GCA_001876485.1 - 8 region(s)

Identified primary metabolite regions

LWJX01000068.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	fatty_acids-unassigned	Putative	1	12,242	Acetate to butyrate C. sporogenes	BUT	33%

LWJX01000079.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	fatty_acids-unassigned	Putative	9,889	35,243	Acetate to butyrate C. sporogenes	BUT	33%

LWJX01000101.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	fatty_acids-unassigned	Putative	66,277	119,958

LWJX01000217.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	Putrescine2spermidine	Aliphatic_amine	46,639	67,469	Arginine2putrescine R. gnavus	PUTR	40%

LWJX01000222.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 95.1	hydroxybenzoate2phenol	Aromatic	5,147	27,185	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

LWJX01000225.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 98.1	Nitrate_reductase	E-MGC	1	22,388	Nitrate reductase E. coli	NIR	60%

LWJX01000262.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 135.1	TPP_fatty_acids,TPP_AA_metabolism,Fumarate2succinate	SCFA	1	25,328

LWJX01000270.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 142.1	histidine2glutamate_hutHGIU_operon	Other	1	16,429	Histidine to glutamate K. pneumoniae	GLU	60%

No primary metabolite regions were found in these records:: LWJX01000001.1; LWJX01000002.1; LWJX01000003.1; LWJX01000004.1; LWJX01000005.1; LWJX01000006.1; LWJX01000007.1; LWJX01000008.1; LWJX01000009.1; LWJX01000011.1; LWJX01000012.1; LWJX01000013.1; LWJX01000014.1; LWJX01000015.1; LWJX01000016.1; LWJX01000017.1; LWJX01000019.1; LWJX01000021.1; LWJX01000022.1; LWJX01000023.1; LWJX01000024.1; LWJX01000026.1; LWJX01000027.1; LWJX01000028.1; LWJX01000033.1; LWJX01000035.1; LWJX01000036.1; LWJX01000037.1; LWJX01000038.1; LWJX01000039.1; LWJX01000040.1; LWJX01000041.1; LWJX01000042.1; LWJX01000044.1; LWJX01000045.1; LWJX01000046.1; LWJX01000047.1; LWJX01000050.1; LWJX01000051.1; LWJX01000052.1; LWJX01000053.1; LWJX01000055.1; LWJX01000056.1; LWJX01000057.1; LWJX01000060.1; LWJX01000061.1; LWJX01000062.1; LWJX01000065.1; LWJX01000066.1; LWJX01000073.1; LWJX01000074.1; LWJX01000077.1; LWJX01000080.1; LWJX01000083.1; LWJX01000090.1; LWJX01000095.1; LWJX01000096.1; LWJX01000100.1; LWJX01000104.1; LWJX01000108.1; LWJX01000110.1; LWJX01000111.1; LWJX01000112.1; LWJX01000113.1; LWJX01000118.1; LWJX01000119.1; LWJX01000120.1; LWJX01000121.1; LWJX01000123.1; LWJX01000124.1; LWJX01000134.1; LWJX01000135.1; LWJX01000136.1; LWJX01000141.1; LWJX01000146.1; LWJX01000154.1; LWJX01000157.1; LWJX01000160.1; LWJX01000168.1; LWJX01000179.1; LWJX01000190.1; LWJX01000201.1; LWJX01000203.1; LWJX01000212.1; LWJX01000214.1; LWJX01000215.1; LWJX01000216.1; LWJX01000218.1; LWJX01000219.1; LWJX01000221.1; LWJX01000223.1; LWJX01000224.1; LWJX01000226.1; LWJX01000227.1; LWJX01000228.1; LWJX01000229.1; LWJX01000230.1; LWJX01000231.1; LWJX01000232.1; LWJX01000233.1; LWJX01000234.1; LWJX01000235.1; LWJX01000236.1; LWJX01000237.1; LWJX01000238.1; LWJX01000239.1; LWJX01000240.1; LWJX01000241.1; LWJX01000242.1; LWJX01000243.1; LWJX01000244.1; LWJX01000245.1; LWJX01000246.1; LWJX01000247.1; LWJX01000248.1; LWJX01000249.1; LWJX01000250.1; LWJX01000251.1; LWJX01000252.1; LWJX01000253.1; LWJX01000254.1; LWJX01000255.1; LWJX01000256.1; LWJX01000257.1; LWJX01000258.1; LWJX01000259.1; LWJX01000260.1; LWJX01000261.1; LWJX01000263.1; LWJX01000264.1; LWJX01000266.1; LWJX01000267.1; LWJX01000268.1; LWJX01000269.1; LWJX01000271.1; LWJX01000272.1; LWJX01000273.1; LWJX01000275.1; LWJX01000276.1; LWJX01000277.1; LWJX01000279.1; LWJX01000281.1; LWJX01000282.1; LWJX01000283.1; LWJX01000284.1; LWJX01000285.1; LWJX01000286.1; LWJX01000287.1; LWJX01000288.1; LWJX01000289.1; LWJX01000290.1; LWJX01000291.1

Compact view

LWJX01000068.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 1 - 12,242 nt. (total: 12,242 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LWJX01000079.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 9,889 - 35,243 nt. (total: 25,355 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LWJX01000101.1 - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 66,277 - 119,958 nt. (total: 53,682 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LWJX01000217.1 - Region 1 - Putrescine2spermidine

Download region GenBank file

Location: 46,639 - 67,469 nt. (total: 20,831 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LWJX01000222.1 - Region 1 - hydroxybenzoate2phenol

Download region GenBank file

Location: 5,147 - 27,185 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LWJX01000225.1 - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 1 - 22,388 nt. (total: 22,388 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

LWJX01000262.1 - Region 1 - Fumarate2succinate,TPP_AA_metabolism,TPP_fatty_acids

Download region GenBank file

Location: 1 - 25,328 nt. (total: 25,328 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LWJX01000270.1 - Region 1 - histidine2glutamate_hutHGIU_operon

Download region GenBank file

Location: 1 - 16,429 nt. (total: 16,429 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters