GCA_001876645.1 - 7 region(s)

Identified primary metabolite regions

LWJY01000002.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	215,066	231,378

LWJY01000108.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	histidine2glutamate_hutHGIU_operon	Other	63,607	89,018	Histidine to glutamate K. pneumoniae	GLU	60%

LWJY01000110.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	fatty_acids-unassigned	Putative	103,677	126,912	Acetate to butyrate C. sporogenes	BUT	50%

LWJY01000118.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	150,100	195,137	Nitrate reductase E. coli	NIR	60%

LWJY01000121.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	hydroxybenzoate2phenol	Aromatic	69,924	91,962	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

LWJY01000140.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	fatty_acids-unassigned	Putative	273,140	298,494	Acetate to butyrate C. sporogenes	BUT	33%

LWJY01000151.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	fatty_acids-unassigned	Putative	1	46,362

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	TPP_AA_metabolism	Putative	215,066	231,378
Region 22.1	histidine2glutamate_hutHGIU_operon	Other	63,607	89,018	Histidine to glutamate K. pneumoniae	GLU	60%
Region 24.1	fatty_acids-unassigned	Putative	103,677	126,912	Acetate to butyrate C. sporogenes	BUT	50%
Region 32.1	Nitrate_reductase,Putrescine2spermidine	Aliphatic_amine	150,100	195,137	Nitrate reductase E. coli	NIR	60%
Region 35.1	hydroxybenzoate2phenol	Aromatic	69,924	91,962	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 51.1	fatty_acids-unassigned	Putative	273,140	298,494	Acetate to butyrate C. sporogenes	BUT	33%
Region 59.1	fatty_acids-unassigned	Putative	1	46,362

No primary metabolite regions were found in these records:: LWJY01000001.1; LWJY01000009.1; LWJY01000013.1; LWJY01000014.1; LWJY01000020.1; LWJY01000024.1; LWJY01000026.1; LWJY01000031.1; LWJY01000035.1; LWJY01000037.1; LWJY01000038.1; LWJY01000042.1; LWJY01000046.1; LWJY01000057.1; LWJY01000068.1; LWJY01000079.1; LWJY01000084.1; LWJY01000090.1; LWJY01000101.1; LWJY01000107.1; LWJY01000109.1; LWJY01000111.1; LWJY01000112.1; LWJY01000113.1; LWJY01000114.1; LWJY01000115.1; LWJY01000116.1; LWJY01000117.1; LWJY01000119.1; LWJY01000120.1; LWJY01000122.1; LWJY01000123.1; LWJY01000124.1; LWJY01000125.1; LWJY01000126.1; LWJY01000127.1; LWJY01000128.1; LWJY01000129.1; LWJY01000130.1; LWJY01000131.1; LWJY01000133.1; LWJY01000135.1; LWJY01000136.1; LWJY01000137.1; LWJY01000139.1; LWJY01000141.1; LWJY01000142.1; LWJY01000143.1; LWJY01000146.1; LWJY01000147.1; LWJY01000148.1; LWJY01000149.1; LWJY01000153.1; LWJY01000154.1; LWJY01000155.1; LWJY01000156.1; LWJY01000159.1; LWJY01000162.1; LWJY01000164.1; LWJY01000165.1; LWJY01000166.1; LWJY01000167.1; LWJY01000168.1; LWJY01000169.1; LWJY01000170.1; LWJY01000172.1; LWJY01000173.1; LWJY01000174.1; LWJY01000175.1; LWJY01000176.1; LWJY01000178.1; LWJY01000181.1; LWJY01000184.1; LWJY01000185.1; LWJY01000187.1; LWJY01000188.1; LWJY01000189.1; LWJY01000190.1; LWJY01000192.1; LWJY01000193.1; LWJY01000194.1

Compact view

LWJY01000002.1 - Region 1 - TPP_AA_metabolism

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Location: 215,066 - 231,378 nt. (total: 16,313 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

LWJY01000108.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 63,607 - 89,018 nt. (total: 25,412 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LWJY01000110.1 - Region 1 - fatty_acids-unassigned

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Location: 103,677 - 126,912 nt. (total: 23,236 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LWJY01000118.1 - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 150,100 - 195,137 nt. (total: 45,038 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LWJY01000121.1 - Region 1 - hydroxybenzoate2phenol

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Location: 69,924 - 91,962 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LWJY01000140.1 - Region 1 - fatty_acids-unassigned

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Location: 273,140 - 298,494 nt. (total: 25,355 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

LWJY01000151.1 - Region 1 - fatty_acids-unassigned

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Location: 1 - 46,362 nt. (total: 46,362 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.