GCA_001686005.1 - 3 region(s)

Identified primary metabolite regions

BCYA01000041.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate	SCFA	49,169	72,545	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

BCYA01000046.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Fumarate2succinate	SCFA	29,458	52,302	Fumarate2succinate suc dh E. coli	SUC	100%

BCYA01000051.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Others_HGD_unassigned	Putative	1	22,618

No primary metabolite regions were found in these records:: BCYA01000002.1; BCYA01000004.1; BCYA01000006.1; BCYA01000009.1; BCYA01000017.1; BCYA01000019.1; BCYA01000020.1; BCYA01000021.1; BCYA01000022.1; BCYA01000023.1; BCYA01000025.1; BCYA01000026.1; BCYA01000027.1; BCYA01000030.1; BCYA01000031.1; BCYA01000032.1; BCYA01000033.1; BCYA01000035.1; BCYA01000036.1; BCYA01000039.1; BCYA01000040.1; BCYA01000043.1; BCYA01000044.1; BCYA01000047.1; BCYA01000049.1; BCYA01000054.1; BCYA01000057.1; BCYA01000058.1; BCYA01000059.1; BCYA01000060.1; BCYA01000064.1; BCYA01000065.1; BCYA01000066.1; BCYA01000067.1; BCYA01000068.1; BCYA01000071.1; BCYA01000072.1

Compact view

BCYA01000041.1 - Region 1 - Pyruvate2acetate-formate

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Location: 49,169 - 72,545 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

BCYA01000046.1 - Region 1 - Fumarate2succinate

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Location: 29,458 - 52,302 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

BCYA01000051.1 - Region 1 - Others_HGD_unassigned

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Location: 1 - 22,618 nt. (total: 22,618 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.