYJ01000074.1
  LQYJ01000076.1
  LQYJ01000077.1
  LQYJ01000078.1

Compact view
LQYJ01000010.1 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 17,246 - 40,915 nt. (total: 23,670 nt) Show pHMM detection rules used
Region on contig edge.
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
LQYJ01000113.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 5,415 nt. (total: 5,415 nt) Show pHMM detection rules used
Region on contig edge.
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

LQYJ01000039.1 - Region 1 - LAP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 67,480 - 83,346 nt. (total: 15,867 nt) Show pHMM detection rules used
Region on contig edge.
LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
LQYJ01000041.1 - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 6,484 nt. (total: 6,484 nt) Show pHMM detection rules used
Region on contig edge.
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

LQYJ01000049.1 - Region 1 - epipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 20,599 nt. (total: 20,599 nt) Show pHMM detection rules used
Region on contig edge.
epipeptide: (TIGR04078 and yydH)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

LQYJ01000075.1 - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 5,438 nt. (total: 5,438 nt) Show pHMM detection rules used
Region on contig edge.
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.