GCA_001686025.1 - 3 region(s)

Identified primary metabolite regions

BCYB01000037.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Fumarate2succinate	SCFA	166,952	189,796	Fumarate2succinate suc dh E. coli	SUC	100%

BCYB01000069.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Others_HGD_unassigned	Putative	38,420	63,178

BCYB01000076.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	Pyruvate2acetate-formate	SCFA	1	20,519	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: BCYB01000001.1; BCYB01000004.1; BCYB01000005.1; BCYB01000007.1; BCYB01000008.1; BCYB01000009.1; BCYB01000010.1; BCYB01000012.1; BCYB01000018.1; BCYB01000019.1; BCYB01000020.1; BCYB01000022.1; BCYB01000024.1; BCYB01000027.1; BCYB01000028.1; BCYB01000030.1; BCYB01000035.1; BCYB01000036.1; BCYB01000039.1; BCYB01000047.1; BCYB01000048.1; BCYB01000049.1; BCYB01000050.1; BCYB01000058.1; BCYB01000071.1; BCYB01000072.1; BCYB01000073.1; BCYB01000078.1; BCYB01000079.1; BCYB01000080.1; BCYB01000082.1; BCYB01000083.1; BCYB01000084.1; BCYB01000085.1; BCYB01000086.1

Compact view

BCYB01000037.1 - Region 1 - Fumarate2succinate

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Location: 166,952 - 189,796 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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BCYB01000069.1 - Region 1 - Others_HGD_unassigned

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Location: 38,420 - 63,178 nt. (total: 24,759 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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No matches found.

BCYB01000076.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 20,519 nt. (total: 20,519 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters