GCA_001686065.1 - 3 region(s)

Identified primary metabolite regions

BCYD01000042.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate	SCFA	1	12,878	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

BCYD01000057.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Others_HGD_unassigned	Putative	1	14,909

BCYD01000065.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Fumarate2succinate	SCFA	240,951	263,795	Fumarate2succinate suc dh E. coli	SUC	100%

No primary metabolite regions were found in these records:: BCYD01000001.1; BCYD01000004.1; BCYD01000005.1; BCYD01000008.1; BCYD01000009.1; BCYD01000013.1; BCYD01000014.1; BCYD01000017.1; BCYD01000019.1; BCYD01000021.1; BCYD01000025.1; BCYD01000028.1; BCYD01000029.1; BCYD01000030.1; BCYD01000031.1; BCYD01000032.1; BCYD01000033.1; BCYD01000034.1; BCYD01000035.1; BCYD01000036.1; BCYD01000037.1; BCYD01000043.1; BCYD01000044.1; BCYD01000045.1; BCYD01000046.1; BCYD01000047.1; BCYD01000048.1; BCYD01000049.1; BCYD01000050.1; BCYD01000051.1; BCYD01000052.1; BCYD01000053.1; BCYD01000054.1; BCYD01000055.1; BCYD01000056.1; BCYD01000058.1; BCYD01000059.1; BCYD01000060.1; BCYD01000061.1; BCYD01000062.1; BCYD01000063.1; BCYD01000064.1; BCYD01000066.1

Compact view

BCYD01000042.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 12,878 nt. (total: 12,878 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

BCYD01000057.1 - Region 1 - Others_HGD_unassigned

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Location: 1 - 14,909 nt. (total: 14,909 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

BCYD01000065.1 - Region 1 - Fumarate2succinate

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Location: 240,951 - 263,795 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters