GCA_001686045.1 - 3 region(s)

Identified primary metabolite regions

BCYC01000013.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	90,900	114,276	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

BCYC01000030.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Fumarate2succinate	SCFA	458,584	481,428	Fumarate2succinate suc dh E. coli	SUC	100%

BCYC01000045.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Others_HGD_unassigned	Putative	140,055	164,834

No primary metabolite regions were found in these records:: BCYC01000005.1; BCYC01000008.1; BCYC01000014.1; BCYC01000019.1; BCYC01000020.1; BCYC01000025.1; BCYC01000028.1; BCYC01000029.1; BCYC01000031.1; BCYC01000032.1; BCYC01000033.1; BCYC01000035.1; BCYC01000036.1; BCYC01000037.1; BCYC01000038.1; BCYC01000039.1; BCYC01000040.1; BCYC01000041.1; BCYC01000042.1; BCYC01000043.1; BCYC01000044.1; BCYC01000047.1; BCYC01000048.1; BCYC01000049.1; BCYC01000050.1; BCYC01000051.1; BCYC01000052.1; BCYC01000053.1; BCYC01000054.1; BCYC01000055.1; BCYC01000056.1; BCYC01000057.1; BCYC01000058.1; BCYC01000059.1

Compact view

BCYC01000013.1 - Region 1 - Pyruvate2acetate-formate

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Location: 90,900 - 114,276 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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BCYC01000030.1 - Region 1 - Fumarate2succinate

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Location: 458,584 - 481,428 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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BCYC01000045.1 - Region 1 - Others_HGD_unassigned

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Location: 140,055 - 164,834 nt. (total: 24,780 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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