GCA_001633265.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

LUXM01000018.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	cyclic-lactone-autoinducer	220,966	241,672

LUXM01000028.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RiPP-like	3,077	14,336

LUXM01000033.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	NRPS,NRPS-like	161,448	220,043

LUXM01000040.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	T3PKS	625,685	666,854

LUXM01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	terpene	27,675	48,556

Region	Type	From	To	Similarity
Region 9.1	cyclic-lactone-autoinducer	220,966	241,672
Region 19.1	RiPP-like	3,077	14,336
Region 24.1	NRPS,NRPS-like	161,448	220,043
Region 31.1	T3PKS	625,685	666,854
Region 33.1	terpene	27,675	48,556

No secondary metabolite regions were found in these records:: LUXM01000001.1; LUXM01000010.1; LUXM01000011.1; LUXM01000012.1; LUXM01000013.1; LUXM01000015.1; LUXM01000016.1; LUXM01000017.1; LUXM01000019.1; LUXM01000002.1; LUXM01000020.1; LUXM01000021.1; LUXM01000023.1; LUXM01000024.1; LUXM01000025.1; LUXM01000026.1; LUXM01000027.1; LUXM01000029.1; LUXM01000003.1; LUXM01000030.1; LUXM01000031.1; LUXM01000034.1; LUXM01000035.1; LUXM01000036.1; LUXM01000037.1; LUXM01000038.1; LUXM01000039.1; LUXM01000041.1; LUXM01000006.1; LUXM01000007.1; LUXM01000008.1; LUXM01000009.1

Compact view

LUXM01000018.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 220,966 - 241,672 nt. (total: 20,707 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LUXM01000028.1 - Region 1 - RiPP-like

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Location: 3,077 - 14,336 nt. (total: 11,260 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LUXM01000033.1 - Region 1 - NRPS,NRPS-like

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Location: 161,448 - 220,043 nt. (total: 58,596 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 161447 - 220043:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 161447 - 216229:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 177625 - 220043:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg24_176

Search NORINE for peptide: strict or relaxed

AMP-binding (8..362): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVtqAAvagK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

ctg24_177

Search NORINE for peptide: strict or relaxed

AMP-binding (637..1009): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgyGCVlK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

AMP-binding (1604..1970): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

ctg24_178

Search NORINE for peptide: strict or relaxed

AMP-binding (45..431): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1451..1829): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg24_181

Search NORINE for peptide: strict or relaxed

AMP-binding (13..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

LUXM01000040.1 - Region 1 - T3PKS

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Location: 625,685 - 666,854 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LUXM01000005.1 - Region 1 - terpene

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Location: 27,675 - 48,556 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.