GCA_001888265.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

LEBT01000005.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS,NRPS-like	10,926	70,609

LEBT01000031.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	cyclic-lactone-autoinducer	1	18,421

LEBT01000039.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	cyclic-lactone-autoinducer	157,673	178,378

LEBT01000019.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	T3PKS	149,401	178,293

LEBT01000034.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	terpene	1	11,795

LEBT01000003.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	RiPP-like	114,401	126,551

Region	Type	From	To	Similarity
Region 6.1	NRPS,NRPS-like	10,926	70,609
Region 11.1	cyclic-lactone-autoinducer	1	18,421
Region 23.1	cyclic-lactone-autoinducer	157,673	178,378
Region 34.1	T3PKS	149,401	178,293
Region 36.1	terpene	1	11,795
Region 56.1	RiPP-like	114,401	126,551

Compact view

LEBT01000005.1 - Region 1 - NRPS,NRPS-like

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Location: 10,926 - 70,609 nt. (total: 59,684 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 10925 - 70609:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 10925 - 66795:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 28191 - 70609:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_31

Search NORINE for peptide: strict or relaxed

AMP-binding (8..381): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVtqAAvagK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

AMP-binding (1000..1372): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgyGCVlK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

AMP-binding (1967..2333): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

AMP-binding (2921..3307): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (4327..4705): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg6_34

Search NORINE for peptide: strict or relaxed

AMP-binding (11..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

LEBT01000031.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 18,421 nt. (total: 18,421 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBT01000039.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 157,673 - 178,378 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBT01000019.1 - Region 1 - T3PKS

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Location: 149,401 - 178,293 nt. (total: 28,893 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBT01000034.1 - Region 1 - terpene

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Location: 1 - 11,795 nt. (total: 11,795 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBT01000003.1 - Region 1 - RiPP-like

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Location: 114,401 - 126,551 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.