GCA_001888405.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

LEBM01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	cyclic-lactone-autoinducer	7,145	27,850

LEBM01000029.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS,NRPS-like	10,799	70,482

LEBM01000026.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	T3PKS	1	40,327

LEBM01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	terpene	94,051	109,588

LEBM01000009.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	27,888	40,038

LEBM01000030.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	cyclic-lactone-autoinducer	1	18,064

Region	Type	From	To	Similarity
Region 3.1	cyclic-lactone-autoinducer	7,145	27,850
Region 4.1	NRPS,NRPS-like	10,799	70,482
Region 5.1	T3PKS	1	40,327
Region 6.1	terpene	94,051	109,588
Region 22.1	RiPP-like	27,888	40,038
Region 26.1	cyclic-lactone-autoinducer	1	18,064

Compact view

LEBM01000001.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 7,145 - 27,850 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LEBM01000029.1 - Region 1 - NRPS,NRPS-like

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Location: 10,799 - 70,482 nt. (total: 59,684 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 10798 - 70482:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 10798 - 66668:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 28064 - 70482:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_30

Search NORINE for peptide: strict or relaxed

AMP-binding (8..381): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVtqAAvagK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

AMP-binding (1000..1372): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgyGCVlK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 50% (weak)

AMP-binding (1967..2333): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

AMP-binding (2921..3307): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (4327..4705): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGiVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg4_33

Search NORINE for peptide: strict or relaxed

AMP-binding (11..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

LEBM01000026.1 - Region 1 - T3PKS

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Location: 1 - 40,327 nt. (total: 40,327 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LEBM01000012.1 - Region 1 - terpene

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Location: 94,051 - 109,588 nt. (total: 15,538 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LEBM01000009.1 - Region 1 - RiPP-like

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Location: 27,888 - 40,038 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBM01000030.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 18,064 nt. (total: 18,064 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.