GCA_001888415.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

LEBJ01000004.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	7,145	27,850

LEBJ01000001.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RiPP-like	114,306	126,456

LEBJ01000028.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	terpene	94,129	109,666

LEBJ01000017.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS-like,NRPS	31,868	90,929

LEBJ01000025.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	T3PKS	7,425	48,594

LEBJ01000022.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	cyclic-lactone-autoinducer	28,843	46,605

Region	Type	From	To
Region 1.1	cyclic-lactone-autoinducer	7,145	27,850
Region 3.1	RiPP-like	114,306	126,456
Region 5.1	terpene	94,129	109,666
Region 8.1	NRPS-like,NRPS	31,868	90,929
Region 20.1	T3PKS	7,425	48,594
Region 27.1	cyclic-lactone-autoinducer	28,843	46,605

Compact view

LEBJ01000004.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 7,145 - 27,850 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

LEBJ01000001.1 - Region 1 - RiPP-like

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Location: 114,306 - 126,456 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBJ01000028.1 - Region 1 - terpene

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Location: 94,129 - 109,666 nt. (total: 15,538 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBJ01000017.1 - Region 1 - NRPS,NRPS-like

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Location: 31,868 - 90,929 nt. (total: 59,062 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 31867 - 90929:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 31867 - 72798:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 35059 - 90929:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - X - D-ser - gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

LEBJ01000025.1 - Region 1 - T3PKS

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Location: 7,425 - 48,594 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

LEBJ01000022.1 - Region 1 - cyclic-lactone-autoinducer

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Location: 28,843 - 46,605 nt. (total: 17,763 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.