GCA_001587275.1 - 10 region(s)

Identified primary metabolite regions

LQYJ01000011.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	fatty_acids-unassigned	Putative	24,610	49,065	Acetate to butyrate C. sporogenes	BUT	33%

LQYJ01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 94.1	Putrescine2spermidine	Aliphatic_amine	12,504	32,685	Arginine2putrescine R. gnavus	PUTR	40%

LQYJ01000035.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 108.1	fatty_acids-unassigned	Putative	13,197	36,729	Acetate to butyrate C. sporogenes	BUT	33%

LQYJ01000043.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 117.1	histidine2glutamate_hutHGIU_operon	Other	1	16,965	Histidine to glutamate K. pneumoniae	GLU	60%

LQYJ01000006.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 124.1	TPP_AA_metabolism	Putative	1	35,528	Acetyl-CoA pathway C. beijerinckii	Acetate	13%
Region 124.2	Fumarate2succinate	SCFA	254,348	276,939	Acetate to butyrate C. sporogenes	BUT	33%
Region 124.3	Nitrate_reductase	E-MGC	371,161	397,575	Nitrate reductase E. coli	NIR	60%

LQYJ01000052.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 128.1	Oxidative_glycerol	Other	2,239	35,264

LQYJ01000066.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 143.1	TPP_AA_metabolism	Putative	2,467	28,955	Aromatic amino acid reductive branch C. sporogenes	AAA	16%

LQYJ01000067.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 144.1	Pyruvate2acetate-formate	SCFA	2,291	25,382	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: LQYJ01000001.1; LQYJ01000010.1; LQYJ01000079.1; LQYJ01000080.1; LQYJ01000081.1; LQYJ01000082.1; LQYJ01000083.1; LQYJ01000084.1; LQYJ01000085.1; LQYJ01000086.1; LQYJ01000087.1; LQYJ01000088.1; LQYJ01000090.1; LQYJ01000091.1; LQYJ01000092.1; LQYJ01000093.1; LQYJ01000012.1; LQYJ01000094.1; LQYJ01000095.1; LQYJ01000096.1; LQYJ01000097.1; LQYJ01000098.1; LQYJ01000099.1; LQYJ01000100.1; LQYJ01000101.1; LQYJ01000102.1; LQYJ01000103.1; LQYJ01000104.1; LQYJ01000105.1; LQYJ01000106.1; LQYJ01000107.1; LQYJ01000108.1; LQYJ01000013.1; LQYJ01000109.1; LQYJ01000110.1; LQYJ01000111.1; LQYJ01000014.1; LQYJ01000112.1; LQYJ01000113.1; LQYJ01000114.1; LQYJ01000115.1; LQYJ01000116.1; LQYJ01000117.1; LQYJ01000015.1; LQYJ01000118.1; LQYJ01000119.1; LQYJ01000120.1; LQYJ01000121.1; LQYJ01000122.1; LQYJ01000123.1; LQYJ01000124.1; LQYJ01000125.1; LQYJ01000126.1; LQYJ01000127.1; LQYJ01000128.1; LQYJ01000129.1; LQYJ01000130.1; LQYJ01000131.1; LQYJ01000133.1; LQYJ01000016.1; LQYJ01000134.1; LQYJ01000136.1; LQYJ01000137.1; LQYJ01000002.1; LQYJ01000017.1; LQYJ01000138.1; LQYJ01000140.1; LQYJ01000141.1; LQYJ01000018.1; LQYJ01000142.1; LQYJ01000143.1; LQYJ01000144.1; LQYJ01000019.1; LQYJ01000146.1; LQYJ01000020.1; LQYJ01000148.1; LQYJ01000149.1; LQYJ01000150.1; LQYJ01000151.1; LQYJ01000152.1; LQYJ01000153.1; LQYJ01000156.1; LQYJ01000158.1; LQYJ01000160.1; LQYJ01000021.1; LQYJ01000161.1; LQYJ01000003.1; LQYJ01000022.1; LQYJ01000162.1; LQYJ01000023.1; LQYJ01000024.1; LQYJ01000167.1; LQYJ01000026.1; LQYJ01000027.1; LQYJ01000028.1; LQYJ01000171.1; LQYJ01000172.1; LQYJ01000029.1; LQYJ01000030.1; LQYJ01000031.1; LQYJ01000004.1; LQYJ01000032.1; LQYJ01000173.1; LQYJ01000033.1; LQYJ01000034.1; LQYJ01000036.1; LQYJ01000037.1; LQYJ01000038.1; LQYJ01000039.1; LQYJ01000040.1; LQYJ01000041.1; LQYJ01000005.1; LQYJ01000042.1; LQYJ01000044.1; LQYJ01000045.1; LQYJ01000046.1; LQYJ01000047.1; LQYJ01000048.1; LQYJ01000049.1; LQYJ01000050.1; LQYJ01000051.1; LQYJ01000183.1; LQYJ01000053.1; LQYJ01000054.1; LQYJ01000055.1; LQYJ01000056.1; LQYJ01000057.1; LQYJ01000058.1; LQYJ01000059.1; LQYJ01000007.1; LQYJ01000060.1; LQYJ01000061.1; LQYJ01000062.1; LQYJ01000063.1; LQYJ01000064.1; LQYJ01000065.1; LQYJ01000008.1; LQYJ01000068.1; LQYJ01000069.1; LQYJ01000070.1; LQYJ01000009.1; LQYJ01000072.1; LQYJ01000073.1; LQYJ01000074.1; LQYJ01000075.1; LQYJ01000076.1; LQYJ01000077.1; LQYJ01000078.1

Compact view

LQYJ01000011.1 - Region 1 - fatty_acids-unassigned

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Location: 24,610 - 49,065 nt. (total: 24,456 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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LQYJ01000025.1 - Region 1 - Putrescine2spermidine

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Location: 12,504 - 32,685 nt. (total: 20,182 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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LQYJ01000035.1 - Region 1 - fatty_acids-unassigned

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Location: 13,197 - 36,729 nt. (total: 23,533 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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LQYJ01000043.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 16,965 nt. (total: 16,965 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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LQYJ01000006.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 35,528 nt. (total: 35,528 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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LQYJ01000006.1 - Region 2 - Fumarate2succinate

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Location: 254,348 - 276,939 nt. (total: 22,592 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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LQYJ01000006.1 - Region 3 - Nitrate_reductase

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Location: 371,161 - 397,575 nt. (total: 26,415 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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LQYJ01000052.1 - Region 1 - Oxidative_glycerol

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Location: 2,239 - 35,264 nt. (total: 33,026 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

Legend:

core biosynthetic genes

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resistance genes

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No matches found.

LQYJ01000066.1 - Region 1 - TPP_AA_metabolism

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Location: 2,467 - 28,955 nt. (total: 26,489 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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LQYJ01000067.1 - Region 1 - Pyruvate2acetate-formate

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Location: 2,291 - 25,382 nt. (total: 23,092 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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